MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-139D11
Chromosome	X (Build37)
Map Location	25,256,097 - 25,257,186
singlet/doublet	singlet
Overlap gene	LOC664810
Upstream gene	EG546282, LOC100040417, LOC100040428, LOC100040433, Xmr, LOC100038968, LOC100038977, LOC100038997
Downstream gene	EG382275, LOC100039030, LOC100039065, LOC100039078, LOC100039003, Slx, LOC100039120, LOC619914, LOC100039039
Link	Open Mouse BAC browser

Click to get alignment info.

name	EG546282 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:546282 MGI:3646322
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040417 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040417
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 ESTs, 5 Proteins pseudo : _no_value

name	LOC100040428 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040428
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 66 ESTs

name	LOC100040433 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040433
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 ESTs, 2 Proteins pseudo : _no_value

name	Xmr (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:382277
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100038968 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038968
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 5 Proteins pseudo : _no_value

name	LOC100038977 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038977
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 3 ESTs, 5 Proteins

name	LOC100038997 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038997
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 5 Proteins

name	LOC664810 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:664810
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 5 Proteins pseudo : _no_value

name	EG382275 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:382275 MGI:3703318
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039030 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039030
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 9 ESTs, 5 Proteins

name	LOC100039065 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039065
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 13 ESTs, 5 Proteins

name	LOC100039078 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039078
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 90 ESTs, 1 Protein

name	LOC100039003 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039003
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 5 Proteins

name	Slx (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:664829 MGI:99543
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 7 ESTs, 5 Proteins

name	LOC100039120 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039120
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 10 ESTs, 5 Proteins

name	LOC619914 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:619914
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 5 Proteins pseudo : _no_value

name	LOC100039039 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039039
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs

name	EG546282 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126090645 GeneID:546282 MGI:3646322
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG546282 transcript_id : NM_001081657.1

name	LOC100040428 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271221 GeneID:100040428
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 66 ESTs product : hypothetical protein LOC100040428 transcript_id : XM_001474898.1

name	Xmr (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:100816606 GeneID:382277
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Xmr protein transcript_id : NM_001040669.1

name	LOC100038977 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271231 GeneID:100038977
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 3 ESTs, 5 Proteins product : hypothetical protein LOC100038977, transcript variant 2 transcript_id : XM_001472083.1

name	LOC100038977 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271229 GeneID:100038977
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs, 5 Proteins product : hypothetical protein LOC100038977, transcript variant 1 transcript_id : XM_001472060.1

name	LOC100038997 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271233 GeneID:100038997
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 5 Proteins product : similar to XMR transcript_id : XM_001472117.1

name	EG382275 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801953 GeneID:382275 MGI:3703318
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG382275 transcript_id : NM_001025607.2

name	LOC100039030 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271240 GeneID:100039030
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 9 ESTs, 5 Proteins product : similar to Xmr protein, transcript variant 2 transcript_id : XM_001472195.1

name	LOC100039030 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271238 GeneID:100039030
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 7 ESTs, 5 Proteins product : similar to Xmr protein, transcript variant 1 transcript_id : XM_001472174.1

name	LOC100039065 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271246 GeneID:100039065
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 12 ESTs, 5 Proteins product : similar to Sycp3 like X-linked, transcript variant 2 transcript_id : XM_001472332.1

name	LOC100039065 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271244 GeneID:100039065
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 11 ESTs, 5 Proteins product : similar to Sycp3 like X-linked, transcript variant 1 transcript_id : XM_001472304.1

name	LOC100039078 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271248 GeneID:100039078
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 90 ESTs, 1 Protein product : similar to RIKEN cDNA 1810037I17 gene transcript_id : XM_001472358.1

name	LOC100039003 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271235 GeneID:100039003
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 5 Proteins product : similar to Xmr protein transcript_id : XM_001472071.1

name	Slx (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407127 GeneID:664829 MGI:99543
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 6 ESTs, 5 Proteins product : Sycp3 like X-linked, transcript variant 2 transcript_id : XM_973255.1

name	Slx (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407129 GeneID:664829 MGI:99543
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 7 ESTs, 5 Proteins product : Sycp3 like X-linked, transcript variant 3 transcript_id : XM_973298.1

name	LOC100039120 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271252 GeneID:100039120
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 10 ESTs, 5 Proteins product : similar to Xlr-related, meiosis regulated, transcript variant 2 transcript_id : XM_001472448.1

name	LOC100039120 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271250 GeneID:100039120
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 8 ESTs, 5 Proteins product : similar to Xlr-related, meiosis regulated, transcript variant 1 transcript_id : XM_001472427.1

name	LOC100039039 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271242 GeneID:100039039
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs product : similar to pol protein transcript_id : XM_001472138.1

name	EG546282 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126090646 GeneID:546282 MGI:3646322
definition	codon_start : 1 note : novel protein similar to Xlr-related, meiosis regulated (Xmr) product : hypothetical protein LOC546282 protein_id : NP_001075126.1

name	LOC100040428 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271222 GeneID:100040428
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474948.1

name	Xmr (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:100816607 GeneID:382277
definition	codon_start : 1 product : Xmr protein protein_id : NP_001035759.1

name	LOC100038977 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271230 GeneID:100038977
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_001472110.1

name	LOC100038977 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271232 GeneID:100038977
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_001472133.1

name	LOC100038997 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271234 GeneID:100038997
definition	codon_start : 1 product : similar to XMR protein_id : XP_001472167.1

name	EG382275 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71037366 GeneID:382275 MGI:3703318
definition	codon_start : 1 note : novel protein similar to Xlr-related, meiosis regulated (Xmr) product : similar to XMR protein_id : NP_001020778.1

name	LOC100039030 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271239 GeneID:100039030
definition	codon_start : 1 product : similar to Xmr protein isoform 1 protein_id : XP_001472224.1

name	LOC100039030 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271241 GeneID:100039030
definition	codon_start : 1 product : similar to Xmr protein isoform 2 protein_id : XP_001472245.1

name	LOC100039065 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271245 GeneID:100039065
definition	codon_start : 1 product : similar to Sycp3 like X-linked isoform 1 protein_id : XP_001472354.1

name	LOC100039065 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271247 GeneID:100039065
definition	codon_start : 1 product : similar to Sycp3 like X-linked isoform 2 protein_id : XP_001472382.1

name	LOC100039078 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271249 GeneID:100039078
definition	codon_start : 1 product : similar to RIKEN cDNA 1810037I17 gene protein_id : XP_001472408.1

name	LOC100039003 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271236 GeneID:100039003
definition	codon_start : 1 product : similar to Xmr protein protein_id : XP_001472121.1

name	Slx (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407128 GeneID:664829 MGI:99543
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_978349.1

name	Slx (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407130 GeneID:664829 MGI:99543
definition	codon_start : 1 product : hypothetical protein isoform 3 protein_id : XP_978392.1

name	LOC100039120 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271251 GeneID:100039120
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_001472477.1

name	LOC100039120 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271253 GeneID:100039120
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_001472498.1

name	LOC100039039 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271243 GeneID:100039039
definition	codon_start : 1 product : similar to pol protein protein_id : XP_001472188.1

name	LOC100040417 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271220 GeneID:100040417
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 ESTs, 5 Proteins product : similar to XMR pseudo : _no_value transcript_id : XR_031969.1

name	LOC100040433 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271223 GeneID:100040433
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 ESTs, 2 Proteins product : similar to Xlr-like pseudo : _no_value transcript_id : XR_031984.1

name	LOC100038968 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271228 GeneID:100038968
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 5 Proteins product : similar to Sycp3 like X-linked pseudo : _no_value transcript_id : XR_030540.1

name	LOC664810 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271237 GeneID:664810
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 5 Proteins product : hypothetical LOC664810 pseudo : _no_value transcript_id : XR_001649.2

name	LOC619914 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271254 GeneID:619914
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 5 Proteins product : similar to Sycp3 like X-linked pseudo : _no_value transcript_id : XR_030717.1

clone name	MSMg01-304I16
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-451D23
singlet/doublet	singlet
plural/unique	plural

clone name	B6Ng01-316J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232P15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-291H09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348C17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293F21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043I05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312C12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076L14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-258G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103O19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-349L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323E07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101L07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101N19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-252O03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-293F21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137I05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105E11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-199O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-087K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227A15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042A07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252L03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145D02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-171O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212E12
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-139D11.b	B6Ng01-139D11.g
ACC	DH938258	DH938259
length	1,076	700
definition	DH938258\|Mus musculus domesticus DNA, BAC clone: B6Ng01-139D11, 5' end.	DH938259\|Mus musculus domesticus DNA, BAC clone: B6Ng01-139D11, 3' end.
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	gaattcatttttccattgtgtcatataaagaaaagcacagaggagtttta gaaaagaaactgacttaatataaaattaatactgggtcaaagaaatactg ttgcatgtacagaattttgtatacatatcacttagctttgaatacatgga atgtagaaaagtttacatcatttttttcctctaaaaatcccttcaatgca gttatgaagatgcctcagtaataaatagggtttactgtgaaaggaggacg ttcgcaagtttgattctagtacccatttagaaaactaaccatggatggtt gcttctacagtagcagcactgtggtaggcagagtgagaattgctaggact tgctggctgcttatctagctacatgttcagtgaaagagcaggtcttacgg gaataaggtggaaagaaatagagcaaaacccaacatcctcctctgccctc cacatgtgtatatatgcaacacagacacaaatatacgaaaaaattaaaat taagtttaattaatgtcacacctgttgaaaaagcaccattttcacttctg taccacaggcaaaaataagtccatgatgctaaatcaaaaatatttgcaag cgtccgtgtcatgagtagaacttgggtgctgacctagtcccacaataccc agagtaagctcaaatcccaggtgctctaacacccccaggatcacaggaat ggccccaacatcagaataactgagtccctaaggatccagggacacaggaa ctccttcctttccagtggcatggattccttctggtctgaaactgcacctg gataagacctggggtactggctctgcacccactcttaaaacacccagagg gagcacgattcccaggtattctgaaatcctcaagatcacaggatcacaga ggaagctcgactcccaggagatcagacacacccaggaacactggagtctg acagaagagcacagctgaggcacaacatcttcccaacaccttgtgtatct ggaccccacaaaaccagggaaacaaatcattcctccgcagagcacaggtc ttgcagatgcactgtgttctagagaa	gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc agatgctggcgtggatgtggagaaagaggaacactcctccattgttggta ggattgaaggcttgtacaaccactctggaaatcagtctggtggttcctca gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc atatatccagaagatgccccaactggtaagaaggacacatgctccactat gttcatagcagccttatttataatagccagaagctggaatgaacccaaat gcccctcaagaggattggatacagaaaatgtgatacatctacacaatgga gtactactcagctattaaaaagaatgaatttatgaaatgcctagccaaat ggatggacctggagggcatcatcttgagtgaggtaacacattcacaaagg aactcacacaatatgtactcactgataagtggatagtagcccctaaccta ggatacccaagatataagatacaattttgctaaacacatgaaactcaaga agaatgtatgactgaagtgtggacactaagccccctccttagaaagtggg
quality values	Open. Hide. 53 39 27 33 61 33 30 42 61 61 61 61 61 27 12 61 61 47 47 47 61 47 32 61 61 15 17 12 9 8 10 10 10 8 8 28 28 35 37 41 55 55 55 55 59 59 59 61 61 59 61 61 61 61 61 61 61 61 61 61 61 59 55 61 61 61 61 23 23 19 22 13 18 23 23 31 39 36 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 59 59 55 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 59 59 55 35 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 59 61 61 61 61 61 61 61 61 61 59 59 59 61 59 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 55 55 52 52 61 61 61 61 61 55 61 52 55 55 52 61 55 61 61 61 61 61 55 61 61 61 61 61 55 55 52 55 52 61 55 55 55 55 61 61 61 61 61 61 61 61 61 61 61 61 55 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 53 50 61 61 61 61 50 61 61 61 53 61 53 61 50 61 61 61 61 61 52 61 61 61 61 61 61 61 61 61 61 61 61 61 47 61 61 61 61 61 61 61 61 61 61 47 53 50 46 50 53 61 61 61 61 61 61 61 61 61 61 61 61 53 61 52 61 61 61 61 61 50 61 61 61 61 61 61 61 53 61 52 39 53 53 53 57 53 57 57 57 57 57 57 53 57 53 53 53 53 53 53 57 57 57 57 57 57 52 57 57 53 53 53 53 57 57 53 53 57 53 57 53 42 50 53 53 53 57 57 53 53 57 57 53 57 57 53 45 53 57 53 40 53 53 53 57 57 34 53 47 47 47 57 45 53 53 53 53 37 36 53 53 53 50 52 50 52 53 47 50 45 53 45 50 43 47 38 38 42 57 45 45 45 53 45 45 53 38 23 53 53 53 42 46 46 31 43 46 36 57 46 36 52 33 20 50 52 38 47 43 38 38 46 33 30 53 40 34 40 40 50 47 52 53 47 53 38 52 52 19 47 47 47 24 38 39 36 42 52 7 7 21 34 32 40 53 33 53 53 53 32 40 30 39 34 35 40 34 11 30 18 28 24 33 23 40 53 41 25 24 30 45 30 23 53 43 31 31 33 33 40 41 37 28 39 40 57 48 26 40 20 31 24 53 29 27 24 29 44 53 21 15 53 32 48 31 41 33 25 37 46 24 31 31 29 29 46 31 23 23 31 20 29 30 37 23 20 30 36 22 13 46 35 39 21 31 30 30 47 47 43 23 28 29 29 33 33 29 30 32 29 29 29 25 44 38 30 29 29 47 29 20 39 29 45 45 29 26 22 25 26 26 28 20 29 13 51 30 27 15 28 22 27 24 41 22 23 33 38 29 27 27 21 10 17 18 29 29 21 22 29 51 33 31 33 35 29 20 28 22 17 23 15 31 25 29 29 32 19 35 26 20 17 29 20 18 28 24 18 24 29 10 13 23 27 28 33 33 34 16 29 16 8 8 29 40 16 31 23 16 9 8 29 14 19 17 16 31 29 36 20 14 18 38 30 19 19 23 24 16 25 20 11 38 16 28 25 12 9 7 6 36 22 8 21 8 12 17 31 16 19 11 24 31 14 7 16 9 13 22 15 30 16 11 32 18 13 31 7 35 16 15 10 11 15 15 23 9 6 4 5 7 9 14 34 23 12 24 23 4 10 32 30 25 10 15 16 35 38 26 5 13 21 17 30 10 17 31 5 4 16 31 26 20 17 20 17 8 7 12 13 10 7 6 3 3 5 14 23 6 12 5 5 17 11 29 10 4 15 22 9 6 9 5 7 13 8 23 5 4 4 5 11 11 8 17 20 15 6 9 8 10 13	Open. Hide. 61 47 47 47 18 15 14 23 20 14 10 13 9 22 23 55 55 41 37 52 55 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 59 43 61 61 61 61 61 59 61 61 61 14 13 16 12 13 12 12 11 10 11 22 28 28 44 59 59 59 59 59 59 59 59 59 49 61 55 59 59 52 59 59 45 43 59 59 59 52 49 43 59 52 59 52 52 59 59 59 59 59 59 59 59 59 59 59 59 52 59 59 59 59 59 59 59 59 55 44 50 59 45 43 39 59 52 59 59 61 59 59 59 59 45 61 61 59 52 59 59 59 59 59 59 52 43 39 61 59 59 59 61 59 59 59 59 49 61 59 59 59 59 59 59 44 44 59 61 59 61 61 61 61 59 59 59 59 59 59 59 59 61 52 59 59 59 49 45 52 45 52 52 59 52 59 52 59 59 61 59 59 59 59 52 52 52 59 59 59 59 59 59 44 49 61 52 59 59 61 52 52 59 52 59 52 59 52 59 59 52 52 59 52 59 59 59 61 61 59 59 49 59 59 59 59 49 61 59 52 59 52 52 41 44 37 18 52 43 43 52 43 43 52 37 59 52 59 59 59 39 43 52 59 52 36 52 43 38 36 44 31 41 59 43 45 49 36 39 41 36 41 49 41 45 59 59 59 52 52 59 59 59 59 59 59 59 59 59 52 38 49 45 38 25 22 35 44 14 61 59 59 52 59 59 52 38 39 52 59 59 59 52 59 59 49 61 59 45 59 59 41 49 59 49 59 59 59 59 59 59 49 43 41 43 49 59 49 44 49 45 52 52 43 36 36 27 36 44 45 45 45 43 49 43 38 52 45 52 43 43 27 41 49 38 31 59 49 13 20 12 18 22 18 20 22 24 27 27 27 26 28 15 24 39 52 59 52 52 59 59 59 52 37 27 30 52 33 36 38 25 15 32 31 59 59 59 59 52 43 59 59 38 38 37 33 28 30 29 23 24 27 24 30 35 30 27 41 23 43 36 40 40 52 37 52 43 37 41 41 19 18 25 13 27 13 27 36 36 52 52 52 43 43 43 49 49 43 59 52 49 52 59 59 28 27 24 11 21 15 20 18 43 43 37 32 30 27 24 18 27 19 9 6 17 11 30 40 41 28 31 35 19 19 25 34 23 23 23 27 23 30 13 15 15 23 26 18 14 11 8 14 41 28 28 39 32 19 30 10 28 19 30 21 28 28 32 41 37 43 52 21 34 41 26 41 49 36 39 49 42 29 39 37 37 37 52 52 29 49 37 28 24 28 25 29 18 25 36 41 35 37 31 26 15 14 25 21 32 24 32 22 11 27 29 32 32 49 26 12 19 26 12 19 10 10 15 17 49 27 24 29 22 21 14 19 17 37 22 19 13 7 11 9 28 11 19 21 14 28 23 49 43 10 21 13 20 21 27 13 31 11 14 9 15 23 19 28 31 19 29 19 10 14 19 43 37 31 47 12 19 18 12 20 13 12 49 22 27 25 12 8 8 20 23 22 28 13 25 14 12 19 12 9 6 14 10 10 12 14 13 8 15 17 10 25 27 10 19 23 18 8 22 25 47 26

Alignment Information

BAC End 1

BAC End 2

seq1: chrX_25256097_25257186
seq2: B6Ng01-139D11.b_47_1122

seq1  GAATTCATTTTTCCATTGTGTCATATAAAGAAAAGCACAGAGGAGTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTCCATTGTGTCATATAAAGAAAAGCACAGAGGAGTTTTA  50

seq1  GAAAAGAAACTGACTTAATATAAAATTAATACTGGGTCAAAGAAATACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAACTGACTTAATATAAAATTAATACTGGGTCAAAGAAATACTG  100

seq1  TTGCATGTACAGAATTTTGTATACATATCACTTAGCTTTGAATACATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGTACAGAATTTTGTATACATATCACTTAGCTTTGAATACATGGA  150

seq1  ATGTAGAAAAGTTTACATCATTTTTTTCCTCTAAAAATCCCTTCAATGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAAAAGTTTACATCATTTTTTTCCTCTAAAAATCCCTTCAATGCA  200

seq1  GTTATGAAGATGCCTCAGTAATAAATAGGGTTTACTGTGAAAGGAGGACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGAAGATGCCTCAGTAATAAATAGGGTTTACTGTGAAAGGAGGACG  250

seq1  TTCGCAAGTTTGATTCTAGTACCCATTTAGAAAACTAACCATGGATGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCAAGTTTGATTCTAGTACCCATTTAGAAAACTAACCATGGATGGTT  300

seq1  GCTTCTACAGTAGCAGCACTGTGGTAGGCAGAGTGAGAATTGCTAGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTACAGTAGCAGCACTGTGGTAGGCAGAGTGAGAATTGCTAGGACT  350

seq1  TGCTGGCTGCTTATCTAGCTACATGTTCAGTGAAAGAGCAGGTCTTACGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCTGCTTATCTAGCTACATGTTCAGTGAAAGAGCAGGTCTTACGG  400

seq1  GAATAAGGTGGAAAGAAATAGAGCAAAACCCAACATCCTCCTCTGCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGGTGGAAAGAAATAGAGCAAAACCCAACATCCTCCTCTGCCCTC  450

seq1  CACATGTGTATATATGCAACACAGACACAAATATACGAAAAAATTAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTGTATATATGCAACACAGACACAAATATACGAAAAAATTAAAAT  500

seq1  TAAGTTTAATTAATGTCACACCTGTTGAAAAAGCACCATTTTCACTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTAATTAATGTCACACCTGTTGAAAAAGCACCATTTTCACTTCTG  550

seq1  TACCACAGGCAAAAATAAGTCCATGATGCTAAATCAAAAATATTTGCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAGGCAAAAATAAGTCCATGATGCTAAATCAAAAATATTTGCAAG  600

seq1  CGTCCGTGTCATGAGTAGAACTTGGGTGCTGACCTAGTCCCACAATACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCGTGTCATGAGTAGAACTTGGGTGCTGACCTAGTCCCACAATACCC  650

seq1  AGAGTAAGCTCAAATCCCAGGTGCTCTAACACCCCCAGGATCACAGGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAGCTCAAATCCCAGGTGCTCTAACACCCCCAGGATCACAGGAAT  700

seq1  GGCCCCAACATCAGGAATAACTGAGTCCCTAAGGATCCAGGGACACAGGA  750
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGCCCCAACATCA-GAATAACTGAGTCCCTAAGGATCCAGGGACACAGGA  749

seq1  ACTCCTTCCTTTCCAGTGGCATGGATTCCTTCTGGTCTGAAACTGCACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTCCTTTCCAGTGGCATGGATTCCTTCTGGTCTGAAACTGCACCT  799

seq1  GGATAAGACCTGGGGTACTGGCTCTGCACCCACTCTTAAAACACCCAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAGACCTGGGGTACTGGCTCTGCACCCACTCTTAAAACACCCAGAG  849

seq1  GGAGCACGATTCCCAGGTATTCTGAAATCCTCAAGATCACAGGATCACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCACGATTCCCAGGTATTCTGAAATCCTCAAGATCACAGGATCACAG  899

seq1  AGGAAGCTCGACTCCCAGGAGATCAGACACACCCAGGAACACTGGAGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGGAAGCTCGACTCCCAGGAGATCAGACACACCCAGGAACACTGGAG-TC  948

seq1  TGACAGAAGAGCACAGCTGAGGGCACAACATCTTTCCCAACACCCTGTGT  1000
      |||||||||||||||||||| ||||||||||| ||||||||||| |||||
seq2  TGACAGAAGAGCACAGCTGA-GGCACAACATC-TTCCCAACACCTTGTGT  996

seq1  ATCTGGGACCCCCACAAAAACCAGGGAAACAAAATCATCCTCCCGGCCAG  1050
      ||||||   |||||| |||||||||||||| ||||||| |  |||  |||
seq2  ATCTGG--ACCCCAC-AAAACCAGGGAAAC-AAATCATTCCTCCG--CAG  1040

seq1  AGGCACAGGTTCCTTGCAGTATGCAACTGTG-TCTAGAGAA  1090
      | ||||||||  ||||||| |||| |||||| |||||||||
seq2  A-GCACAGGT--CTTGCAG-ATGC-ACTGTGTTCTAGAGAA  1076

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information