BAC Information

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BAC

Clone NameB6Ng01-141C02
ChromosomeX (Build37)
Map Location 129,769,436 - 129,852,747
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665846, LOC665850, LOC665854
Downstream geneLOC100040794, Pcdh19, LOC100040831, Tnmd, Tspan6, Srpx2, Sytl4, LOC665889, Cstf2, Nox1, Xkrx, Arl13a, 4732479N06Rik, LOC100040849, Tmem35, Cenpi
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141C02.bB6Ng01-141C02.g
ACCDH939669DH939670
length3671,088
definitionDH939669|Mus musculus domesticus DNA, BAC clone: B6Ng01-141C02, 5' end.DH939670|Mus musculus domesticus DNA, BAC clone: B6Ng01-141C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,852,378 - 129,852,747)(129,769,436 - 129,770,529)
sequence
gaattctttgagggaggatgaggggcaacatttgggatgtaaataaataa
ataaataaataaataaatatcatattttgtaggcttgagaaatggttcag
atctgagatcacctcctagcacccaaatggtggcctcaaacacctttaac
tagttccagcggatgtgccactttcttctagcctctgcaggcagcagaca
tgtgataaacagatctatgtatgtatgtatgtatttgtgtatatatgaag
ggaacacacacacgtgcacacacatacaatatattatatataaaacatat
ataatatatataatatatatatatatatatatatatatatatatatatat
atatatatatatatata
gaattcctgtgactttttaaccctaatctttcagtgccatctattttttt
ctagtacatttctaatctttttaagcaataactcatccctggatttgtcc
accagcctacaacttacttcattctctagattacagccactccctaacat
cctaactgtcagacttgaaatatttgaagctttcatatttataaaactgt
gcatttataaagcatgttatgaggacatcacagtcacagttaaattttgt
taggacttctaaatttttaagataaaatttgaaaatcctcaatataaaat
atacatgacaaaatattacatgcttttctacaattttatttgttgtgtat
atttaagcattatacaataaaattcagttgtctaagaattcttcaagtac
acccaggaaaagcctttttcacagaaaaaaatattaggcacacaccattg
gtatgtggtttcagttgttccaggaggactcaccactcctaaatatctta
ttctttaggtaattgtcactctcaaatgcattgtataggttgtcaactgt
ccatcactgtgacttattcgtcagatttcttactcaaaatggatccatta
tgtttaattaaaatataaggattattctttatgtatctgattgctatttt
ctataaaagcagcattaaatattgaatcaagaaagtgatggttttaattt
tatccattatttgataattacatatatgtattcaaagtgttttgatcata
tcaatcctactgtctctccaactctttcccagactcacctcccacatccc
ttttccaattgcatgccttcttttcataacccattaagtataatcagcat
tttccttatatgcatagaggtagggcaacccactaaagcatgggcatctt
acataggccagtttctgagaaaactgaatcttcccacctcagtagtctca
gtttacagtgatacttagctaccggtaggtctttgagctctcctcttctc
atctatgattgaataatacaaacccatttttatttatgtataacacccat
tataaagcttgattatatttatttcctccttaattctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_129852378_129852747
seq2: B6Ng01-141C02.b_48_414 (reverse)

seq1  TATATATATGTTATATATATATATATATATATATATATATATATATATAT  50
      ||||||||   |||||||||||||||||||||||||||||||||||||||
seq2  TATATATA---TATATATATATATATATATATATATATATATATATATAT  47

seq1  ATATATATTATATATATTATATATGTTTTATATATAATATATTGTATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATTATATATATTATATATGTTTTATATATAATATATTGTATGTG  97

seq1  TGTGCACGTGTGTGTGTTCCCTTCATATATACACAAATACATACATACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACGTGTGTGTGTTCCCTTCATATATACACAAATACATACATACAT  147

seq1  ACATAGATCTGTTTATCACATGTCTGCTGCCTGCAGAGGCTAGAAGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGATCTGTTTATCACATGTCTGCTGCCTGCAGAGGCTAGAAGAAAG  197

seq1  TGGCACATCCGCTGGAACTAGTTAAAGGTGTTTGAGGCCACCATTTGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACATCCGCTGGAACTAGTTAAAGGTGTTTGAGGCCACCATTTGGGT  247

seq1  GCTAGGAGGTGATCTCAGATCTGAACCATTTCTCAAGCCTACAAAATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGAGGTGATCTCAGATCTGAACCATTTCTCAAGCCTACAAAATATG  297

seq1  ATATTTATTTATTTATTTATTTATTTATTTACATCCCAAATGTTGCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATTTATTTATTTATTTATTTATTTACATCCCAAATGTTGCCCCT  347

seq1  CATCCTCCCTCAAAGAATTC  370
      ||||||||||||||||||||
seq2  CATCCTCCCTCAAAGAATTC  367

seq1: chrX_129769436_129770529
seq2: B6Ng01-141C02.g_65_1152

seq1  GAATTCCTGTGACTTTTTAACCCTAATCTTTCAGTGCCATCTATTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGACTTTTTAACCCTAATCTTTCAGTGCCATCTATTTTTTT  50

seq1  CTAGTACATTTCTAATCTTTTTAAGCAATAACTCATCCCTGGATTTGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTACATTTCTAATCTTTTTAAGCAATAACTCATCCCTGGATTTGTCC  100

seq1  ACCAGCCTACAACTTACTTCATTCTCTAGATTACAGCCACTCCCTAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCCTACAACTTACTTCATTCTCTAGATTACAGCCACTCCCTAACAT  150

seq1  CCTAACTGTCAGACTTGAAATATTTGAAGCTTTCATATTTATAAAACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTGTCAGACTTGAAATATTTGAAGCTTTCATATTTATAAAACTGT  200

seq1  GCATTTATAAAGCATGTTATGAGGACATCACAGTCACAGTTAAATTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTATAAAGCATGTTATGAGGACATCACAGTCACAGTTAAATTTTGT  250

seq1  TAGGACTTCTAAATTTTTAAGATAAAATTTGAAAATCCTCAATATAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACTTCTAAATTTTTAAGATAAAATTTGAAAATCCTCAATATAAAAT  300

seq1  ATACATGACAAAATATTACATGCTTTTCTACAATTTTATTTGTTGTGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGACAAAATATTACATGCTTTTCTACAATTTTATTTGTTGTGTAT  350

seq1  ATTTAAGCATTATACAATAAAATTCAGTTGTCTAAGAATTCTTCAAGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGCATTATACAATAAAATTCAGTTGTCTAAGAATTCTTCAAGTAC  400

seq1  ACCCAGGAAAAGCCTTTTTCACAGAAAAAAATATTAGGCACACACCATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGAAAAGCCTTTTTCACAGAAAAAAATATTAGGCACACACCATTG  450

seq1  GTATGTGGTTTCAGTTGTTCCAGGAGGACTCACCACTCCTAAATATCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGGTTTCAGTTGTTCCAGGAGGACTCACCACTCCTAAATATCTTA  500

seq1  TTCTTTAGGTAATTGTCACTCTCAAATGCATTGTATAGGTTGTCAACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAGGTAATTGTCACTCTCAAATGCATTGTATAGGTTGTCAACTGT  550

seq1  CCATCACTGTGACTTATTCGTCAGATTTCTTACTCAAAATGGATCCATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACTGTGACTTATTCGTCAGATTTCTTACTCAAAATGGATCCATTA  600

seq1  TGTTTAATTAAAATATAAGGATTATTCTTTATGTATCTGATTGCTATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATTAAAATATAAGGATTATTCTTTATGTATCTGATTGCTATTTT  650

seq1  CTATAAAAGCAGCATTAAATATTGAATCAAGAAAGTGATGGTTTTAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAAGCAGCATTAAATATTGAATCAAGAAAGTGATGGTTTTAATTT  700

seq1  TATCCATTATTTGATAATTACATATATGTATTCAAAGTGTTTTGATCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATTATTTGATAATTACATATATGTATTCAAAGTGTTTTGATCATA  750

seq1  TCAATCCTACTGTCTCTCCAACTCTTTCCCAGACTCACCTCCCACATCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCCTACTGTCTCTCCAACTCTTTCCCAGACTCACCTCCCACATCCC  800

seq1  TTTTCCAATTGCATGCCTTCTTTTCATAACCCATTAAGTATAATCAGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAATTGCATGCCTTCTTTTCATAACCCATTAAGTATAATCAGCAT  850

seq1  TTTCCTTATATGCATAGAGGTAGGGCAACCCACTAAAGCATGGGCATCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTATATGCATAGAGGTAGGGCAACCCACTAAAGCATGGGCATCTT  900

seq1  AACATAGGCCAAGTTTCTGAAGAAAACTGAATCTTCCCACCTCAGTAGTC  950
       ||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  -ACATAGGCC-AGTTTCTG-AGAAAACTGAATCTTCCCACCTCAGTAGTC  947

seq1  TTCAGTTTACAGTGATACTTAGCTACCGGTAGGTCTTTGAGCTCTCCTC-  999
       |||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  -TCAGTTTACAGTGATACTTAGCTACCGGTAGGTCTTTGAGCTCTCCTCT  996

seq1  TCTCATCTATGATTGAATAATTACAAAACCCATTTTTATTTATGTATAAC  1049
      |||||||||||||||||||| ||| |||||||||||||||||||||||||
seq2  TCTCATCTATGATTGAATAA-TAC-AAACCCATTTTTATTTATGTATAAC  1044

seq1  ACCAATTAATAAAGGTTTAATTATA-TTATTTCCTTCTTAATTCTG  1094
      ||| ||| ||||| | || |||||| ||||||||| ||||||||||
seq2  ACCCATT-ATAAA-GCTTGATTATATTTATTTCCTCCTTAATTCTG  1088