BAC Information

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BAC

Clone NameB6Ng01-139G03
ChromosomeX (Build37)
Map Location 64,814,931 - 64,952,961
singlet/doubletdoublet
Overlap geneGm1140, LOC666842
Upstream geneSlitrk2, LOC666824, LOC627734, EG666828
Downstream geneLOC619873, 4933436I01Rik, LOC100040194, EG236844, LOC385372, LOC627888, LOC434788, Fmr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139G03.bB6Ng01-139G03.g
ACCDH938382DH938383
length1,1671,059
definitionDH938382|Mus musculus domesticus DNA, BAC clone: B6Ng01-139G03, 5' end.DH938383|Mus musculus domesticus DNA, BAC clone: B6Ng01-139G03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,951,789 - 64,952,961)(64,814,931 - 64,816,007)
sequence
gaattcctacagcacaggaatatacatacggatatgttcctgttgtctag
catacaatgaatattaaatgttgcacatttcaacatgtacacagatgaag
tttccatatgcagccctttcttctccttgaccttgtctctagaggtaatc
ttggcataacccctgctggccctctaaagtcatcccctagacatcttcat
ccacaatatccagacagatatcttttatctattaagtatgaaaaagatgg
aaggcagatgacaaccagttattggttgctgttttaggacatttcagtca
atgtattcacgcagaacttgtttaatattaaccaactctcataatacatt
ggttccaacgctaggcctgatactcacaataaaactgtcttcttcttgcc
caactttttccacactcatgtcccactgttgaaacaaagactggaggctc
ttagaatagttggaatggaacatagtcctgtaaaatataataatgagcat
ggtcttatactatgagggtaagacagattatgcactctcaaataaaaatt
atttggcaattcatacaaccaagagaggcaagaaaaatagttgaaataac
ctaatgagagacagaaaagtgaagtcatgtggccccattataaaactatg
tactcctaagttacaataagagaggatatgtcacatgtattccctcttga
tcagtaaggattcactgctatattaattttccataattatttatttgacc
tctacctacaaccgtatgtttttctcttgctagataacatagattctgat
agagcaagtggatgtattgcaggtaacatatgcctttcctccacaaggac
tgccataagagactcttcagtgaatttgtcttctccaggctcacagtgac
tttcccaaaagaatggcaatagcaattggacactcattccaattatttgt
atactgtcactaaaatttaagactcatatttacgatatataagagtgtct
aattaggctgcctttgtctgctgtctgtgcagatgctttgcgcctgacag
gacatgatgcagccagcaattacttaaaatgagcatcatgaccttacagt
gatagagttatgtggttttctaaatgcagaagcctgactatagtcgctgg
tattctccacattgaat
gaattcaaaacccatgcccatcacaaataattagatatacaacattccat
ctcttcaaaaagaaaccccatatattttgtagtcactccctagtccctat
tcctttagcctttcaaaacaacttatctaccttcaatctctacatgtttt
ccaattgtggatagtatgtataaatagaataataaaacatgaattagttt
tgtactgtttctttccttttgcacactgtttccaaagtttccctgtgctg
taatattcatcattacttgttttcttactgaataatactcatttcttata
ttcactgaatcgtattaatgttttccttacttatactaggttgaattaat
cattctttaagaatcttgaaagacaatttccaacaacactcatttataag
tatttatttttcagcatgttctcatgtatgtgaggtacataggaatataa
ttcatgaatcatatgataattctctgtttaatatttgagggaactgcagt
acagccatttgaagtagctatacaaaatattgcattattatcaaaaaaat
aagaagggtccagtttcactacatcctcactaacacatgctatattacat
cattttaatatctctcaatatcaatggactcaatttgcaaataaatagag
gtaatatgataatatgtgtattgaaaacattgccactttaatataggtaa
tgctcattattataaaataaataatatatttgaaaaataaaaataaaaaa
agacataagctaacagactggaaacacaatgaggatccagaattttgctg
catacaagaaacacacctcaatgacaaagacagacactacctcaggaaaa
aggctgggaaaaagtctttcaagcaaataggcccaagaaacaagtgggag
ttgccatcctaatatccataaaatagacttttacccaaagtttcagcatg
atgaggaggacacttcatattcatcaagggaaatcccagagaagtctcaa
ttctgacatcttacccaaatgcagagccacaattcatcaaagaacttact
aagctcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_64951789_64952961
seq2: B6Ng01-139G03.b_44_1210 (reverse)

seq1  ATTCAATGT--AGAATA-CAGCGACTATAGTCA-GCTTCTTGCATTTTAG  46
      |||||||||  |||||| ||||||||||||||| ||||| |||| |||||
seq2  ATTCAATGTGGAGAATACCAGCGACTATAGTCAGGCTTC-TGCA-TTTAG  48

seq1  AAAACAACATAACTCTATCACTGTAAAGGTCATTGATGCTCATATTTAGT  96
      ||||| |||||||||||||||||| ||||||| |||||||||| || |||
seq2  AAAACCACATAACTCTATCACTGT-AAGGTCA-TGATGCTCATTTTAAGT  96

seq1  AATTGGCTGGCTGCATCCATGTCCTGTCAGCGCCAAAGCATTCTGCACAG  146
      |||| ||||||||||| |||||||||||||   ||||||| |||||||| 
seq2  AATT-GCTGGCTGCAT-CATGTCCTGTCAGGCGCAAAGCA-TCTGCACA-  142

seq1  GACAGCAGACAAAGGCAGCCTATGTAGACACTCTTAATATATCGTAAATA  196
      ||||||||||||||||||||||  ||||||||||| ||||||||||||||
seq2  GACAGCAGACAAAGGCAGCCTAATTAGACACTCTT-ATATATCGTAAATA  191

seq1  TGAGTCTTAAATTTTAGTGACAGTATTACAAATAATTGGAATGAGTGTCC  246
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGAGTCTTAAATTTTAGTGACAGTA-TACAAATAATTGGAATGAGTGTCC  240

seq1  AATTGCTATTGCCATTCTTTTGGGAAAGTCACTGTGAGCCTGGGAGAAGA  296
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AATTGCTATTGCCATTCTTTTGGGAAAGTCACTGTGAGCCT-GGAGAAGA  289

seq1  CAAATTCACTGAAGAGTTCTCTTATGGCAGTCCTTGTGGAGG-AAGGCAT  345
      |||||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  CAAATTCACTGAAGAG-TCTCTTATGGCAGTCCTTGTGGAGGAAAGGCAT  338

seq1  ATGTTACCTGCAATACATCCACTTGCTCTATCAGAATCTATGTTATCTAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACCTGCAATACATCCACTTGCTCTATCAGAATCTATGTTATCTAG  388

seq1  CAAGAGAAAAACATACGGTTGTAGGTAGAGGTCAAATAAATAATTATGGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAAAAACATACGGTTGTAGGTAGAGGTCAAATAAATAATTATGGA  438

seq1  AAATTAATATAGCAGTGAATCCTTACTGATCAAGAGGGAATACATGTGAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATATAGCAGTGAATCCTTACTGATCAAGAGGGAATACATGTGAC  488

seq1  ATATCCTCTCTTATTGTAACTTAGGAGTACATAGTTTTATAATGGGGCCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTCTCTTATTGTAACTTAGGAGTACATAGTTTTATAATGGGGCCA  538

seq1  CATGACTTCACTTTTCTGTCTCTCATTAGGTTATTTCAACTATTTTTCTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTTCACTTTTCTGTCTCTCATTAGGTTATTTCAACTATTTTTCTT  588

seq1  GCCTCTCTTGGTTGTATGAATTGCCAAATAATTTTTATTTGAGAGTGCAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCTTGGTTGTATGAATTGCCAAATAATTTTTATTTGAGAGTGCAT  638

seq1  AATCTGTCTTACCCTCATAGTATAAGACCATGCTCATTATTATATTTTAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTCTTACCCTCATAGTATAAGACCATGCTCATTATTATATTTTAC  688

seq1  AGGACTATGTTCCATTCCAACTATTCTAAGAGCCTCCAGTCTTTGTTTCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTATGTTCCATTCCAACTATTCTAAGAGCCTCCAGTCTTTGTTTCA  738

seq1  ACAGTGGGACATGAGTGTGGAAAAAGTTGGGCAAGAAGAAGACAGTTTTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGGACATGAGTGTGGAAAAAGTTGGGCAAGAAGAAGACAGTTTTA  788

seq1  TTGTGAGTATCAGGCCTAGCGTTGGAACCAATGTATTATGAGAGTTGGTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGTATCAGGCCTAGCGTTGGAACCAATGTATTATGAGAGTTGGTT  838

seq1  AATATTAAACAAGTTCTGCGTGAATACATTGACTGAAATGTCCTAAAACA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAAACAAGTTCTGCGTGAATACATTGACTGAAATGTCCTAAAACA  888

seq1  GCAACCAATAACTGGTTGTCATCTGCCTTCCATCTTTTTCATACTTAATA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCAATAACTGGTTGTCATCTGCCTTCCATCTTTTTCATACTTAATA  938

seq1  GATAAAAGATATCTGTCTGGATATTGTGGATGAAGATGTCTAGGGGATGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAGATATCTGTCTGGATATTGTGGATGAAGATGTCTAGGGGATGA  988

seq1  CTTTAGAGGGCCAGCAGGGGTTATGCCAAGATTACCTCTAGAGACAAGGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAGGGCCAGCAGGGGTTATGCCAAGATTACCTCTAGAGACAAGGT  1038

seq1  CAAGGAGAAGAAAGGGCTGCATATGGAAACTTCATCTGTGTACATGTTGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGAAGAAAGGGCTGCATATGGAAACTTCATCTGTGTACATGTTGA  1088

seq1  AATGTGCAACATTTAATATTCATTGTATGCTAGACAACAGGAACATATCC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCAACATTTAATATTCATTGTATGCTAGACAACAGGAACATATCC  1138

seq1  -TATGTATATTCCTGTGCTGTAGGAATTC  1173
       ||||||||||||||||||||||||||||
seq2  GTATGTATATTCCTGTGCTGTAGGAATTC  1167

seq1: chrX_64814931_64816007
seq2: B6Ng01-139G03.g_68_1126

seq1  GAATTCAAAACCCATGCCCATCACAAATAATTAGATATACAACATTCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACCCATGCCCATCACAAATAATTAGATATACAACATTCCAT  50

seq1  CTCTTCAAAAAGAAACCCCATATATTTTGTAGTCACTCCCTAGTCCCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAAAAAGAAACCCCATATATTTTGTAGTCACTCCCTAGTCCCTAT  100

seq1  TCCTTTAGCCTTTCAAAACAACTTATCTACCTTCAATCTCTACATGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAGCCTTTCAAAACAACTTATCTACCTTCAATCTCTACATGTTTT  150

seq1  CCAATTGTGGATAGTATGTATAAATAGAATAATAAAACATGAATTAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTGTGGATAGTATGTATAAATAGAATAATAAAACATGAATTAGTTT  200

seq1  TGTACTGTTTCTTTCCTTTTGCACACTGTTTCCAAAGTTTCCCTGTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGTTTCTTTCCTTTTGCACACTGTTTCCAAAGTTTCCCTGTGCTG  250

seq1  TAATATTCATCATTACTTGTTTTCTTACTGAATAATACTCATTTCTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTCATCATTACTTGTTTTCTTACTGAATAATACTCATTTCTTATA  300

seq1  TTCACTGAATCGTATTAATGTTTTCCTTACTTATACTAGGTTGAATTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGAATCGTATTAATGTTTTCCTTACTTATACTAGGTTGAATTAAT  350

seq1  CATTCTTTAAGAATCTTGAAAGACAATTTCCAACAACACTCATTTATAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTAAGAATCTTGAAAGACAATTTCCAACAACACTCATTTATAAG  400

seq1  TATTTATTTTTCAGCATGTTCTCATGTATGTGAGGTACATAGGAATATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTTTCAGCATGTTCTCATGTATGTGAGGTACATAGGAATATAA  450

seq1  TTCATGAATCATATGATAATTCTCTGTTTAATATTTGAGGGAACTGCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAATCATATGATAATTCTCTGTTTAATATTTGAGGGAACTGCAGT  500

seq1  ACAGCCATTTGAAGTAGCTATACAAAATATTGCATTATTATCAAAAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCATTTGAAGTAGCTATACAAAATATTGCATTATTATCAAAAAAAT  550

seq1  AAGAAGGGTCCAGTTTCACTACATCCTCACTAACACATGCTATATTACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGGTCCAGTTTCACTACATCCTCACTAACACATGCTATATTACAT  600

seq1  CATTTTAATATCTCTCAATATCAATGGACTCAATTTGCAAATAAATAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAATATCTCTCAATATCAATGGACTCAATTTGCAAATAAATAGAG  650

seq1  GTAATATGATAATATGTGTATTGAAAACATTGCCACTTTAATATAGGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATGATAATATGTGTATTGAAAACATTGCCACTTTAATATAGGTAA  700

seq1  TGCTCATTATTATAAAATAAATAATATATTTGAAAAATAAAAATAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTATTATAAAATAAATAATATATTTGAAAAATAAAAATAAAAAA  750

seq1  AGACATAAGCTAACAGACTGGAAACACAATGAGGATCCAGAATTTTGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAAGCTAACAGACTGGAAACACAATGAGGATCCAGAATTTTGCTG  800

seq1  CATACAAGAAACACACCTCAATGACAAAGACAGACACTACCTCAGGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAAGAAACACACCTCAATGACAAAGACAGACACTACCTCAGGAAAA  850

seq1  AGGCTGGGAAAAAGTCTTTCAAGCAAATAGGCCCAAGAAACAAGTGGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGGAAAAAGTCTTTCAAGCAAATAGGCCCAAGAAACAAGTGGGAG  900

seq1  TTGCCATCCTAATATCCAATAAAATAGACTTTTAACCAAAAGTTTTCAAG  950
      ||||||||||||||||| ||||||||||||||| ||| |||||||   ||
seq2  TTGCCATCCTAATATCC-ATAAAATAGACTTTT-ACCCAAAGTTT--CAG  946

seq1  CATGATGAAGAAGGACACTTCATATTCATCAAGGGGAAAATCCCAAGAGA  1000
      ||||||| || ||||||||||||||||||||||||  ||||||| |||| 
seq2  CATGATG-AGGAGGACACTTCATATTCATCAAGGG--AAATCCC-AGAG-  991

seq1  AAGTCTCAATTCTGAACATCTATACCCCAAATGCAAGAGCACACAAATTC  1050
      |||||||||||||| |||||| || ||||||||| ||||| ||| |||||
seq2  AAGTCTCAATTCTG-ACATCT-TA-CCCAAATGC-AGAGC-CAC-AATTC  1035

seq1  ATCAAAGAAACTTTACTAAAGCTCAAA  1077
      |||||||||   ||||| |||||||||
seq2  ATCAAAGAA--CTTACT-AAGCTCAAA  1059