BAC Information

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BAC

Clone NameB6Ng01-143N10
ChromosomeX (Build37)2 (Build37)
Map Location 109,670,771 - 109,671,86615,678,758 - 15,679,216
singlet/doubletsingletsinglet
Overlap gene2010106E10Rik
Upstream geneEG664791, D030011N01Rik, LOC100038989, Tex16, LOC622570, 4933403O08Rik, EG385407, Apool, Satl1, EG623341
Downstream geneZfp711, Pof1b, LOC623412, EG623428, LOC100039112, Chm, EG664918, Dach2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143N10.bB6Ng01-143N10.g
ACCDH941671DH941672
length1,091889
definitionDH941671|Mus musculus domesticus DNA, BAC clone: B6Ng01-143N10, 5' end.DH941672|Mus musculus domesticus DNA, BAC clone: B6Ng01-143N10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,670,771 - 109,671,866)(15,678,758 - 15,679,216)
sequence
gaattccatgaataaatacccaggtattgtgccaaattttggagataaca
aatatctgcatctggtgaattaatggaattgaatagaagaaatgaaagtt
ttgcattatggtcatcaggaggggccaacaaagaaaaaaaaaactcaaga
cataaagaaaacaattatcataattataagaaaaacaaagtatgtagagc
atggaaatcatatttgtagtgtttccttggtatataacaagattggtgta
tgtagatttacacacagttatttttttccatgggtatattaatagttggg
tatcatgtttgcacgaccaattttgtaagtgatttctgactcttcataaa
ccgagtatttcttttcttttggaggatatgctgctcgtgggaccccggat
gtggaaaaatcctgcaaggaagttgaaaacgtcaaagtaattacatggca
tttgataaaatgtttaagcttgcttagatagggtattgaattagaaaatt
aagcatatgttatgttatttaattaaaatgtttaattatcataataagtc
cataattatttaaatcaataaagtatttctttcagtaaatgaattttagt
tgcttttaaatagccataaaatacctgtactattatccgtctaaactggt
tttgatactgtgcaactcataatctattcactaaaagaagcaagcattgc
tctgaataatatgtatttaggaaaaataagtagttttggaatactatcaa
agtttattttgttactgtacaagatgaatgttaatacatctctgaataag
tctccttgcatttaatctgttttcattgatttcaaatctttttctaataa
ttgccaatttaaatattttatgtataaattatagtacacacacgaataca
aaacatgttacatgtacgtacatattcattatacctattctatatcacat
attctatatctttgatctcatttctaagcccattatacaaacagaaatag
tagaatatagcaatttaattaaactttagcctttgtttgtactgatttat
taaataattttagcatatgaattcttttattcacaatgtta
gaattctgtttaactctttattccattttcaattgggttactttttgttt
tgttttttgagtctaaattctttgacattctgagttttcctctatatatt
ttggatattagccctctatcagatcttgggttagtgaagatcttttccca
atctgtggattgaggttttgtcctatggacagtatcctttgccttacaga
agcttttcaattttatgagctctgaattgtcaatagttgatcttatatcc
tgagccattagagtactttctgttcaggaaattttcccctgtgcccacgt
gtttgaggctctttcccacttcctcttctattagtttcagtgcatctagt
tttatgttgaggtccttgatccacttagacttgagctttgtataagatgt
gctcttcttgccccgacctgcagggataatcagcaggaacccagggcaaa
gtagtgagagagtgggagggaaagagccaggaagaatgagagcaagtcaa
tcatactgatcaagctctgaaaactttattcaggagtggaaatataagca
taagcaagaggaggctccaagggaggggggaagagcccaggggctctctg
aaggtcaggtggcaacttcagctcctggaaccaacggtcacagtgtcctc
tttttcccataaacatttcttactgttatgaccacgaatgttctctcagg
actgtttatgtaagctagaaaatatccacaaggcatggcctgagttatgg
ctcctggcatctcttccttattaatcattttcactaaagccccatggaat
ggggttgatcaatagtcatctcatcctaggatgagtgggtgtaaccagtc
aggtggggggaagcattgacctgatcctccgtagggtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_109670771_109671866
seq2: B6Ng01-143N10.b_48_1138 (reverse)

seq1  TAACATAGTGAATAATAGAATTCATTATGCTAAAATTATATAATAAAATC  50
      |||||| |||||||| |||||||| |||||||||||||| |||| |||||
seq2  TAACATTGTGAATAAAAGAATTCA-TATGCTAAAATTATTTAAT-AAATC  48

seq1  AGTACAAACAAAGGCTTAAAGTTTATATAAATTGCTATA-TCTACTATTT  99
      ||||||||||||||| |||||||||  |||||||||||| ||||||||||
seq2  AGTACAAACAAAGGC-TAAAGTTTAATTAAATTGCTATATTCTACTATTT  97

seq1  CTGTTTGTATAATGGGCTTAGGAAATGAGAATCAAAGATATAGAATATGT  149
      |||||||||||||||||||| |||||||| ||||||||||||||||||||
seq2  CTGTTTGTATAATGGGCTTA-GAAATGAG-ATCAAAGATATAGAATATGT  145

seq1  GATATAGAATAGGTATTAATGAATATGTACGTACATGTAACATGTTTTGT  199
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GATATAGAATAGGTA-TAATGAATATGTACGTACATGTAACATGTTTTGT  194

seq1  ATTCGTGTGTGTACTATAATTTATACATAAAATATTTAAATTGGCAATTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTGTGTGTACTATAATTTATACATAAAATATTTAAATTGGCAATTA  244

seq1  TTAGAAAAAGATTTGAAATCAATGAAAACAGATTAAATGCAAGGAGACTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAAAGATTTGAAATCAATGAAAACAGATTAAATGCAAGGAGACTT  294

seq1  ATTCAGAGATGTATTAACATTCATCTTGTACAGTAACAAAATAAACTTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAGATGTATTAACATTCATCTTGTACAGTAACAAAATAAACTTTG  344

seq1  ATAGTATTCCAAAACTACTTATTTTTCCTAAATACATATTATTCAGAGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATTCCAAAACTACTTATTTTTCCTAAATACATATTATTCAGAGCA  394

seq1  ATGCTTGCTTCTTTTAGTGAATAGATTATGAGTTGCACAGTATCAAAACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGCTTCTTTTAGTGAATAGATTATGAGTTGCACAGTATCAAAACC  444

seq1  AGTTTAGACGGATAATAGTACAGGTATTTTATGGCTATTTAAAAGCAACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGACGGATAATAGTACAGGTATTTTATGGCTATTTAAAAGCAACT  494

seq1  AAAATTCATTTACTGAAAGAAATACTTTATTGATTTAAATAATTATGGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCATTTACTGAAAGAAATACTTTATTGATTTAAATAATTATGGAC  544

seq1  TTATTATGATAATTAAACATTTTAATTAAATAACATAACATATGCTTAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGATAATTAAACATTTTAATTAAATAACATAACATATGCTTAAT  594

seq1  TTTCTAATTCAATACCCTATCTAAGCAAGCTTAAACATTTTATCAAATGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATTCAATACCCTATCTAAGCAAGCTTAAACATTTTATCAAATGC  644

seq1  CATGTAATTACTTTGACGTTTTCAACTTCCTTGCAGGATTTTTCCACATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAATTACTTTGACGTTTTCAACTTCCTTGCAGGATTTTTCCACATC  694

seq1  CGGGGTCCCACGAGCAGCATATCCTCCAAAAGAAAAGAAATACTCGGTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGTCCCACGAGCAGCATATCCTCCAAAAGAAAAGAAATACTCGGTTT  744

seq1  ATGAAGAGTCAGAAATCACTTACAAAATTGGTCGTGCAAACATGATACCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAGTCAGAAATCACTTACAAAATTGGTCGTGCAAACATGATACCC  794

seq1  AACTATTAATATACCCATGGAAAAAAATAACTGTGTGTAAATCTACATAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTAATATACCCATGGAAAAAAATAACTGTGTGTAAATCTACATAC  844

seq1  ACCAATCTTGTTATATACCAAGGAAACACTACAAATATGATTTCCATGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATCTTGTTATATACCAAGGAAACACTACAAATATGATTTCCATGCT  894

seq1  CTACATACTTTGTTTTTCTTATAATTATGATAATTGTTTTCTTTATGTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATACTTTGTTTTTCTTATAATTATGATAATTGTTTTCTTTATGTCT  944

seq1  TGAGTTTTTTTTTTCTTTGTTGGCCCCTCCTGATGACCATAATGCAAAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTTTTTTTTCTTTGTTGGCCCCTCCTGATGACCATAATGCAAAAC  994

seq1  TTTCATTTCTTCTATTCAATTCCATTAATTCACCAGATGCAGATATTTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTCTTCTATTCAATTCCATTAATTCACCAGATGCAGATATTTGT  1044

seq1  TATCTCCAAAATTTGGCACAATACCTGGGTATTTATTCATGGAATTC  1096
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCAAAATTTGGCACAATACCTGGGTATTTATTCATGGAATTC  1091

seq1: chr2_15678758_15679216
seq2: B6Ng01-143N10.g_485_958

seq1  ACCTGCAGGGATAATCACCGGGGACCCAGGGCAAGGCAGTGAGAGAGTGG  50
      ||||||||||||||||| | || ||||||||||| | |||||||||||||
seq2  ACCTGCAGGGATAATCAGCAGGAACCCAGGGCAAAGTAGTGAGAGAGTGG  50

seq1  GAGGAAAAGACACAGGAAGAATGAGAGCAAGTCAATCATACTGTTCAAGC  100
      |||| |||||  ||||||||||||||||||||||||||||||| ||||||
seq2  GAGGGAAAGAGCCAGGAAGAATGAGAGCAAGTCAATCATACTGATCAAGC  100

seq1  TCTAAAAACTTTATTCA-----GACAATATAAGCATAAGCAAGATGAGGC  145
      ||| |||||||||||||     |  ||||||||||||||||||| |||||
seq2  TCTGAAAACTTTATTCAGGAGTGGAAATATAAGCATAAGCAAGAGGAGGC  150

seq1  TCCAAGGGAGGGGATAAGAGCCCGGGGGCTCTCTGAAGGTCAGGTGGCAA  195
      |||||||||||||  |||||||| ||||||||||||||||||||||||||
seq2  TCCAAGGGAGGGGGGAAGAGCCCAGGGGCTCTCTGAAGGTCAGGTGGCAA  200

seq1  TCTTCAGCTCCTGGAACCAACAGTCACACTGTCCTC-TTTACCCACAAAC  244
       |||||||||||||||||||| |||||| ||||||| ||| |||| ||||
seq2  -CTTCAGCTCCTGGAACCAACGGTCACAGTGTCCTCTTTTTCCCATAAAC  249

seq1  A-TTCTTACTGTTATGACCACGAATGTTCTCTCAGGATTGTTTATGTAAG  293
      | ||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATTTCTTACTGTTATGACCACGAATGTTCTCTCAGGACTGTTTATGTAAG  299

seq1  CTAGAAAATATCCACAAGGCCATGGCC------ATGGATCCTGGCATCTC  337
      ||||||||||||||||||| |||||||      |||| ||||||||||||
seq2  CTAGAAAATATCCACAAGG-CATGGCCTGAGTTATGGCTCCTGGCATCTC  348

seq1  CTCCCTTTTAATTATTTTCAATCAGGCCCCACATAACTGGGGTGATCAAT  387
       ||| | ||||| ||||||| | | ||||||   ||  ||| ||||||||
seq2  TTCCTTATTAATCATTTTCACTAAAGCCCCATGGAATGGGGTTGATCAAT  398

seq1  AGTCATCTCATCCTTGGATGAGTGGGTGTTAACCAGT------GGGGGGA  431
      |||||||||||||| ||||||||||||| ||||||||      ||||| |
seq2  AGTCATCTCATCCTAGGATGAGTGGGTG-TAACCAGTCAGGTGGGGGGAA  447

seq1  GCATTGACCTGATTCCTCCCGTGGGTAC  459
      |||||||||||| ||||||   ||||||
seq2  GCATTGACCTGA-TCCTCCGTAGGGTAC  474