BAC Information

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BAC

Clone NameB6Ng01-139B09
ChromosomeX (Build37)
Map Location 45,575,247 - 45,719,431
singlet/doubletdoublet
Overlap geneUtp14a, LOC637576, Bcorl1
Upstream geneEG434775, LOC236775, LOC100040133, LOC100040145, EG624187, Smarca1, LOC676253, Ocrl, LOC270596, LOC665672, Apln, Xpnpep2, 1200013B08Rik, Zdhhc9
Downstream geneElf4, Aifm1, Rab33a, Suhw3, Slc25a14, Gpr119, Rbmx2, LOC665752, Gm595, EG637758, LOC100040295, Enox2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139B09.bB6Ng01-139B09.g
ACCDH938162DH938163
length1,169830
definitionDH938162|Mus musculus domesticus DNA, BAC clone: B6Ng01-139B09, 5' end.DH938163|Mus musculus domesticus DNA, BAC clone: B6Ng01-139B09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,575,247 - 45,576,428)(45,718,602 - 45,719,431)
sequence
gaattcttgcagaaagcatagctgatgacaatgtcctaaagaggaaaagc
atagctcatcaagaaacagcaaaagggccattggactgttgagaaactag
caagaggaccagcaagagtggcaggggtgggaccggtgaggcagactatt
gtgtgaagcttaggtagccattgtaaagacacggtcttttgttctgatga
gccgtgatgacagagtttaagttttaagtcttaatagaatctttgcagct
gctgtgttaacaatagactaaaagggggcaaaggtagaagcagagaaacc
agtgaccagaatattacaagaatccattttctcttaatcatttcttagtt
tgccaactgttttcagcatctatttcttcccactgtgatagatggggggg
ctaaaagctcacttacatcacagcaccactttctctttccctaatatatt
attatttctaaaattcttctctttagttccctccacaacagaaaacagat
aataatgtgcatctttttgtcttttgttttgttgttgttgttttgcgcct
ttataaacctataggtaatatctcgagatttcacactttttttggttttt
caagtcagggtttctctgtatcggcctggctgtcctggaactcactttgt
agagcaggttggcctcgaactcagaaagcgcctgcctctgcctcccaagt
gttgggattaaaggcgtgcgccaccacgcccagctttcacacttcttaaa
attagaatgttggtgtctttatactttttctttcacctgtaattctactt
tctagaggcttttacatttaatgttggttgttattctgctgttgctatgt
attcaaatgctaaattctgtaccctaaagatctggtttgctcggaggatg
agcaatttccatgtactccagcttttgttatgcaaacctttattccctaa
tttaaactattagttaaataaaggtggctacagcccatactggaatagag
ttagcggggttcacttgcttgactgggagatgcagtagcacaccaggaga
taaggaaaaggaaaggagagagaaaaatcgtaaataagatgggaaggagg
aggttctcttataaattgatgacagataccattgcctggattaattgatc
tcaggacagactgtctgga
gaattctctaaacttcaggtaagaatcctaaaacatgtgccatttgacaa
aacgaacaaataaaaggatcacacgctaaagtaaagtcgaaggacaagtg
gtggctccataccggccgctggccgctttaagtgcagcaggaacccggcc
cctgtgctcaggagccatatcaatagggcagccgcctgggtgggagtggc
tgcagaggaggtagggggtcaaagaacaaagctgcagcaagttttctggg
tgggcaaagcacagggctgctctgcctgctctttgtttgggtttgcctgc
catctttggagccctgccagagatccaatacagcccgtgaagaaaagtca
gcagcgtctgccttagcgaccacactctagtctaaagggtatttgggggt
gcctgcagtcaactccagcaaggaggagcacccctgcaaataactccctc
cctccgactgaaacacagactttctaactgtacctggggcaagagaagca
agaatggcaatgaggatcggagccggctccagaaggggctaatcaagggg
gaaaggcttgtcccctttaacaaacagctagggtggcagaagtgggacag
ttccaccactggaaatgactgctggtaacacaggactgtgaggcaagggc
tttggaccgcagttaggggtcttgaggaagaggagagatggagggctaca
gagaagggaaaacacacttttcacatcaactcctgagagagcagaaaagc
aggacctatatggagccagccttgggctggagaagcatgttccaactaga
ctctccagggatggtttagggggagggcgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_45575247_45576428
seq2: B6Ng01-139B09.b_47_1215

seq1  GAATTCTTGCAGAAAGCATAGCTGATGACAATGTCCTAAAGAGGAAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCAGAAAGCATAGCTGATGACAATGTCCTAAAGAGGAAAAGC  50

seq1  ATAGCTCATCAAGAAACAGCAAAAGGGCCATTGGACTGTTGAGAAACTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCATCAAGAAACAGCAAAAGGGCCATTGGACTGTTGAGAAACTAG  100

seq1  CAAGAGGACCAGCAAGAGTGGCAGGGGTGGGACCGGTGAGGCAGACTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGACCAGCAAGAGTGGCAGGGGTGGGACCGGTGAGGCAGACTATT  150

seq1  GTGTGAAGCTTAGGTAGCCATTGTAAAGACACGGTCTTTTGTTCTGATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAGCTTAGGTAGCCATTGTAAAGACACGGTCTTTTGTTCTGATGA  200

seq1  GCCGTGATGACAGAGTTTAAGTTTTAAGTCTTAATAGAATCTTTGCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGATGACAGAGTTTAAGTTTTAAGTCTTAATAGAATCTTTGCAGCT  250

seq1  GCTGTGTTAACAATAGACTAAAAGGGGGCAAAGGTAGAAGCAGAGAAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTTAACAATAGACTAAAAGGGGGCAAAGGTAGAAGCAGAGAAACC  300

seq1  AGTGACCAGAATATTACAAGAATCCATTTTCTCTTAATCATTTCTTAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCAGAATATTACAAGAATCCATTTTCTCTTAATCATTTCTTAGTT  350

seq1  TGCCAACTGTTTTCAGCATCTATTTCTTCCCACTGTGATAGATGGGGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACTGTTTTCAGCATCTATTTCTTCCCACTGTGATAGATGGGGGGG  400

seq1  CTAAAAGCTCACTTACATCACAGCACCACTTTCTCTTTCCCTAATATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGCTCACTTACATCACAGCACCACTTTCTCTTTCCCTAATATATT  450

seq1  ATTATTTCTAAAATTCTTCTCTTTAGTTCCCTCCACAACAGAAAACAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTCTAAAATTCTTCTCTTTAGTTCCCTCCACAACAGAAAACAGAT  500

seq1  AATAATGTGCATCTTTTTGTCTTTTGTTTTGTTGTTGTTGTTTTGCGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGTGCATCTTTTTGTCTTTTGTTTTGTTGTTGTTGTTTTGCGCCT  550

seq1  TTATAAACCTATAGGTAATATCTCGAGATTTCACACTTTTTTTGGTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAACCTATAGGTAATATCTCGAGATTTCACACTTTTTTTGGTTTTT  600

seq1  CAAGTCAGGGTTTCTCTGTATCGGCCTGGCTGTCCTGGAACTCACTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAGGGTTTCTCTGTATCGGCCTGGCTGTCCTGGAACTCACTTTGT  650

seq1  AGAGCAGGTTGGCCTCGAACTCAGAAAGCGCCTGCCTCTGCCTCCCAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGGTTGGCCTCGAACTCAGAAAGCGCCTGCCTCTGCCTCCCAAGT  700

seq1  GTTGGGATTAAAGGCGTGCGCCACCACGCCCAGCTTTCACACTTCTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGATTAAAGGCGTGCGCCACCACGCCCAGCTTTCACACTTCTTAAA  750

seq1  ATTAGAATGTTGGTGTCTTTATACTTTTTCTTTCACCTGTAATTCTACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAATGTTGGTGTCTTTATACTTTTTCTTTCACCTGTAATTCTACTT  800

seq1  TCTAGAGGCTTTTACATTTAATGTTGGTTGTTATTCTGCTGTTGCTATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGGCTTTTACATTTAATGTTGGTTGTTATTCTGCTGTTGCTATGT  850

seq1  ATTCAAATGCTAAATTCTGTACCCT-AAGATCTGG-TTGCTCGGA-GATG  897
      ||||||||||||||||||||||||| ||||||||| ||||||||| ||||
seq2  ATTCAAATGCTAAATTCTGTACCCTAAAGATCTGGTTTGCTCGGAGGATG  900

seq1  AGCAAATTCCCATGTACTCCAGCTTTTGTTATGCAAACC-TTATTCCCTA  946
      ||| |||| |||||||||||||||||||||||||||||| ||||||||||
seq2  AGC-AATTTCCATGTACTCCAGCTTTTGTTATGCAAACCTTTATTCCCTA  949

seq1  ATTTAAAACTATTAGTTAAATAAAGGTGGCTACAGCCCATACTGGAATAG  996
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTT-AAACTATTAGTTAAATAAAGGTGGCTACAGCCCATACTGGAATAG  998

seq1  AGGTAAGCGGGGTTTCACTTGCTTGACTGGGAGATGCAGGTAGGCACCAA  1046
      | || ||||||| ||||||||||||||||||||||||| ||| ||||  |
seq2  A-GTTAGCGGGG-TTCACTTGCTTGACTGGGAGATGCA-GTA-GCAC--A  1042

seq1  CCAGGAGAAGAAGGAGAAAGGAGAGGGAGAGAGAAGAAGCGTAGAAGAAG  1096
      ||||||| | ||||| |||||| | |||||||||| || |||| || |||
seq2  CCAGGAG-ATAAGGA-AAAGGA-AAGGAGAGAGAAAAATCGTA-AATAAG  1088

seq1  AAGGGAGAGGAGGAGG-TCTCTTAGACA-TGATGGACCAGGAACACATGC  1144
      | |||| ||||||||| ||||||| | | |||||   |||  ||   |||
seq2  ATGGGA-AGGAGGAGGTTCTCTTATAAATTGATG--ACAGATACCATTGC  1135

seq1  CTGAGTTAAATGCACCCAACCCAGGACAGACTG-CTGGA  1182
      |||  |||| ||     | | |||||||||||| |||||
seq2  CTGGATTAATTG-----ATCTCAGGACAGACTGTCTGGA  1169

seq1: chrX_45718602_45719431
seq2: B6Ng01-139B09.g_70_899 (reverse)

seq1  GCGCCCTCCCCCTAAACCATCCCTGGAGAGTCTAGTTGGAACATGCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCCTCCCCCTAAACCATCCCTGGAGAGTCTAGTTGGAACATGCTTCT  50

seq1  CCAGCCCAAGGCTGGCTCCATATAGGTCCTGCTTTTCTGCTCTCTCAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCAAGGCTGGCTCCATATAGGTCCTGCTTTTCTGCTCTCTCAGGA  100

seq1  GTTGATGTGAAAAGTGTGTTTTCCCTTCTCTGTAGCCCTCCATCTCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGTGAAAAGTGTGTTTTCCCTTCTCTGTAGCCCTCCATCTCTCCT  150

seq1  CTTCCTCAAGACCCCTAACTGCGGTCCAAAGCCCTTGCCTCACAGTCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCAAGACCCCTAACTGCGGTCCAAAGCCCTTGCCTCACAGTCCTG  200

seq1  TGTTACCAGCAGTCATTTCCAGTGGTGGAACTGTCCCACTTCTGCCACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCAGCAGTCATTTCCAGTGGTGGAACTGTCCCACTTCTGCCACCC  250

seq1  TAGCTGTTTGTTAAAGGGGACAAGCCTTTCCCCCTTGATTAGCCCCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTTTGTTAAAGGGGACAAGCCTTTCCCCCTTGATTAGCCCCTTCT  300

seq1  GGAGCCGGCTCCGATCCTCATTGCCATTCTTGCTTCTCTTGCCCCAGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCGGCTCCGATCCTCATTGCCATTCTTGCTTCTCTTGCCCCAGGTA  350

seq1  CAGTTAGAAAGTCTGTGTTTCAGTCGGAGGGAGGGAGTTATTTGCAGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGAAAGTCTGTGTTTCAGTCGGAGGGAGGGAGTTATTTGCAGGGG  400

seq1  TGCTCCTCCTTGCTGGAGTTGACTGCAGGCACCCCCAAATACCCTTTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTCCTTGCTGGAGTTGACTGCAGGCACCCCCAAATACCCTTTAGA  450

seq1  CTAGAGTGTGGTCGCTAAGGCAGACGCTGCTGACTTTTCTTCACGGGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTGTGGTCGCTAAGGCAGACGCTGCTGACTTTTCTTCACGGGCTG  500

seq1  TATTGGATCTCTGGCAGGGCTCCAAAGATGGCAGGCAAACCCAAACAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGATCTCTGGCAGGGCTCCAAAGATGGCAGGCAAACCCAAACAAAG  550

seq1  AGCAGGCAGAGCAGCCCTGTGCTTTGCCCACCCAGAAAACTTGCTGCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCAGAGCAGCCCTGTGCTTTGCCCACCCAGAAAACTTGCTGCAGC  600

seq1  TTTGTTCTTTGACCCCCTACCTCCTCTGCAGCCACTCCCACCCAGGCGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTTTGACCCCCTACCTCCTCTGCAGCCACTCCCACCCAGGCGGC  650

seq1  TGCCCTATTGATATGGCTCCTGAGCACAGGGGCCGGGTTCCTGCTGCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTATTGATATGGCTCCTGAGCACAGGGGCCGGGTTCCTGCTGCACT  700

seq1  TAAAGCGGCCAGCGGCCGGTATGGAGCCACCACTTGTCCTTCGACTTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCGGCCAGCGGCCGGTATGGAGCCACCACTTGTCCTTCGACTTTAC  750

seq1  TTTAGCGTGTGATCCTTTTATTTGTTCGTTTTGTCAAATGGCACATGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCGTGTGATCCTTTTATTTGTTCGTTTTGTCAAATGGCACATGTTT  800

seq1  TAGGATTCTTACCTGAAGTTTAGAGAATTC  830
      ||||||||||||||||||||||||||||||
seq2  TAGGATTCTTACCTGAAGTTTAGAGAATTC  830