BAC Information

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BAC

Clone NameB6Ng01-149N09
Chromosome13 (Build37)X (Build37)
Map Location 11,236,466 - 11,236,61728,984,765 - 28,985,970
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneChrm3
Downstream geneLOC100039648, Zp4, Ryr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149N09.bB6Ng01-149N09.g
ACCDH946069DH946070
length8481,201
definitionDH946069|Mus musculus domesticus DNA, BAC clone: B6Ng01-149N09, 5' end.DH946070|Mus musculus domesticus DNA, BAC clone: B6Ng01-149N09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(11,236,466 - 11,236,617)(28,984,765 - 28,985,970)
sequence
gaattcctgaacctgataaatggcttcagtacagtacctggatataaaat
taactcaaacaaattagtggcctttctctactcaaaggctaaacaggctg
ataaagaaattagtgaaacaacagccttcacaacatcttcacttctgtat
tagtcagggttctctagagtcacagaacttatggacagtctctagatagt
aaaggaatttattgatgacttacagtcggcagcccaattcccaacaatgg
ttcagtcgcagctgtgaatggaagtccaaggatctagcagttactcagtc
tcacgtagcaagcaggcgaaggagcaggagctgagtagtattcccttgtg
taaatgtaccacattttctgtatccattcctctgttgagggacatctggg
ttgtttccagcttttggctattataaataagactgctatgaacatagtgg
agcatgtgtcctctttaccagttggaacagcttctgggtatatgcccagg
agtggtattgctgcatcttcaagtaatacaatgtccaatgttctcaggaa
ccgccagactgatttccagagtggttgtacaagcttgcaatgccaccagc
aatggaggagtgtttcctctttattcacatccttgccagcatcggctgtc
acctgaattttcaaacttagccatttctgactggtgtgaggtagaatctc
agggttgttttgattttgcatttccctgatgattaaagatgttgaacatt
tttttcaggtgctgtcagcccttcagtattcctcacttggaattcattgt
ttagctctgtaccacatttttaatgggttacttgaattctgtggtcca
gaattccaaggtctgtactgacacaagaggtcatattgaggtaagtatta
agaattggcactggagatccaaagtgtcaaagggaattctgttgatgttc
cttatccatgcatatagtcaccaaagtcaaacatataatttattttgatg
cctatgattatacgtgtaacaagaagccttgctgatgtcagtggtgcatt
ctctggacaacaactgtgcagaagtccattattcctattggtgagggaga
tcctggtgatgactatgatctgtgttgctacttgagaatctgaaaaattc
caaggtccctactaattaatgctgaaggcatactgaggtaagtgttctta
gctggcaatggagatcagattgatgtcacatcctatctttaacaggaaat
tcaattgatgttcctgatgcatgcatgtacttcctcctgttgatcatgta
gtatataaaatcgccactgcccctagaattagtagtgatgtctactacca
atcctgccactggagaagaagtttatgcccataaatttgttttcaccaaa
tttatgctgatgtcacatgtatatacctgtcaatagacaccatggtatat
attgcccatagtccatacttcttttggcaacattgttgtcagtgatccct
gctgccactgggacccatgttaagatcagtaaaccaaagtgtctgaagaa
acgtggataaggtttatcatcctttttcaccagtatcttttctttttttt
tttcatttttttattaagtattttcctcaattacatttccaatgctatcc
caaaagttctccataccctccccccactcccctactcacccattcccagt
ttttggccctggcgttcccctgtactagggattataaagtttgcatatcc
aatgggactttcttttcagtgatggccgactaggccatcttttgaaacat
atgcagctagagtcagagctacagggaactacttagttcataatgttgtt
gcatctacagagttgcagatcttctatagcacctttgaatacttctctag
ctcttcattgggggcccgtggatcatccaatagctgactgtcagcatcaa
cttctgtgttttctaggccgcgacctgacttcaaagaagaagtctattca
agttcttcaacacgctgccatggtagtgcattgggtgcatcgtttggagg
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_11236466_11236617
seq2: B6Ng01-149N09.b_407_558 (reverse)

seq1  CAGCAATACCACTCCTGGGCATATACTCAGAAGATGCTCCAACATGAAAT  50
      |||||||||||||||||||||||||| |||||| || ||||||  | || 
seq2  CAGCAATACCACTCCTGGGCATATACCCAGAAGCTGTTCCAACTGGTAAA  50

seq1  AAGGACACATGCTCCACTATGTTCTTAGCAGCCTTATTTATAACAGCCAG  100
       ||||||||||||||||||||||| |||||| ||||||||||| ||||| 
seq2  GAGGACACATGCTCCACTATGTTCATAGCAGTCTTATTTATAATAGCCAA  100

seq1  AAGCTGGAAAGAACCCAGATGTCCCTCAACAGAGCAATGGTTACAGAAAA  150
      |||||||||| ||||||||||||||||||||||| ||||| |||||||||
seq2  AAGCTGGAAACAACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAA  150

seq1  TG  152
      ||
seq2  TG  152

seq1: chrX_28984765_28985970
seq2: B6Ng01-149N09.g_69_1269

seq1  GAATTCCAAGGTCTGTACTGACACAAGAGGTCATATTGAGGTAAGTATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGTCTGTACTGACACAAGAGGTCATATTGAGGTAAGTATTA  50

seq1  AGAATTGGCACTGGAGATCCAAAGTGTCAAAGGGAATTCTGTTGATGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGGCACTGGAGATCCAAAGTGTCAAAGGGAATTCTGTTGATGTTC  100

seq1  CTTATCCATGCATATAGTCACCAAAGTCAAACATATAATTTATTTTGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCCATGCATATAGTCACCAAAGTCAAACATATAATTTATTTTGATG  150

seq1  CCTATGATTATACGTGTAACAAGAAGCCTTGCTGATGTCAGTGGTGCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGATTATACGTGTAACAAGAAGCCTTGCTGATGTCAGTGGTGCATT  200

seq1  CTCTGGACAACAACTGTGCAGAAGTCCATTATTCCTATTGGTGAGGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGACAACAACTGTGCAGAAGTCCATTATTCCTATTGGTGAGGGAGA  250

seq1  TCCTGGTGATGACTATGATCTGTGTTGCTACTTGAGAATCTGAAAAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTGATGACTATGATCTGTGTTGCTACTTGAGAATCTGAAAAATTC  300

seq1  CAAGGTCCCTACTAATTAATGCTGAAGGCATACTGAGGTAAGTGTTCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCCCTACTAATTAATGCTGAAGGCATACTGAGGTAAGTGTTCTTA  350

seq1  GCTGGCAATGGAGATCAGATTGATGTCACATCCTATCTTTAACAGGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCAATGGAGATCAGATTGATGTCACATCCTATCTTTAACAGGAAAT  400

seq1  TCAATTGATGTTCCTGATGCATGCATGTACTTCCTCCTGTTGATCATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGATGTTCCTGATGCATGCATGTACTTCCTCCTGTTGATCATGTA  450

seq1  GTATATAAAATCGCCACTGCCCCTAGAATTAGTAGTGATGTCTACTACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATAAAATCGCCACTGCCCCTAGAATTAGTAGTGATGTCTACTACCA  500

seq1  ATCCTGCCACTGGAGAAGAAGTTTATGCCCATAAATTTGTTTTCACCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGCCACTGGAGAAGAAGTTTATGCCCATAAATTTGTTTTCACCAAA  550

seq1  TTTATGCTGATGTCACATGTATATACCTGTCAATAGACACCATGGTATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCTGATGTCACATGTATATACCTGTCAATAGACACCATGGTATAT  600

seq1  ATTGCCCATAGTCCATACTTCTTTTGGCAACATTGTTGTCAGTGATCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCCATAGTCCATACTTCTTTTGGCAACATTGTTGTCAGTGATCCCT  650

seq1  GCTGCCACTGGGACCCATGTTAAGATCAGTAAAGCAAAGTGTCTGAAGAA  700
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCTGCCACTGGGACCCATGTTAAGATCAGTAAACCAAAGTGTCTGAAGAA  700

seq1  ACGTGGATAAGGTTTATCATCCTTTTTCACCAGTATCTTT--CTTTTTTT  748
      ||||||||||||||||||||||||||||||||||||||||   |||||||
seq2  ACGTGGATAAGGTTTATCATCCTTTTTCACCAGTATCTTTTCTTTTTTTT  750

seq1  TTTCATTTTTTTATTAAGTATTTTCCTCAATTACATTTCCAATGCTATCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTTTTATTAAGTATTTTCCTCAATTACATTTCCAATGCTATCC  800

seq1  CAAAAGTTCTCCATACCCTCCCCCCACTCCCCTACTCACCCATTCCCAGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTTCTCCATACCCTCCCCCCACTCCCCTACTCACCCATTCCCAGT  850

seq1  TTTTGGCCCTGGCGTTCCCCTGTACTAGGGAATATAAAGTTTGCATATCC  898
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTTGGCCCTGGCGTTCCCCTGTACTAGGGATTATAAAGTTTGCATATCC  900

seq1  AATGGGACTTTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACAT  948
      ||||||||||||||| ||||||||||||||||||||||||||||| ||||
seq2  AATGGGACTTTCTTTTCAGTGATGGCCGACTAGGCCATCTTTTGAAACAT  950

seq1  ATGCAGCTAGAGTCAAGAGCTACAGGGAACTACTTAGTTCATAATGTTGT  998
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATGCAGCTAGAGTC-AGAGCTACAGGGAACTACTTAGTTCATAATGTTGT  999

seq1  TGCATCTACAGAGTTGCAGATC-TCTATAGCACC-TTGAATACTTTCTCT  1046
      |||||||||||||||||||||| ||||||||||| |||||||| ||||||
seq2  TGCATCTACAGAGTTGCAGATCTTCTATAGCACCTTTGAATAC-TTCTCT  1048

seq1  AGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGTCAGCA  1096
      |||| || |||||||||||| |||   |||||||||||||||||||||||
seq2  AGCT-CTTCATTGGGGGCCC-GTGGATCATCCAATAGCTGACTGTCAGCA  1096

seq1  TCCACTTCTGTGTTTTCTAGGCCGCAGCCTAGTCTCACAAGAGACAGCTA  1146
      || ||||||||||||||||||||||  |||    ||| |  |||   |||
seq2  TCAACTTCTGTGTTTTCTAGGCCGCGACCTGACTTCAAAGAAGAAGTCTA  1146

seq1  TATCAAGTTCCTTTCAGCAAACGCTTGCTAGTGTA-TGCATTGGTGTCAT  1195
      | ||||||||  ||||  | |||| ||| |  ||| ||||||||   |||
seq2  T-TCAAGTTC--TTCA--ACACGC-TGCCATGGTAGTGCATTGGGTGCAT  1190

seq1  CGTTTGGAGGC  1206
      |||||||||||
seq2  CGTTTGGAGGC  1201