BAC Information

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BAC

Clone NameB6Ng01-137J20
ChromosomeX (Build37)
Map Location 62,240,711 - 62,241,879
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666729, EG627470, 3830417A13Rik, Slitrk4, LOC100040011
Downstream geneCtag2, LOC671840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137J20.bB6Ng01-137J20.g
ACCDH937089DH937090
length1,1561,225
definitionDH937089|Mus musculus domesticus DNA, BAC clone: B6Ng01-137J20, 5' end.DH937090|Mus musculus domesticus DNA, BAC clone: B6Ng01-137J20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaaacatttctatgttcaacttttgtttataaccatatgacagt
cttgaatggatcaaagaatatatgacaaaaagaaatggaatttattaatt
ttttcaaaggaaatcaaatcgatagtaatggcaaaagttagggtgattaa
tctgcaaagaaaacatcaccatattatgctttcaggatttgagggaggac
attagggaagaacaatgatgagatctgcttcaaacagattttcagcatat
aaagatatcaaccacatagaagatatgtcactaatgtgtccaacaacagc
ttttctactccatatcccccaacttcttataatgggcagaaggacacact
gatttgaatgaacattagtggcatttaaagaattttcttttttaagtttc
taccttggacagtaaagttttctcataggaaaactttaaaggactgcagc
tgggctctaaaggtacttctcagaatacataaatttgtaatggatacaaa
tacttatacctaggcttcaatatataaccatggtgtcctagtgatgtcta
tatattgaaaatactaactataaactttagacctaatgattatgcatctt
tcaattatacaattttctttcatcattgtatcaataaaagcatatactat
ccattgcaaagcaatagggaatataaagccatgtagaagttataacaatg
gacaacaatgatgtctactcaagttcttagaccttaggagtatgcttgga
cacatggcaaaattttatagttaagttacaaatttaataaaatttattaa
tctactaaaggcccgattcctacatatgaccttaagtattataacaaatt
tttgttattttaaaacaaatcttgaattcccaatacttaaaattctgtaa
tctatccatgaagagattctgatttatatccaaatatttttgtggccatc
taaggaacattcagatttggagattcagattcaatatttatacacagctt
atcttacctactacagtagacataccaagtttcatttacagagctcattc
attctgtccctatgatataaaatgcttcatacaagaaaaagtcaaatgaa
actgtaggatcatattggtctggcattcttgaactattgcatatcaaata
agaaaa
gaattctttgtttaactctgtaccccattttttaatagggttatttgatt
ttctggagtccagcttcttgagttctttttatatattggctattattccc
ccattagatttaggattggtaaagatcctttcccaatctgttggtggcct
ttttgtcctgacagtgtcttttgccttacagaagctttgcaattttatga
ggtcccatttgttgattctcagtcttacagtacaagccattgttttacag
ttcagcatttttcccctgtgcccatatcttggaagcttttcctcactttc
tcctctttaagtttcagtgtctgtggtattatgtgtgtaggcagccgacg
cctaaaagatggcgctgggtatcaggacaccatggccataaacaacctta
ctgcacctgtgctagtcaccacttggcgccaaccactccccagtgggtgc
atgctaatgaagtgtcgacaggccgaccaatcccaggaggacacatagct
ctccccagtcctggggtgtatataagcagtcctccctgggttcctgaagt
ccccgtagcagtattgaggagttcctgcaataaggctgttgagaagaatc
catccgtgttgtgtcttccttgccagaagaggtgggcacgacaaattagt
ggcccgtatggggacccaaggatttcgtggattcagaacgttttagctga
agaacagctgtaccagtaagtctcccaaattgatccctgggtttaagggg
gatatgtttttctcgcccatagacccagtgtgggtagctcttgccattat
tgttttattttttgtaaaacacagcatggtacgagcttgtttagaagcta
aacggtatgtcaagggaagcggtaaaagcaagtcaaaaaattcttacaga
caagaaagtatgtcagaggaaaataaggaatgaatgagcagaaaaaagaa
aagagcgaaagggtgagaaagaaaaggaaagaaatggagaaattaagtaa
ctgtgatacagaaaggaaatagtgaagattattccctctctaaaggatta
atttatcagctcttgcttccactgacctcggagcttagttagatgagagc
tgactagaagaagagtcagctctgatgagagggtatggattgaatcagac
tgtcactactcagtctgacatgggggctatgcatatctgtatatcggaat
gtgtaaagtgaggaggagaagtgcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_62240711_62241879
seq2: B6Ng01-137J20.b_44_1199

seq1  GAATTCTAAACATTTCTATGTTCAACTTTTGTTTATAACCATATGACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAACATTTCTATGTTCAACTTTTGTTTATAACCATATGACAGT  50

seq1  CTTGAATGGATCAAAGAATATATGACAAAAAGAAATGGAATTTATTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATGGATCAAAGAATATATGACAAAAAGAAATGGAATTTATTAATT  100

seq1  TTTTCAAAGGAAATCAAATCGATAGTAATGGCAAAAGTTAGGGTGATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAAGGAAATCAAATCGATAGTAATGGCAAAAGTTAGGGTGATTAA  150

seq1  TCTGCAAAGAAAACATCACCATATTATGCTTTCAGGATTTGAGGGAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAAGAAAACATCACCATATTATGCTTTCAGGATTTGAGGGAGGAC  200

seq1  ATTAGGGAAGAACAATGATGAGATCTGCTTCAAACAGATTTTCAGCATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGAAGAACAATGATGAGATCTGCTTCAAACAGATTTTCAGCATAT  250

seq1  AAAGATATCAACCACATAGAAGATATGTCACTAATGTGTCCAACAACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATCAACCACATAGAAGATATGTCACTAATGTGTCCAACAACAGC  300

seq1  TTTTCTACTCCATATCCCCCAACTTCTTATAATGGGCAGAAGGACACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTACTCCATATCCCCCAACTTCTTATAATGGGCAGAAGGACACACT  350

seq1  GATTTGAATGAACATTAGTGGCATTTAAAGAATTTTCTTTTTTAAGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAATGAACATTAGTGGCATTTAAAGAATTTTCTTTTTTAAGTTTC  400

seq1  TACCTTGGACAGTAAAGTTTTCTCATAGGAAAACTTTAAAGGACTGCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGGACAGTAAAGTTTTCTCATAGGAAAACTTTAAAGGACTGCAGC  450

seq1  TGGGCTCTAAAGGTACTTCTCAGAATACATAAATTTGTAATGGATACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCTAAAGGTACTTCTCAGAATACATAAATTTGTAATGGATACAAA  500

seq1  TACTTATACCTAGGCTTCAATATATAACCATGGTGTCCTAGTGATGTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATACCTAGGCTTCAATATATAACCATGGTGTCCTAGTGATGTCTA  550

seq1  TATATTGAAAATACTAACTATAAACTTTAGACCTAATGATTATGCATCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGAAAATACTAACTATAAACTTTAGACCTAATGATTATGCATCTT  600

seq1  TCAATTATACAATTTTCTTTCATCATTGTATCAATAAAAGCATATACTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTATACAATTTTCTTTCATCATTGTATCAATAAAAGCATATACTAT  650

seq1  CCATTGCAAAGCAATAGGGAATATAAAGCCATGTAGAAGTTATAACAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCAAAGCAATAGGGAATATAAAGCCATGTAGAAGTTATAACAATG  700

seq1  GACAACAATGATGTCTACTCAAGTTCTTAGACCTTAGGAGTATGCTTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACAATGATGTCTACTCAAGTTCTTAGACCTTAGGAGTATGCTTGGA  750

seq1  CACATGGCAAAATTTTATAGTTAAGTTACAAATTTAATAAAATTTATTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGCAAAATTTTATAGTTAAGTTACAAATTTAATAAAATTTATTAA  800

seq1  TCTACT-AAGGCCCGATTCCTACATATGACCTTAAGTATTATAACAAATT  849
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTAAAGGCCCGATTCCTACATATGACCTTAAGTATTATAACAAATT  850

seq1  TTTGTTATTTTAAAACAAATCTTGAATTCCCAATACTTAAAATTCTGTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTATTTTAAAACAAATCTTGAATTCCCAATACTTAAAATTCTGTAA  900

seq1  TCTATCCATGAAGAGATTCTGATTTATATCCAAATATTTTTGTGGCCATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCATGAAGAGATTCTGATTTATATCCAAATATTTTTGTGGCCATC  950

seq1  TAAGGGAACATTCAGATTTGGAGAATTCAGATTCAAATATTTATACACAG  999
      ||| ||||||||||||||||||| |||||||||| |||||||||||||||
seq2  TAA-GGAACATTCAGATTTGGAG-ATTCAGATTC-AATATTTATACACAG  997

seq1  CTTATCTTACCTACTACAGTAGACATACCAAGTTTCATTTACAAGAGCTC  1049
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTTATCTTACCTACTACAGTAGACATACCAAGTTTCATTTAC-AGAGCTC  1046

seq1  ATTCATTCTGTCACCTATGATATAAAAATGCTTCCATACAAGAAACAGTC  1099
      |||||||||||| |||||||||| ||||||||| ||||||||||| ||||
seq2  ATTCATTCTGTC-CCTATGATAT-AAAATGCTT-CATACAAGAAAAAGTC  1093

seq1  AAAATAGAAACTGTAAGGATCCATA-TGGTCTGGCAATTCTAGAACTA-T  1147
      |||   |||||||| ||||| |||| ||||||||| ||||| |||||| |
seq2  AAA--TGAAACTGT-AGGAT-CATATTGGTCTGGC-ATTCTTGAACTATT  1138

seq1  GCATATATCAAAATAAAGAAAA  1169
      ||  ||||||||   |||||||
seq2  GC--ATATCAAA--TAAGAAAA  1156