MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-141J24
Chromosome	X (Build37)
Map Location	63,274,592 - 63,275,600
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Ctag2, LOC671840
Downstream gene	Slitrk2, LOC666824, LOC627734
Link	Open Mouse BAC browser

Click to get alignment info.

name	Ctag2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70062 MGI:1917312
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 8 ESTs, 1 Protein

name	LOC671840 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:671840
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Slitrk2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245450 MGI:2679449
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666824 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666824
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	LOC627734 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:627734
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins pseudo : _no_value

name	Slitrk2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110350663 GeneID:245450 MGI:2679449
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SLIT and NTRK-like family, member 2 transcript_id : NM_198863.1

name	Slitrk2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110350664 CCDS:CCDS30169.1 GeneID:245450 MGI:2679449
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007409 - axonogenesis [Evidence IDA] codon_start : 1 exception : mismatches in translation note : slit and trk like gene 2 product : SLIT and NTRK-like family, member 2 protein_id : NP_942563.1

name	LOC671840 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:671840
definition	number : 1 pseudo : _no_value

name	LOC671840 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:671840
definition	number : 2 pseudo : _no_value

name	LOC671840 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:671840
definition	number : 3 pseudo : _no_value

name	LOC671840 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:671840
definition	number : 4 pseudo : _no_value

name	LOC666824 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666824
definition	number : 1 pseudo : _no_value

name	Ctag2 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149271664 GeneID:70062 MGI:1917312
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 8 ESTs, 1 Protein product : cancer/testis antigen 2 transcript_id : XR_035228.1

name	LOC627734 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271665 GeneID:627734
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins product : similar to checkpoint suppressor 1 pseudo : _no_value transcript_id : XR_031567.1

clone name	MSMg01-340F18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-124B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-151B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-113D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506G18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-059C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-450D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-173C21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-100G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-047C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-123O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303I09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-400D15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-494B07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-172O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-148P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-306K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-097A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-190B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-074H24
singlet/doublet	doublet
plural/unique	plural

clone name	B6Ng01-185P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-061F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-096D14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-199D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189E04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114F15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-122J06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-258A12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210D20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202K02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062H22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-274D16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256P03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-049F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140I20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-310G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162O19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-318N22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086G12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-300L07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292A06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-048G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257L14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-254F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258I11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-053D14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-087O05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159K05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306B04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331N10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-315A10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074B16
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-141J24.b	B6Ng01-141J24.g
ACC	DH940034	DH940035
length	1,000	1,159
definition	DH940034\|Mus musculus domesticus DNA, BAC clone: B6Ng01-141J24, 5' end.	DH940035\|Mus musculus domesticus DNA, BAC clone: B6Ng01-141J24, 3' end.
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	gaattcaagcccatctcctctaaactgaacacctctcattattgctgaac cattgaaagaagcaaagtatagaagacagaataaaatggtcatggtattt attctcaaagaggtgatagcaaaagcttggagactccaattccattcatt cagaggggttcactatctggatgggtaatgggggcatagactgaaaaagt ataatatgtaacaaaccatttattttgttgtacttttggttcacatgata gtttcagatataccagctcacaaagaaatcttactaaaagaatttaaacc agcatcatttgtaatagcaaaatactgggattattttagaggccctcatg taagggaaattaaatatatcaaagcatatccactcacttaaatactatgg agttatcaaaactgatagcttagaaaaacacaagacttttgagcttgtga aatgtcttggtgggtaaaggtgcttgctgctaacccagagcacttgagtt taatatctgggtctctctcacatggtgaaaacagacaactgactctgcca agttgtcctctgacctccacacaaacaccaagacatatacatgcacacaa acacacaatcaatcaatcaaaaatataaaattaaaatactgggcttaata acacagtctgcttagcatgtattaggccctatgctcaattctcaacacat ttaactaaattaaaataaaatatcatattttataaaatggtttatcatat ttgataatggaagcaaattataagagaaattttacacatataaatatata caaactataaatacgtacatacatacgtacatacagtagattgacagaac tgaattacactgattcaaaagtactcagttgttatataaaaattgtatca tcaagttattaaacaactagtaccttggttagacttgatgggaatagtat aatttagaaatcagcaaatatatatatatatatatatatatatgtatata	gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg ttccacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg ggattgcaggcttggacaaccactctggaaatcagtctggcggttcctca gaaaattggacatagtactaccggagtatccagcaatacctctcctgggc atatatccagaagatgccccacctggtaagaaggacacatgctccactat gttcatagaagccttatttataatagccagaagctggaaaaaacccagat gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg gtgtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa ggaactcacacaatatgtactcactgataagtggatattagccccaaacc taggatacccaagatataagatacaatttgctaaacacatgaaactcaag aagaatgaaaactgaagtgtggtcactatgcccctccttagaattgggaa caaaacacccatggaaaggagttacaaagacaaagtttgaagctgagatg aaaggatggaccatctaaagactgcaatatccagggatccaccccataat cagcatccaaacgctgacaccattgcatatatataccagcaagattttat cgaaaggacccagatgtagctgtctcttgtgagactaatgccggggccta gcaaacacagaagtggatgctcacagtcagctaatggatgatcacaggct cccaatggagagctagagatgtacccgagagtaagggatctgtaaccttt taggtggacacatatgactacagtacctcgagctcttgactctagctgat agtacaaaagaggcctagtcggccatcactggaagagagcccattggact ggcactaatgctccagatcagggaatgccaagtcaaaatgagaatggtgg ctagcgaga
quality values	Open. 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Alignment Information

BAC End 1

BAC End 2

seq1: chrX_63274592_63275600
seq2: B6Ng01-141J24.b_48_1047 (reverse)

seq1  TATATACATATATACATATATATATATATATATATATATATTTTGCTGAT  50
              |||||||||||||||||||||||||||||||| |||||||||
seq2  --------TATATACATATATATATATATATATATATATA-TTTGCTGAT  41

seq1  TTCTAAATTATACTTATTCCCATCAAGTCTAACCAAGGTACTAGTTGTTT  100
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTCTAAATTATAC-TATTCCCATCAAGTCTAACCAAGGTACTAGTTGTTT  90

seq1  AATAACTTGATGATACAATTTTTATATAACAACTG-GTACTTTTGAATCA  149
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AATAACTTGATGATACAATTTTTATATAACAACTGAGTACTTTTGAATCA  140

seq1  GTGTAATTCAGTTCTGTCAATCTACTGTATGTACGTATGTATGTACGTAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATTCAGTTCTGTCAATCTACTGTATGTACGTATGTATGTACGTAT  190

seq1  TTATAGTTTGTATATATTTATATGTGTAAAATTTCTCTTATAATTTGCTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTTTGTATATATTTATATGTGTAAAATTTCTCTTATAATTTGCTT  240

seq1  CCATTATCAAATATGATAAACCATTTTATAAAATATGATATTTTATTTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATCAAATATGATAAACCATTTTATAAAATATGATATTTTATTTTA  290

seq1  ATTTAGTTAAATGTGTTGAGAATTGAGCATAGGGCCTAATACATGCTAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTTAAATGTGTTGAGAATTGAGCATAGGGCCTAATACATGCTAAG  340

seq1  CAGACTGTGTTATTAAGCCCAGTATTTTAATTTTATATTTTTGATTGATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGTGTTATTAAGCCCAGTATTTTAATTTTATATTTTTGATTGATT  390

seq1  GATTGTGTGTTTGTGTGCATGTATATGTCTTGGTGTTTGTGTGGAGGTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGTGTTTGTGTGCATGTATATGTCTTGGTGTTTGTGTGGAGGTCA  440

seq1  GAGGACAACTTGGCAGAGTCAGTTGTCTGTTTTCACCATGTGAGAGAGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAACTTGGCAGAGTCAGTTGTCTGTTTTCACCATGTGAGAGAGAC  490

seq1  CCAGATATTAAACTCAAGTGCTCTGGGTTAGCAGCAAGCACCTTTACCCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATATTAAACTCAAGTGCTCTGGGTTAGCAGCAAGCACCTTTACCCA  540

seq1  CCAAGACATTTCACAAGCTCAAAAGTCTTGTGTTTTTCTAAGCTATCAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACATTTCACAAGCTCAAAAGTCTTGTGTTTTTCTAAGCTATCAGT  590

seq1  TTTGATAACTCCATAGTATTTAAGTGAGTGGATATGCTTTGATATATTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAACTCCATAGTATTTAAGTGAGTGGATATGCTTTGATATATTTA  640

seq1  ATTTCCCTTACATGAGGGCCTCTAAAATAATCCCAGTATTTTGCTATTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCTTACATGAGGGCCTCTAAAATAATCCCAGTATTTTGCTATTAC  690

seq1  AAATGATGCTGGTTTAAATTCTTTTAGTAAGATTTCTTTGTGAGCTGGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATGCTGGTTTAAATTCTTTTAGTAAGATTTCTTTGTGAGCTGGTA  740

seq1  TATCTGAAACTATCATGTGAACCAAAAGTACAACAAAATAAATGGTTTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAAACTATCATGTGAACCAAAAGTACAACAAAATAAATGGTTTGT  790

seq1  TACATATTATACTTTTTCAGTCTATGCCCCCATTACCCATCCAGATAGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTATACTTTTTCAGTCTATGCCCCCATTACCCATCCAGATAGTG  840

seq1  AACCCCTCTGAATGAATGGAATTGGAGTCTCCAAGCTTTTGCTATCACCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTCTGAATGAATGGAATTGGAGTCTCCAAGCTTTTGCTATCACCT  890

seq1  CTTTGAGAATAAATACCATGACCATTTTATTCTGTCTTCTATACTTTGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGAATAAATACCATGACCATTTTATTCTGTCTTCTATACTTTGCT  940

seq1  TCTTTCAATGGTTCAGCAATAATGAGAGGTGTTCAGTTTAGAGGAGATGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAATGGTTCAGCAATAATGAGAGGTGTTCAGTTTAGAGGAGATGG  990

seq1  GCTTGAATTC  1009
      ||||||||||
seq2  GCTTGAATTC  1000

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information