BAC Information

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BAC

Clone NameB6Ng01-138K01
Chromosome8 (Build37)X (Build37)
Map Location 102,258,434 - 102,259,552107,330,708 - 107,331,226
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCdh8, A330008L17Rik, LOC667531
Downstream geneLOC100042069, LOC436054, LOC100042078, LOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138K01.bB6Ng01-138K01.g
ACCDH937833DH937834
length1,108980
definitionDH937833|Mus musculus domesticus DNA, BAC clone: B6Ng01-138K01, 5' end.DH937834|Mus musculus domesticus DNA, BAC clone: B6Ng01-138K01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(102,258,434 - 102,259,552)(107,330,708 - 107,331,226)
sequence
gaattcaggctcagaagaattttcttctctcagtgcttacgtactgtatt
atattagttaacatagaaccgaaggataccaaacctcaaattataagcca
ctacaccggtttataattttcagatgtcttatggtttcattaccacaacc
actttatatccactgttattttttccagactctcattattctatgcactt
tcttctattctttatgtacctttgtgttatgtttaaatattttaaaagat
atctagagtcccagttagcattgagagcaaggtttagctctatgtagttg
cctgcattatctgatcaatatgaaataaatcttattcatgtgtgagattt
caaagccttaagctataactactctcctagttcactttctgttcttatca
ctgaatgtttacaaagactgaaggcttatttgtcttactattctaaaagc
tgggaggtctgccttttgacggattgaatctgctgagactttcttgctca
tgaggaatatttgcagaatcccaaggcagtgtacagcacccacatagtta
tgtgcatctttcttctatctcttataggtaactttcaaaactgagggctc
cagtctcccgaggttatcagatcctccttactgtgcaatggctatgcaca
aaaatcaatacatatgactttgaagattcactttcaacataagttttaag
gtgacacacatccagaccatagaagctgcatttctttcattgtcctcata
aaaccaggagccttggttcagtatgttatcaaatatattggctaaaagca
ctagacagtgatcaaaatctgctttgtgatatttaccaagtttaagacca
tagctgatacctacaatccatctctgccttggcttcctaaatcatgaaat
ggagttgcacaatacctgctgaataaagttattattgtaagggcagaaga
actgataaatggtaagaacatcaacttctcttccaggaagggcccaattt
gattctactacccacatggcgactctaattcatgtgtactctaattcccc
ggatctcatgctctatttggactcatgcccatcatgtgggtgcacgacat
aggaaaaa
gaattcctgatctttccaagatttttatcatgaaagggtgttggattttg
tcaaatgatttctctgcacctaaggagatgattatgtggtttttgtcttt
gagtttgtttatataatggattacgttgatggatttctgtatattaaacc
atccctgcatccttggaatgaaacctacttgttcaggatagatgattgtt
ttgatgtgttcttggatttggttagtgagaattttattgagtatttttgc
atcgatattcataagagaacttggtttgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaattgtggcttcatagaatgagttg
ggtagagtaccttctgcttctattttgtggaatagtttgtgaagaactgg
aattagatcttctttgaaggtctgatagaagtctgcactaaacccatctg
gtcctgggctttttttggtttggagactattaatgactgcttatatttct
ttaggggctatagcactgtttagatcattaacctgatcctgatttaactt
tgttaccttgtatctgtctagaaatttttccattttatccaggttttcca
gttttggtgagtatacccttttgttgaaggatctgatggtgttttgaatt
tcttcaggatctgttgttatgtctccctttcattccttatttttgttaat
taggatgctgtccctgtgccctctagtgagtctggctaagggttttatct
atcttgttgattttctcaaagaaccagctcctcctttgggttgattcttg
aatagttcctcttgtttccacttggttgatttcacccctgagtttgatta
tttcctgctgtgtctcctcttgggtgaatttgcttccttttgtttagagc
tttttcaaggtgttgtcagctgctagtgtgtgctctctctagttcctttt
tggaagcactcgagctatgagttttcttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_102258434_102259552
seq2: B6Ng01-138K01.b_45_1152 (reverse)

seq1  TTTTTCCTGTATGTCTGTGCA-CCACATGTATGTGGCATGGAGTCCAGAA  49
      |||||||  |||||| ||||| ||||||| ||| ||||| ||||||| ||
seq2  TTTTTCC--TATGTC-GTGCACCCACATG-ATG-GGCAT-GAGTCCA-AA  43

seq1  TAGAGCATGAGATCCTGTGGAATTAGAGTTACACATGAATATGAGTTGCC  99
      ||||||||||||||| | |||||||||| |||||||||||  |||| |||
seq2  TAGAGCATGAGATCC-GGGGAATTAGAG-TACACATGAATTAGAGTCGCC  91

seq1  ATGTGGGTAGTAGGAATCAAATTTGGGCCTTCCTGGAAGAGAAGTTGATG  149
      |||||||||||| |||||||||| || |||||||||||||||||||||||
seq2  ATGTGGGTAGTA-GAATCAAATTGGGCCCTTCCTGGAAGAGAAGTTGATG  140

seq1  TTCTTTACCATTTATCAGTTCTTCTGGCCCTACAATAATAACTTTATTCA  199
      ||| |||||||||||||||||||||| || ||||||||||||||||||||
seq2  TTC-TTACCATTTATCAGTTCTTCTGCCCTTACAATAATAACTTTATTCA  189

seq1  GCAGGTATTGTTGCAACTCCATTTCATGATTTAGGAAGCCAAGGCAGAGA  249
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTATTG-TGCAACTCCATTTCATGATTTAGGAAGCCAAGGCAGAGA  238

seq1  TGGATTGTAGGTATCAGCTATGGTCTTAAACTTGGTAAATATCACAAAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGTAGGTATCAGCTATGGTCTTAAACTTGGTAAATATCACAAAGC  288

seq1  AGATTTTGATCACTGTCTAGTGCTTTTAGCCAATATATTTGATAACATAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGATCACTGTCTAGTGCTTTTAGCCAATATATTTGATAACATAC  338

seq1  TGAACCAAGGCTCCTGGTTTTATGAGGACAATGAAAGAAATGCAGCTTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCAAGGCTCCTGGTTTTATGAGGACAATGAAAGAAATGCAGCTTCT  388

seq1  ATGGTCTGGATGTGTGTCACCTTAAAACTTATGTTGAAAGTGAATCTTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTGGATGTGTGTCACCTTAAAACTTATGTTGAAAGTGAATCTTCA  438

seq1  AAGTCATATGTATTGATTTTTGTGCATAGCCATTGCACAGTAAGGAGGAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATATGTATTGATTTTTGTGCATAGCCATTGCACAGTAAGGAGGAT  488

seq1  CTGATAACCTCGGGAGACTGGAGCCCTCAGTTTTGAAAGTTACCTATAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAACCTCGGGAGACTGGAGCCCTCAGTTTTGAAAGTTACCTATAAG  538

seq1  AGATAGAAGAAAGATGCACATAACTATGTGGGTGCTGTACACTGCCTTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAAGAAAGATGCACATAACTATGTGGGTGCTGTACACTGCCTTGG  588

seq1  GATTCTGCAAATATTCCTCATGAGCAAGAAAGTCTCAGCAGATTCAATCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGCAAATATTCCTCATGAGCAAGAAAGTCTCAGCAGATTCAATCC  638

seq1  GTCAAAAGGCAGACCTCCCAGCTTTTAGAATAGTAAGACAAATAAGCCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAAGGCAGACCTCCCAGCTTTTAGAATAGTAAGACAAATAAGCCTT  688

seq1  CAGTCTTTGTAAACATTCAGTGATAAGAACAGAAAGTGAACTAGGAGAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTTGTAAACATTCAGTGATAAGAACAGAAAGTGAACTAGGAGAGT  738

seq1  AGTTATAGCTTAAGGCTTTGAAATCTCACACATGAATAAGATTTATTTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAGCTTAAGGCTTTGAAATCTCACACATGAATAAGATTTATTTCA  788

seq1  TATTGATCAGATAATGCAGGCAACTACATAGAGCTAAACCTTGCTCTCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATCAGATAATGCAGGCAACTACATAGAGCTAAACCTTGCTCTCAA  838

seq1  TGCTAACTGGGACTCTAGATATCTTTTAAAATATTTAAACATAACACAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAACTGGGACTCTAGATATCTTTTAAAATATTTAAACATAACACAAA  888

seq1  GGTACATAAAGAATAGAAGAAAGTGCATAGAATAATGAGAGTCTGGAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACATAAAGAATAGAAGAAAGTGCATAGAATAATGAGAGTCTGGAAAA  938

seq1  AATAACAGTGGATATAAAGTGGTTGTGGTAATGAAACCATAAGACATCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAGTGGATATAAAGTGGTTGTGGTAATGAAACCATAAGACATCTG  988

seq1  AAAATTATAAACCGGTGTAGTGGCTTATAATTTGAGGTTTGGTATCCTTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATAAACCGGTGTAGTGGCTTATAATTTGAGGTTTGGTATCCTTC  1038

seq1  GGTTCTATGTTAACTAATATAATACAGTACGTAAGCACTGAGAGAAGAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTATGTTAACTAATATAATACAGTACGTAAGCACTGAGAGAAGAAA  1088

seq1  ATTCTTCTGAGCCTGAATTC  1119
      ||||||||||||||||||||
seq2  ATTCTTCTGAGCCTGAATTC  1108

seq1: chrX_107330708_107331226
seq2: B6Ng01-138K01.g_530_1045 (reverse)

seq1  AGAAGAAAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGC  50
      ||||||||||||||||||| |||||| ||||||||| |||||||||||||
seq2  AGAAGAAAACTCATAGCTC-GAGTGCTTCCAAAAAGGAACTAGAGAGAGC  49

seq1  ACAAACTAGCAGCTTGACAAAACAGCT---AAAAGCTCTAGAATAAAAGG  97
      ||| ||||||||| ||||  |||| ||   |||||||||| || ||||||
seq2  ACACACTAGCAGC-TGAC--AACACCTTGAAAAAGCTCTA-AACAAAAGG  95

seq1  AAGCAAATTCAGCCAAGAAGAGTAGATGGCAGGAAATAATCAAACTCAGG  147
      ||||||||||| |||||| ||| | |  ||||||||||||||||||||||
seq2  AAGCAAATTCACCCAAGAGGAG-ACACAGCAGGAAATAATCAAACTCAGG  144

seq1  AGTGAAAGCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATCAACCA  197
       |||||| ||||||||||||||||||| ||||||||| ||||||||||| 
seq2  GGTGAAATCAACCAAGTGGAAACAAGAGGAACTATTC-AAGAATCAACCC  193

seq1  AAAAAAGGAGCTGGTTCTTTGAGAAAACCAACAAGATAGAT-AAACCCTT  246
      |||  |||||||||||||||||||||| ||||||||||||| ||||||||
seq2  AAAGGAGGAGCTGGTTCTTTGAGAAAATCAACAAGATAGATAAAACCCTT  243

seq1  AGCCAGACACACTAGAGGGCACAGGGACAGCATACTAATTAAC-AAAATC  295
      |||||||| |||||||||||||||||||||||| ||||||||| ||||| 
seq2  AGCCAGACTCACTAGAGGGCACAGGGACAGCATCCTAATTAACAAAAATA  293

seq1  AGAAATGAAAAGGGAGACATAAAAACAGATCCTGAAGAAATCCAAAACAC  345
      || |||| |||||||||||||| |||||||||||||||||| ||||||||
seq2  AGGAATG-AAAGGGAGACATAACAACAGATCCTGAAGAAATTCAAAACAC  342

seq1  CATCAGATCTTTCTATAAAAGGCTATACTTAACAAAACTGGAAAACCTGG  395
      ||||||||| ||| | |||||| |||||| | ||||||||||||||||||
seq2  CATCAGATCCTTCAACAAAAGGGTATACTCACCAAAACTGGAAAACCTGG  392

seq1  AAAAAATGGACAAATTTCTAGACAGATACCAGGTACCAAAGTTAAATCAG  445
      | |||||||| |||||||||||||||||| ||||| ||||||||||||||
seq2  ATAAAATGGAAAAATTTCTAGACAGATACAAGGTAACAAAGTTAAATCAG  442

seq1  GATCAGGTTAATGATCTAAACAGTCCTATATCCCCTACAGAAATAGAAGC  495
      |||||||||||||||||||||||| ||||| |||||| ||||||| ||||
seq2  GATCAGGTTAATGATCTAAACAGTGCTATAGCCCCTAAAGAAATATAAGC  492

seq1  AGTCATTAATACTCTCCCAACCAA  519
      ||||||||||| ||||| ||||||
seq2  AGTCATTAATAGTCTCCAAACCAA  516