BAC Information

Click to search

BAC

Clone NameB6Ng01-135M02
Chromosome2 (Build37)X (Build37)
Map Location 95,935,774 - 95,936,486105,555,021 - 105,555,536
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042843
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135M02.bB6Ng01-135M02.g
ACCDH935714DH935715
length9311,079
definitionDH935714|Mus musculus domesticus DNA, BAC clone: B6Ng01-135M02, 5' end.DH935715|Mus musculus domesticus DNA, BAC clone: B6Ng01-135M02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(95,935,774 - 95,936,486)(105,555,021 - 105,555,536)
sequence
gaattcatccagtttgtgagatctctagtagaatataagcccctgttgga
ggatgggatacatcaaggtgtggaagactgggataaggtatagggattct
gaaatagtgagggtggagaattttgcaggggaggggcagcctacctggag
gtctcccttcaaagtctcaagtagagtaaagcaataattaattctccaca
taaaaatgcacatcatccttccgctcaactcgagactcgagccccgggct
accttgccagcagagtcttgcccaacacccgcaagggcccacacgggact
ccccactgaatcctaagacctctggtgagtggaacacagcgcctgcccca
atccaatcgcgcggaacctgagactgcggtacatagggaagcaggctacc
cgggcttgatctggggcacaaaccccttccactccactcgagccccgggc
taccttgccagctgagtcgcctgacacccacaagggcccacacaggattc
cacacgagatattaagacctctagtgagtggaacacaacttctgccagga
gtctggttcgaacaccagatatctgggtacctgccttgcaagaagagagc
ttgcctgcagagaatactctgcccactgaagctaaggagagtgctaccct
ccaggtctgcttatagaggctaacagagtcacctgaagaacaagctctta
acagtgacaactaaaacagctagcttcagagattaccagatggcaaaagg
caaacgtaagaatcctactaacaaaaatcaagacactcaccatcatcaga
acgcagcactcccaccccacctagtcctgggcaccccaacacaaccaaaa
atctagacccagatttaaaaacatttctcatgatgatgctagaggacatc
aggaaggactttcataagtcacttaaagaat
gaattctttgattcacatagacctgagctttttgcaaggagataagaatg
gatcaattctcattcttctacatgatgactgccagttgacacagtaccat
ttgttgatgattccactggatgggtttcactcctttgtcaaagatcaagt
gaacataggtgtgtgggttcatttctgggtcttcaattctgttccattga
tttatatgtctattgctgtaacagtatcatgcagattttatcacaattgc
tctgtagcatagcctgaggtgggggatgatggttccaccagaagttcttt
tattgttgagaatcattttttctatcctaggttttttttgttattccaga
agaatttgcaaattgtcctttctaactcagtgaagaatttagttggaatt
ttgatggggattgcactgaatctgtagattgctttttggaagatagccat
ttttactatattgatcctgccaatccataagcatgggaggtctttctgtc
ttttgaggtcttctttgatttttttcttcagagacttgaagttcttatca
cacagatctttcacttccttagttagagtcacaccaaggtattttatatt
acttgtgactattgtgaagggtgttggttccctaatttcattctcagcct
gtttatcctttttttagagaaaggtcactgatttgtttgagttaatctta
tatccatctacttcactgaagttatcagttttaggagttctctggtggaa
tttttagggtcacttacctatactatcacatcatctacaaatagtgacat
tttgatttcttcctttgcaatttgtattcctttgatttccttctcttgtc
taattgctctggctaggacttcaagcactatattgaatagataggagaga
ttgggcagccttgtctagtcctgattttagggagatatttcagtttctct
catttagtttaatgttggctattggtttactgtatataactcttattgtg
cttgggatgggcttgaaatcctgatttccaagactttttatcatgaatag
gtgttgactttcaatgctttctcagcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_95935774_95936486
seq2: B6Ng01-135M02.b_45_757

seq1  GAATTCATCCAGTTTGTGAGATCTCTAGTAGAATATAAGCCCCTGTTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCAGTTTGTGAGATCTCTAGTAGAATATAAGCCCCTGTTGGA  50

seq1  GGATGGGATACATCAAGGTGTGGAAGACTGGGATAAGGTATAGGGATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGATACATCAAGGTGTGGAAGACTGGGATAAGGTATAGGGATTCT  100

seq1  GAAATAGTGAGGGTGGAGAATTTTGCAGGGGAGGGGCAGCCTACCTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGTGAGGGTGGAGAATTTTGCAGGGGAGGGGCAGCCTACCTGGAG  150

seq1  GTCTCCCTTCAAAGTCTCAAGTAGAGTAAAGCAATAATTAATTCTCCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCTTCAAAGTCTCAAGTAGAGTAAAGCAATAATTAATTCTCCACA  200

seq1  TAAAAATGCACATCATCCTTCCGCTCAACTCGAGACTCGAGCCCCGGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGCACATCATCCTTCCGCTCAACTCGAGACTCGAGCCCCGGGCT  250

seq1  ACCTTGCCAGCAGAGTCTTGCCCAACACCCGCAAGGGCCCACACGGGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCCAGCAGAGTCTTGCCCAACACCCGCAAGGGCCCACACGGGACT  300

seq1  CCCCACTGAATCCTAAGACCTCTGGTGAGTGGAACACAGCGCCTGCCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTGAATCCTAAGACCTCTGGTGAGTGGAACACAGCGCCTGCCCCA  350

seq1  ATCCAATCGCGCGGAACCTGAGACTGCGGTACATAGGGAAGCAGGCTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATCGCGCGGAACCTGAGACTGCGGTACATAGGGAAGCAGGCTACC  400

seq1  CGGGCTTGATCTGGGGCACAAACCCCTTCCACTCCACTCGAGCCCCGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCTTGATCTGGGGCACAAACCCCTTCCACTCCACTCGAGCCCCGGGC  450

seq1  TACCTTGCCAGCTGAGTCGCCTGACACCCACAAGGGCCCACACAGGATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGCCAGCTGAGTCGCCTGACACCCACAAGGGCCCACACAGGATTC  500

seq1  CACACGAGATATTAAGACCTCTAGTGAGTGGAACACAACTTCTGCCAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGAGATATTAAGACCTCTAGTGAGTGGAACACAACTTCTGCCAGGA  550

seq1  GTCTGGTTCGAACACCAGATATCTGGGTACCTGCCTTGCAAGAAGAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTTCGAACACCAGATATCTGGGTACCTGCCTTGCAAGAAGAGAGC  600

seq1  TTGCCTGCAGAGAATACTCTGCCCACTGAAGCTAAGGAGAGTGCTACCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGCAGAGAATACTCTGCCCACTGAAGCTAAGGAGAGTGCTACCCT  650

seq1  CCAGGTCTGCTTATAGAGGCTAACAGAGTCACCTGAAGAACAAGCTCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCTGCTTATAGAGGCTAACAGAGTCACCTGAAGAACAAGCTCTTA  700

seq1  ACAGTGACAACTA  713
      |||||||||||||
seq2  ACAGTGACAACTA  713

seq1: chrX_105555021_105555536
seq2: B6Ng01-135M02.g_674_1147 (reverse)

seq1  GATGCTGAGAAAGCATTTGACAAAATCCAAAACCCATTCATGAT-AAAAG  49
      |||||||||||||||||     |||  ||| ||| ||||||||| |||||
seq2  GATGCTGAGAAAGCATT----GAAAGTCAACACCTATTCATGATAAAAAG  46

seq1  TCTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATATAAGCA  99
      ||||||||  ||||||| ||||| |||||| || || ||  |||  ||  
seq2  TCTTGGAA--ATCAGGATTTCAA-GCCCAT-CCCAAGCACAATAAGAGTT  92

seq1  ATCTACAGCAAACCAGTAGCCAACATGAAAGTAAATGGTGATAAGCTGGA  149
      || ||||| |||||| |||||||||| ||| ||||| | || || ||| |
seq2  ATATACAGTAAACCAATAGCCAACATTAAACTAAAT-GAGAGAAACTGAA  141

seq1  AGCAATCCCATTAAAATCAGGGACTAGACAAGGCTGTCCACTCTCTCCCT  199
      |   ||| |  |||||||| |||||||||||||||| ||| ||||| |||
seq2  A--TATCTCCCTAAAATCA-GGACTAGACAAGGCTGCCCAATCTCT-CCT  187

seq1  ACCTATTCAACATTGTACTTGAAGTCCTAGCCAGAGCAATTCAACAACAA  249
      | |||||||| || || ||||||||||||||||||||||||  |||| | 
seq2  ATCTATTCAATATAGTGCTTGAAGTCCTAGCCAGAGCAATTAGACAAGAG  237

seq1  AAGGAGATCCAGGGGATACAAATTGGAAAAGAAAAAGTCAAAGTATCACT  299
      ||||| ||| | || |||||||||| ||| ||| || ||||| | |||| 
seq2  AAGGAAATCAAAGGAATACAAATTGCAAAGGAAGAAATCAAAATGTCAC-  286

seq1  TTTTGCAGATGATATGATAGTATATTTTTTGCAGATGATATGATAGTATA  349
                               | |||| ||||||| ||||||||||
seq2  -------------------------TATTTGTAGATGATGTGATAGTATA  311

seq1  TATAAGTGAACCTAAAAGTTCCACCAGAGAACTCCTAAACCTGATAAACA  399
        ||||||| ||||||| ||||||||||||||||||||| |||||||   
seq2  GGTAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAAACTGATAA---  358

seq1  GCTTCAGTGAAGTATCTGGATATAAAATTAACTCAAACAAGTCAATGGCC  449
       |||||||||||||  ||||||||| |||||||||||||| ||| || ||
seq2  -CTTCAGTGAAGTAGATGGATATAAGATTAACTCAAACAAATCAGTGACC  407

seq1  TTTCTCTACACAAAGGATAAACAGGCTGAGAAAGAAATTAGGGAAACAAC  499
      |||||||| | ||||||||||||||||||||| |||||||||||| ||||
seq2  TTTCTCTAAAAAAAGGATAAACAGGCTGAGAATGAAATTAGGGAACCAAC  457

seq1  ACCCTTCTCAATAGTCA  516
      ||||||| |||||||||
seq2  ACCCTTCACAATAGTCA  474