BAC Information

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BAC

Clone NameB6Ng01-135J04
ChromosomeX (Build37)5 (Build37)
Map Location 85,083,851 - 85,084,35814,013,382 - 14,014,444
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneIl1rapl1, LOC667876
Downstream geneEG667883, LOC667891, EG245506, LOC667911, LOC100041707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135J04.bB6Ng01-135J04.g
ACCDH935575DH935576
length9491,057
definitionDH935575|Mus musculus domesticus DNA, BAC clone: B6Ng01-135J04, 5' end.DH935576|Mus musculus domesticus DNA, BAC clone: B6Ng01-135J04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(85,083,851 - 85,084,358)(14,013,382 - 14,014,444)
sequence
gaattccacatttttatcaaagtataaaagcagtcacaattcactcattc
attcaaaagttagtggctaactactagataagaaagtacttaagggtttc
aaagtttattatccttctagtgctttaagtcacaaatgtcaatgtcagtc
agagccaggtggagatgaaaaggctcagcctggatcccggatctagtaag
cctttgttgtggcagtggtggagacctcgaactatgggggctttgtgaag
cttaggcctctgtgtggggagtgtgtcgacaagcattgggttcccactga
tcttttcatgcgggtccaatggaaatcacaatttactatgtgaacccaag
cggttttttttttcggaatgtacgctcagtaaaagaaaacaagggggaca
gccagccaccgtccggaccagaggacaggtgcccgcccggctggggaggc
gacctaagccacagcagcagcggtcgccatcttggtcctagacccgccga
acttaggaaattagtctgaacaggtgagagggtgcgccagagaacctgac
agcctctggaacaggcagaagcacagaggggctgaggcagcaccctgtgt
gggccggggacagccggccaccttccggaccggaggacaggtgcccgccc
ggctggggaggcggcctaagccacagcagcagcggtcgccatcttggtcc
gggacccgccgaacttaggaaattagtctgaacaggtgagagggtgcgcc
agagaacctgacagcttctggaacaggcggaagcacagaggcgaagaggc
gctgaggcagcaccctgcgtgggccggggacagccgggccaccttccgga
ccggaggacaggtgcccgcccggctggggaggcggcctaagcacagcagc
agcggtcgccatctggtcccgggactccaaggaactaagaatttagtct
gaattcataccctcccttttactccaaatattggcctaggaatttttttc
tatgttaaaaacatcactgtaaatattgttacctagtttaaatatgataa
attaatgttcaacatcacaaagagtaattatatttaatatttattttttt
cttagtgattgtgtattcctgagtcttttgcttttaataagaagagttat
tttcatatggacaagaaagcagcaggatgccaggccttgaagcaggaatg
tgcttagtaaggcagagaatttccaggaggccataagtgtagcatgagga
gcagaaggcagggagataaagttaaagcaaaagcacaatgcagaagcctg
gatcaagatggaattcttagactagtacaaggattttactctttggattg
gcattgaaagagagatgatctaaatatttcatagacgaaaacaagtctca
agatggaaggaaagttataaaccaaactcgtactttgaagatgctaaggt
gaatttgttgattgagcatctaagcaatgatgactggaagatgctggatg
taaagatgtgaacatgaaagagctgctggtttgtgtttgcagatatagat
tggtatctcatctcttagatatgatgaaaagtcatggtcttgcttgggat
taccagtcattgaaatcaaaggaccagcatatctaggagataaacatgga
tttgctacagggatttagcctgaaccatttgtggaggttggcccataact
ctttgttgggtggttttcttcttgccagggactggatttggaggacacat
ggcagccagaggagaatggaaagtgtggagaagaaaagcatgaaaaagaa
cgcaaagacagatggaaaccagcctggctgtttcttccgacttcagtaat
gccaatgttttgcagaggcttcatcaggccttcaccctgaagctggccca
gggaaccgaaatctgaaaggatggtatcattgcagaaggagtagctatgt
actaacccatcagttacgtgctctgctctctatacttctaagaacttctt
ttcgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_85083851_85084358
seq2: B6Ng01-135J04.b_442_957

seq1  GGGACAGCCAGCCACCGTCTGGACCGGAGGACAGGTGCCCGCCCGGCTGG  50
      ||||||||||||||||||| ||||| ||||||||||||||||||||||||
seq2  GGGACAGCCAGCCACCGTCCGGACCAGAGGACAGGTGCCCGCCCGGCTGG  50

seq1  GGAGGCGGCCTAAGCCACAGCAGCAGCGGTCGACATCTTGGTCCGGGACC  100
      ||||||| |||||||||||||||||||||||| |||||||||||  ||||
seq2  GGAGGCGACCTAAGCCACAGCAGCAGCGGTCGCCATCTTGGTCCTAGACC  100

seq1  CGCCGAACTTAGGAAATTAGTCTGAATAGGTGAGAGGGTGCGCCAGAGAA  150
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CGCCGAACTTAGGAAATTAGTCTGAACAGGTGAGAGGGTGCGCCAGAGAA  150

seq1  CCTGACAGCCTCTGGAACAGGCAGAAGCACAGAGGGGCTGAGGCAGCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACAGCCTCTGGAACAGGCAGAAGCACAGAGGGGCTGAGGCAGCACC  200

seq1  CTGTGTGGGCCGGGGACAGCCGGCCACCTTCCGGACCGGAGGACAGGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGGCCGGGGACAGCCGGCCACCTTCCGGACCGGAGGACAGGTGC  250

seq1  CCACCCAGCTGGGGAGGCGGCCTAAGCCACAGCAGCAGCGGTCGCCATCT  300
      || ||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCGGCTGGGGAGGCGGCCTAAGCCACAGCAGCAGCGGTCGCCATCT  300

seq1  TGGTCTGGGACCCGCCGAACTTAGGAAATTAGTCTGAACAGGTGAGAGGG  350
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCGGGACCCGCCGAACTTAGGAAATTAGTCTGAACAGGTGAGAGGG  350

seq1  TGCGCCAGAGAACCTGACAGCCTCTGGAACAGGCGGAAGCAC--------  392
      ||||||||||||||||||||| ||||||||||||||||||||        
seq2  TGCGCCAGAGAACCTGACAGCTTCTGGAACAGGCGGAAGCACAGAGGCGA  400

seq1  AGAGGCGCTGAGGCAGCACCCTTTGTGGGCCGGGGACAGCC-AGCCACCG  441
      ||||||||||||||||||||||  |||||||||||||||||  |||||| 
seq2  AGAGGCGCTGAGGCAGCACCCTGCGTGGGCCGGGGACAGCCGGGCCACCT  450

seq1  TCCGGACCGGAGGACAGGTGCCCGCCCGGCTGGGGAGGCGGCCTAAGCCA  491
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCCGGACCGGAGGACAGGTGCCCGCCCGGCTGGGGAGGCGGCCTAAG-CA  499

seq1  CAGCAGCAGCGGTCGCC  508
      |||||||||||||||||
seq2  CAGCAGCAGCGGTCGCC  516

seq1: chr5_14013382_14014444
seq2: B6Ng01-135J04.g_65_1121

seq1  GAATTCATACCCTCCCTTTTACTCCAAATATTGGCCTAGGAATTTTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACCCTCCCTTTTACTCCAAATATTGGCCTAGGAATTTTTTTC  50

seq1  TATGTTAAAAACATCACTGTAAATATTGTTACCTAGTTTAAATATGATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTAAAAACATCACTGTAAATATTGTTACCTAGTTTAAATATGATAA  100

seq1  ATTAATGTTCAACATCACAAAGAGTAATTATATTTAATATTTATTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTTCAACATCACAAAGAGTAATTATATTTAATATTTATTTTTTT  150

seq1  CTTAGTGATTGTGTATTCCTGAGTCTTTTGCTTTTAATAAGAAGAGTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGATTGTGTATTCCTGAGTCTTTTGCTTTTAATAAGAAGAGTTAT  200

seq1  TTTCATATGGACAAGAAAGCAGCAGGATGCCAGGCCTTGAAGCAGGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATGGACAAGAAAGCAGCAGGATGCCAGGCCTTGAAGCAGGAATG  250

seq1  TGCTTAGTAAGGCAGAGAATTTCCAGGAGGCCATAAGTGTAGCATGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGTAAGGCAGAGAATTTCCAGGAGGCCATAAGTGTAGCATGAGGA  300

seq1  GCAGAAGGCAGGGAGATAAAGTTAAAGCAAAAGCACAATGCAGAAGCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGGCAGGGAGATAAAGTTAAAGCAAAAGCACAATGCAGAAGCCTG  350

seq1  GATCAAGATGGAATTCTTAGACTAGTACAAGGATTTTACTCTTTGGATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAGATGGAATTCTTAGACTAGTACAAGGATTTTACTCTTTGGATTG  400

seq1  GCATTGAAAGAGAGATGATCTAAATATTTCATAGACGAAAACAAGTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGAAAGAGAGATGATCTAAATATTTCATAGACGAAAACAAGTCTCA  450

seq1  AGATGGAAGGAAAGTTATAAACCAAACTCGTACTTTGAAGATGCTAAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAAGGAAAGTTATAAACCAAACTCGTACTTTGAAGATGCTAAGGT  500

seq1  GAATTTGTTGATTGAGCATCTAAGCAATGATGACTGGAAGATGCTGGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGTTGATTGAGCATCTAAGCAATGATGACTGGAAGATGCTGGATG  550

seq1  TAAAGATGTGAACATGAAAGAGCTGCTGGTTTGTGTTTGCAGATATAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATGTGAACATGAAAGAGCTGCTGGTTTGTGTTTGCAGATATAGAT  600

seq1  TGGTATCTCATCTCTTAGATATGATGAAAAGTCATGGTCTTGCTTGGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCTCATCTCTTAGATATGATGAAAAGTCATGGTCTTGCTTGGGAT  650

seq1  TACCAGTCATTGAAATCAAAGGACCAGCATATCTAGGAGATAAACATGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGTCATTGAAATCAAAGGACCAGCATATCTAGGAGATAAACATGGA  700

seq1  TTTGCTACAGGGATTTAGCCTGAACCATTTGTGGAGGTTGGCCCATAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTACAGGGATTTAGCCTGAACCATTTGTGGAGGTTGGCCCATAACT  750

seq1  CTTTGTTGGGTGGTTTTCTTCTTGCCAGGGACTGGATTTGGAGGACACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTGGGTGGTTTTCTTCTTGCCAGGGACTGGATTTGGAGGACACAT  800

seq1  GGCAGCCAGAGGAGAATGGAAAGTGTGGAGAAGAAAAGCATGAAAAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCAGAGGAGAATGGAAAGTGTGGAGAAGAAAAGCATGAAAAAGAA  850

seq1  CGCAAAGACAGATGGAAACCAGCCTGGCTGTTTCCTCCGACTTCAGTAAT  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CGCAAAGACAGATGGAAACCAGCCTGGCTGTTTCTTCCGACTTCAGTAAT  900

seq1  GCCAATGTTTTGCAGAGGCTTCATCAGGCCTTCACCCTGAAGCTGGCCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATGTTTTGCAGAGGCTTCATCAGGCCTTCACCCTGAAGCTGGCCCA  950

seq1  GGGAACCGAAAATCTGAAAGGGATGGTACCATTGCAGAGAGAGTAGCTAT  1000
      |||||||| |||||||||| |||||||| |||||||||  ||||||||||
seq2  GGGAACCG-AAATCTGAAA-GGATGGTATCATTGCAGAAGGAGTAGCTAT  998

seq1  GTAACTAACCCATCAGTTACGTGCTTCTGCTCTCTATACTTCCTAGGAAC  1050
      || ||||||||||||||||||||| |||||||||||||||| ||| ||||
seq2  GT-ACTAACCCATCAGTTACGTGC-TCTGCTCTCTATACTT-CTAAGAAC  1045

seq1  TTCCTTTTCGATT  1063
      || ||||||||||
seq2  TT-CTTTTCGATT  1057