BAC Information

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BAC

Clone NameB6Ng01-134I21
ChromosomeX (Build37)
Map Location 89,694,908 - 89,811,251
singlet/doubletdoublet
Overlap geneMageb18, EG546347
Upstream geneEG667988, EG667993, EG385489, 1700084M14Rik, EG236891, LOC629542, Mageb5, LOC673766, LOC633484, LOC674396, EG278087, Mageb1, EG236892, EG236893, EG436259, EG668061
Downstream geneLOC629568, LOC100042663, Rp23-438h3.2, Arx, Pola1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134I21.bB6Ng01-134I21.g
ACCDH934822DH934823
length1,0891,084
definitionDH934822|Mus musculus domesticus DNA, BAC clone: B6Ng01-134I21, 5' end.DH934823|Mus musculus domesticus DNA, BAC clone: B6Ng01-134I21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,694,908 - 89,696,003)(89,810,691 - 89,811,251)
sequence
gaattcaactgtcttggggtttgaggaaggcttccatcctaaagtatctg
gttgtacatgtcatcttcttttgtctatccaacactctgaggctggaaag
catgaactgtatcttaagagtttccactatggtatgtattataaattttt
tttaaggaagggggatattactaataaatactacaggatagctgtgggta
aatagttcagggtaagtatatgaaactgaaatgctcctctttgaagggtt
taaacaaaagtaaatgaataaaattcattgtatacatgtgaaatggaaac
ttgagggttctttggaaagtcggctggatggtgttttgctggagcaaaca
tgtgaaggaacgtttcattaaagtggacacaggtgtaaaaggctaaggca
gagtcatgaaggaacatttccttgaagcagacacaggagagaagacgttg
tgctaaagcaagcatgtgaaaggacatgtgatgacatgtcctttcacatt
aacacacatgtattggtctgccttacactgagtggttgagctgcatttgt
tgggattccatagagagaaatgcaacaaaaaacttctggtggtgtgctgc
agtttcttgttgattctgcaatctaattggatttgcattctgaggcaaga
catatggaagacacatgatgtttggagagtataaataggactccacagtg
tgacagagagaacttggcttgctagtacagcttgctgagcaatgcttgtg
agtcttgcttctttgctgatctttggttccctacgagaggcacagccaga
acttctctggtgtctttctgaacaggtccactcccatcccaccgcacctg
tatcctttcttttccatttcttatgaggggtggtgggctacagagaggta
aaacatttaagaaccatcattaaaaatatgtttgaaaacttaaagttgca
tgcacacccatgaaatggcatacaaaacccattattgtgtttattaatgc
cacctaattaaaacctaataaatgtcaataataagaaatggtggtcacaa
tcctaactttaacacttaggagggtgaaggcgaagtctg
gaattcagtttgcaagtattttattgagaatttttgcatctatgttgaca
aggtatattagtctgtaatgttatcctcctcttcttcctccttttcttcc
ttcttatctttcttcttcttttcctcttccttcttcttttggtttggtct
ttgcatggtttttgattccagggtaagaatggctttataaaaagagttag
gaaatgttccttccatttctattttgcagaataatttaaggagtattggc
tttagttattctttgaattctgcactgagaaatggatgtggaaacaaagt
tccaaccctaagtaagaagctgtttgcactttatacctgctgagaaaaaa
atcttgcttataaggactacttcagactactcttttacctaatatagatc
ctgactatacctatgtcattcaacatgtttccagacaattagcattaaca
tcacatgggaaagtattggaaatgaaaaaaaaatccttaggttctatctc
agacctactgaattagaaactgcattaaaaaatcatggtatctgtgaagc
caatatggattgagaagtacaggtgtatggataatatgatttcattaaca
tgattttttttctggtgattaaaaattcaagcagtgagtaccttgaggag
gtaatggggttgaggattgatcataaagcagcttgaaggaacttctagac
tggtagaaattctccatgttgtgatgagatagtatgtttcataggtacac
acatttaatgtgtggtatcaatgatttgtatttttaatggtatggaaaat
ataatttaactgacaaagtaaaagaagattccatgcttgggttctgctat
ataaattctggtttacctggggaaaggatgcacgctagtcctgtaaggat
tttaaaatattcctaggtgattttaatggcagctcagtttgacctaatgt
ctgatgaatgtaaaaggcaaggagaagacgggggcggtagaagacagatt
tatttggaacctgaggcatcagaaagcattcatgtcaaagaaacaagaaa
gatttaagaaaaagaattttttttttttaacaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_89694908_89696003
seq2: B6Ng01-134I21.b_47_1135

seq1  GAATTCAACTGTCTTGGGGTTTGAGGAAGGCTTCCATCCTAAAGTATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTGTCTTGGGGTTTGAGGAAGGCTTCCATCCTAAAGTATCTG  50

seq1  GTTGTACATGTCATCTTCTTTTGTCTATCCAACACTCTGAGGCTGGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTACATGTCATCTTCTTTTGTCTATCCAACACTCTGAGGCTGGAAAG  100

seq1  CATGAACTGTATCTTAAGAGTTTCCACTATGGTATGTATTATAAATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACTGTATCTTAAGAGTTTCCACTATGGTATGTATTATAAATTTTT  150

seq1  TTTAAGGAAGGGGGATATTACTAATAAATACTACAGGATAGCTGTGGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGAAGGGGGATATTACTAATAAATACTACAGGATAGCTGTGGGTA  200

seq1  AATAGTTCAGGGTAAGTATATGAAACTGAAATGCTCCTCTTTGAAGGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTCAGGGTAAGTATATGAAACTGAAATGCTCCTCTTTGAAGGGTT  250

seq1  TAAACAAAAGTAAATGAATAAAATTCATTGTATACATGTGAAATGGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAAAGTAAATGAATAAAATTCATTGTATACATGTGAAATGGAAAC  300

seq1  TTGAGGGTTCTTTGGAAAGTCGGCTGGATGGTGTTTTGCTGGAGCAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGTTCTTTGGAAAGTCGGCTGGATGGTGTTTTGCTGGAGCAAACA  350

seq1  TGTGAAGGAACGTTTCATTAAAGTGGACACAGGTGTAAAAGGCTAAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGGAACGTTTCATTAAAGTGGACACAGGTGTAAAAGGCTAAGGCA  400

seq1  GAGTCATGAAGGAACATTTCCTTGAAGCAGACACAGGAGAGAAGACGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATGAAGGAACATTTCCTTGAAGCAGACACAGGAGAGAAGACGTTG  450

seq1  TGCTAAAGCAAGCATGTGAAAGGACATGTGATGACATGTCCTTTCACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAGCAAGCATGTGAAAGGACATGTGATGACATGTCCTTTCACATT  500

seq1  AACACACATGTATTGGTCTGCCTTACACTGAGTGGTTGAGCTGCATTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACATGTATTGGTCTGCCTTACACTGAGTGGTTGAGCTGCATTTGT  550

seq1  TGGGATTCCATAGAGAGAAATGCAACAAAAAACTTCTGGTGGTGTGCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTCCATAGAGAGAAATGCAACAAAAAACTTCTGGTGGTGTGCTGC  600

seq1  AGTTTCTTGTTGATTCTGCAATCTAATTGGATTTGCATTCTGAGGCAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTTGTTGATTCTGCAATCTAATTGGATTTGCATTCTGAGGCAAGA  650

seq1  CATATGGAAGACACATGATGTTTGGAGAGTATAAATAGGACTCCACAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGAAGACACATGATGTTTGGAGAGTATAAATAGGACTCCACAGTG  700

seq1  TGACAGAGAGAACTTGGCTTGCTAGTACAGCTTGCTGAGCAATGCTTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAGAGAACTTGGCTTGCTAGTACAGCTTGCTGAGCAATGCTTGTG  750

seq1  AGTCTTGCTTCTTTGCTGATCTTTGGTTCCCTACGAGAGGCACAGCCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGCTTCTTTGCTGATCTTTGGTTCCCTACGAGAGGCACAGCCAGA  800

seq1  ACTTCTCTGGTGTCTTTCTGAACAGGTCCACTCCCATCCCACCGCACCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCTGGTGTCTTTCTGAACAGGTCCACTCCCATCCCACCGCACCTG  850

seq1  TATCCTTTCTTTTCCATTTCTTATGAGGGGTGGTGGGCTACAAGAGAGGT  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  TATCCTTTCTTTTCCATTTCTTATGAGGGGTGGTGGGCTAC-AGAGAGG-  898

seq1  TAAAACATTTAAGAACCATCATTAAAAATAATGTTTGAAAAACTTAAAGT  950
      ||||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  TAAAACATTTAAGAACCATCATTAAAAAT-ATGTTTG-AAAACTTAAAGT  946

seq1  TGCATGCACACACATGAAATGGCATACAAAACCCATTATTGTGTATACAT  1000
      ||||||||||| |||||||||||||||||||||||||||||||| ||  |
seq2  TGCATGCACACCCATGAAATGGCATACAAAACCCATTATTGTGTTTA-TT  995

seq1  AATGCACACTAATAAAAACCTAATAAAATGTCAATAATAAGATATGGTGG  1050
      |||||   ||||| |||||||||| ||||||||||||||||| |||||||
seq2  AATGCCACCTAATTAAAACCTAAT-AAATGTCAATAATAAGAAATGGTGG  1044

seq1  T-ACATATCTATACTTTTAACACTTAGGA-GGTGAAGGCAGAAGTCTG  1096
      | ||| |||  ||  |||||||||||||| ||||||||| ||||||||
seq2  TCACA-ATC-CTAACTTTAACACTTAGGAGGGTGAAGGC-GAAGTCTG  1089

seq1: chrX_89810691_89811251
seq2: B6Ng01-134I21.g_591_1150 (reverse)

seq1  ATTGTTTAAAAAAAAAAAATC-TTTTCTTAAA-CTTTCTTGTTTC-TTGA  47
      |||||| ||||||||||| || |||||||||| |||||||||||| ||||
seq2  ATTGTTAAAAAAAAAAAATTCTTTTTCTTAAATCTTTCTTGTTTCTTTGA  50

seq1  CATGAATGCTTTCTGATGGCCTTCTGGTTCCAA--TAATCTGTCCTTCTA  95
      ||||||||||||||||||  | || ||||||||   ||||||| ||||||
seq2  CATGAATGCTTTCTGATG--CCTCAGGTTCCAAATAAATCTGT-CTTCTA  97

seq1  CCGCCCCCCGTCTTCTCCTGCCCTTTTACATTCATCAGAACATTAGGTCA  145
      ||| |||||||||||||||  ||||||||||||||||| |||||||||||
seq2  CCG-CCCCCGTCTTCTCCTTGCCTTTTACATTCATCAG-ACATTAGGTCA  145

seq1  AACTGAGCTGCCCATTAAAATCACCTAGGAATATTTTAAAATCCTTACAG  195
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGCTG-CCATTAAAATCACCTAGGAATATTTTAAAATCCTTACAG  194

seq1  GACTAGCCTGCATCCTTTCCCCAGGTAAACCAGAATTTATATAGCAGAAC  245
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGCGTGCATCCTTTCCCCAGGTAAACCAGAATTTATATAGCAGAAC  244

seq1  CCAAGCATGGAATCTTCTTTTACTTTGTCAGTTAAATTATATTTTCCATA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCATGGAATCTTCTTTTACTTTGTCAGTTAAATTATATTTTCCATA  294

seq1  CCATTAAAAATACAAATCATTGATACCACACATTAAATGTGTGTACCTAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAAAAATACAAATCATTGATACCACACATTAAATGTGTGTACCTAT  344

seq1  GAAACATACTATCTCATCACAACATGGAGAATTTCTACCAGTCTAGAAGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATACTATCTCATCACAACATGGAGAATTTCTACCAGTCTAGAAGT  394

seq1  TCCTTCAAGCTGCTTTATGATCAATCCTCAACCCCATTACCTCCTCAAGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAAGCTGCTTTATGATCAATCCTCAACCCCATTACCTCCTCAAGG  444

seq1  TACTCACTGCTTGAATTTTTAATCACCAGAAAAAAAATCATGTTAATGAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACTGCTTGAATTTTTAATCACCAGAAAAAAAATCATGTTAATGAA  494

seq1  ATCATATTATCCATACACCTGTACTTCTCAATCCATATTGGCTTCACAGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATTATCCATACACCTGTACTTCTCAATCCATATTGGCTTCACAGA  544

seq1  TACCATGATTTTTTAA  561
      ||||||||||||||||
seq2  TACCATGATTTTTTAA  560