BAC Information

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BAC

Clone NameB6Ng01-151B18
ChromosomeX (Build37)
Map Location 149,603,376 - 149,746,523
singlet/doubletdoublet
Overlap geneRragb, Klf8, LOC100039932
Upstream geneIqsec2, Jarid1c, 2900056M20Rik, Tspyl2, Gpr173, LOC207318, EG667113, EG635412, LOC635396, EG667130, Shroom2, Gpr143, LOC100039874, LOC667147, EG624124, Usp51, LOC635253, Mageh1, EG385454, EG436240
Downstream geneEG635136, Ubqln2, Cypt3, LOC100039998, LOC667241, Kctd12b, 2210013O21Rik, Smt3h1-ps, Spin2, 4921511M17Rik, OTTMUSG00000019268, LOC625650, LOC100040020, EG546397, OTTMUSG00000019256, EG434874, LOC635580, EG625767, LOC270665, LOC100040076
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151B18.bB6Ng01-151B18.g
ACCDH947016DH947017
length1,2521,153
definitionDH947016|Mus musculus domesticus DNA, BAC clone: B6Ng01-151B18, 5' end.DH947017|Mus musculus domesticus DNA, BAC clone: B6Ng01-151B18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,603,376 - 149,604,641)(149,745,335 - 149,746,523)
sequence
gaattcatatggaatcacacaatactgagtagtcaaagcagtctcaaagc
agactgatgagcactcgagctatcacagtacctgacctcaagttgtacgg
cacatccataagacaaaattctgatacaaactaaagcagataagttgatt
gatagcaacatttctctgcctgggtgggtcagatatgtcatatatcctgc
atatcagatatttatattacaagtcataacagtaaaaaatatacaggtac
acggtagcatcaaaggtaatatgggggtccccatatgtgagaaactgtat
ccactgatctacagagatacttgcatatccatgatattgctgatctatta
tcaggattttcataatatatccagccttcgtgcttatcaagagatttaaa
gctaaagaaaactgtgcatatacagtacggattattattcatcataagga
aaaggaaaaattcccgggcggtggtggcgcacgcctttaatcccagcact
caggaggcagaggcaggcggatttctgagttcgaggccagcctggtctac
agccagggctatacagagaaaccctgtttcgaccaaaaaaaaaaaaagaa
aagaaaagaaaaaggaaaaggaaaataaatggaagtggaaattctatgtt
aagtgaaataagctactcaaacaaataacatgttttcaggctggagtgat
ggttcagtggttaagagcactgattgttcttccaaatgtcctgagttcaa
ttcccagcaaccacatggtggttcacaaccatctgatgccctcttctggt
gtgtctgaagacagctacagtgtactcataaataaaataagtcttaaaac
aacatgttttcttttatatgagaaatcttcatgtaaatttgggtctttct
gtgcaggtcataaatataacaaatgggaccattagagagtaggaagatat
ctttaagtttgattaggggaagaaaggtgaatatgatgcactattttggg
gaaaaggaactcacagcattgagggttctgagagaatgagggaaagtaga
acaaagtgtgtttgtgattgtgtgatgagaatgccatatgaaacccacta
cctttatatgctaattataagaccttattagaaaatctttggtagcactt
tttaaatggtctagatttaagcctcttttcaccttggcgctttatggaca
tcctaactggttagttatcagtccagttctctatgaaatttaaaactggt
ga
gaattcacttggcccaaagaatgcagctactaaatagtagaaccagattt
taaactcagatttcaatcctttaattgccaactttttcatttagtatgtt
tacttccatgaataaccttttcatattttgtgtccccccctttttgtata
tgagccctaccttttcaaaagattggtgaaccataactgagggttttttc
ccctcatctggcccatagcccatatcacagagtacagtatataaccaata
gtattaatttcctgccagacagccataaacctttgtgacattatcaacac
tttagctgacaatcttaacagtaataaaaattatcaactttttactcaag
atataactgtctattgaatattgcctaagtacaaagattgcataataaaa
gcacacgtcccgatacttctcgtaaactgggcggagtaaattgggtggag
taaactgggcagagtggaggtagtataggaccaatctcaggactttagat
ataggaggaggaccagcagttcaaggccagccttgtataaaatgtacaaa
gtgagtgtgaggccagcccaggttagagtaaacactgtcaaaacaaacaa
aacacaagaccacacctctaaaaatatgtctcctagttcccacgcagtgc
tcattagaaatgatacttcaaggtattacacaggtcattttcttcaccta
ataaaaccacatttactaagcactgcctgctttttgatgtcttctaaatg
cacctcaaaattatgtacgtacttttgcactattaaaagctatcagcagg
atactggaacagcagtctgtagtgaactctaaaatatgccaacacgaggc
atgtggctcttctctaataatcctcctactaaactgcctctgaaagctaa
cttaggcagaaatgtgtacaggtccatcacaattctgctgctctgtcttg
gagagaggtttagttaggagaccaaatgctcaggcaaagtgagagattat
agccacgtgagtactgaagactcagctagccaccaaaagaatccagacaa
gaaggtcaccctctcctagacatttgctttcttttttggaaactcccttc
ttggccccttccaatccaccttctcctccttcatgcctctggatttcttt
cct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_149603376_149604641
seq2: B6Ng01-151B18.b_47_1298

seq1  GAATTCATATGGAATCACACAATACTGAGTAGTCAAAGCAGTCTCAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGGAATCACACAATACTGAGTAGTCAAAGCAGTCTCAAAGC  50

seq1  AGACTGATGAGCACTCGAGCTATCACAGTACCTGACCTCAAGTTGTACGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGATGAGCACTCGAGCTATCACAGTACCTGACCTCAAGTTGTACGG  100

seq1  CACATCCATAAGACAAAATTCTGATACAAACTAAAGCAGATAAGTTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCATAAGACAAAATTCTGATACAAACTAAAGCAGATAAGTTGATT  150

seq1  GATAGCAACATTTCTCTGCCTGGGTGGGTCAGATATGTCATATATCCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCAACATTTCTCTGCCTGGGTGGGTCAGATATGTCATATATCCTGC  200

seq1  ATATCAGATATTTATATTACAAGTCATAACAGTAAAAAATATACAGGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGATATTTATATTACAAGTCATAACAGTAAAAAATATACAGGTAC  250

seq1  ACGGTAGCATCAAAGGTAATATGGGGGTCCCCATATGTGAGAAACTGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTAGCATCAAAGGTAATATGGGGGTCCCCATATGTGAGAAACTGTAT  300

seq1  CCACTGATCTACAGAGATACTTGCATATCCATGATATTGCTGATCTATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGATCTACAGAGATACTTGCATATCCATGATATTGCTGATCTATTA  350

seq1  TCAGGATTTTCATAATATATCCAGCCTTCGTGCTTATCAAGAGATTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATTTTCATAATATATCCAGCCTTCGTGCTTATCAAGAGATTTAAA  400

seq1  GCTAAAGAAAACTGTGCATATACAGTACGGATTATTATTCATCATAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGAAAACTGTGCATATACAGTACGGATTATTATTCATCATAAGGA  450

seq1  AAAGGAAAAATTCCCGGGCGGTGGTGGCGCACGCCTTTAATCCCAGCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAAATTCCCGGGCGGTGGTGGCGCACGCCTTTAATCCCAGCACT  500

seq1  CAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTAC  550

seq1  AGCCAGGGCTATACAGAGAAACCCTGTTTCGACCAAAAAAAAAAAAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGCTATACAGAGAAACCCTGTTTCGACCAAAAAAAAAAAAAGAA  600

seq1  AAGAAAAGAAAAAGGAAAAGGAAAATAAATGGAAGTGGAAATTCTATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAAAAAGGAAAAGGAAAATAAATGGAAGTGGAAATTCTATGTT  650

seq1  AAGTGAAATAAGCTACTCAAACAAATAACATGTTTTCAGGCTGGAGTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAATAAGCTACTCAAACAAATAACATGTTTTCAGGCTGGAGTGAT  700

seq1  GGTTCAGTGGTTAAGAGCACTGATTGTTCTTCCAAATGTCCTGAGTTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGTGGTTAAGAGCACTGATTGTTCTTCCAAATGTCCTGAGTTCAA  750

seq1  TTCCCAGCAACCACATGGTGGTTCACAACCATCTGATGCCCTCTTCTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGCAACCACATGGTGGTTCACAACCATCTGATGCCCTCTTCTGGT  800

seq1  GTGTCTGAAGACAGCTACAGTGTACTCATAAATAAAATAAGTCTTAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGAAGACAGCTACAGTGTACTCATAAATAAAATAAGTCTTAAAAC  850

seq1  AACATGTTTTCTTTTATATGAGAAATCTTCATGTAAATTTGGGTCTTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTTTTCTTTTATATGAGAAATCTTCATGTAAATTTGGGTCTTTCT  900

seq1  GTGCAGGTCATAAATATAACAAATGGGACCATTAGAGAGTAGGAAGATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGTCATAAATATAACAAATGGGACCATTAGAGAGTAGGAAGATAT  950

seq1  CTTTAAGTTTGATTAGGGGGAAGAAAGGTGAATATGATGCACTATTTTGG  1000
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTTTAAGTTTGATTA-GGGGAAGAAAGGTGAATATGATGCACTATTTTGG  999

seq1  GGATAAAGGAACTCACAGCAGTGAGGGTTCTGAGAGAATGAGGGAAAGTA  1050
      ||| |||||||||||||||| |||||||||||||||||||||||||||| 
seq2  GGA-AAAGGAACTCACAGCATTGAGGGTTCTGAGAGAATGAGGGAAAGT-  1047

seq1  AGAACAAAGTGTGTTTGTGATTGTGTGATGAGAAATGCCATAATGAAAAC  1100
      |||||||||||||||||||||||||||||||| |||||||| ||| ||||
seq2  AGAACAAAGTGTGTTTGTGATTGTGTGATGAG-AATGCCAT-ATG-AAAC  1094

seq1  CCACTACC-TTATATGCTAATTATAAGAAC-TATTAGAAAATCTTTGGTA  1148
      |||||||| ||||||||||||||||||| | |||||||||||||||||||
seq2  CCACTACCTTTATATGCTAATTATAAGACCTTATTAGAAAATCTTTGGTA  1144

seq1  GCACTTTTTAATATGTGTCTAGATTTAGGCCCCTTTTCACTTGTGCGCCT  1198
      ||||||||||| ||| ||||||||||| ||| |||||||| |  ||||  
seq2  GCACTTTTTAA-ATG-GTCTAGATTTAAGCCTCTTTTCACCTTGGCGC--  1190

seq1  ATATTAGTGACTATCTAAACATGTTAAGTTTATCAGTACAGTT-TCCATA  1247
         |||  ||| |||  |||  ||||   |||||||| ||||| || || 
seq2  --TTTATGGAC-ATCCTAACTGGTTA--GTTATCAGTCCAGTTCTCTAT-  1234

seq1  GAAATTTAAAACGTGGTGA  1266
      |||||||||||| ||||||
seq2  GAAATTTAAAAC-TGGTGA  1252

seq1: chrX_149745335_149746523
seq2: B6Ng01-151B18.g_64_1216 (reverse)

seq1  AGGAAA-AAATCCAGGAGCATGAAAGGGGAAAGGAAGAAAAGAGTGGAAT  49
      |||||| ||||||||  |||||        ||||| || ||| ||||| |
seq2  AGGAAAGAAATCCAGAGGCATG--------AAGGAGGAGAAG-GTGGATT  41

seq1  GGAAGAGGAGACAAAAGGAAGGGAAGTTTCCCAAAAAAGGAAAAGCAAAT  99
      ||||| ||   | ||  |||||| ||||| |||||||||  |||||||||
seq2  GGAAGGGG---CCAA--GAAGGG-AGTTT-CCAAAAAAG--AAAGCAAAT  82

seq1  GTCTTAGGGAGAGGGTGGAACTGTCTTGTCTGGGATGTCTCTTGGTGGCT  149
      ||||   ||||||||||  ||  |||||||| |||| ||| |||||||||
seq2  GTCT--AGGAGAGGGTG--ACCTTCTTGTCT-GGAT-TCTTTTGGTGGCT  126

seq1  AGCTGAGTCTTTCAGTACTCACGTGGCTATAATTCTCTCACTTTGCCCTG  199
      ||||||||| |||||||||||||||||||||| |||||||||||| ||||
seq2  AGCTGAGTC-TTCAGTACTCACGTGGCTATAA-TCTCTCACTTTG-CCTG  173

seq1  AGCATTTGGTTCTCCTAACTTAAACCTTCCTTCTCCAAGGACAGAGCAGC  249
      ||||||||| ||||||||| |||||||    ||||||| |||||||||||
seq2  AGCATTTGG-TCTCCTAAC-TAAACCT---CTCTCCAA-GACAGAGCAGC  217

seq1  AGAATTGTGATGGACCTTGTTACACATTTCTGCCTAAGTTAGCTTTTCAG  299
      |||||||||||||||||   ||||||||||||||||||||||| ||||||
seq2  AGAATTGTGATGGACCT--GTACACATTTCTGCCTAAGTTAGC-TTTCAG  264

seq1  AGGCAGTTTAGTAGGAGGATTATTAGAGAAGAGCCACATGCCTCGTGTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTTTAGTAGGAGGATTATTAGAGAAGAGCCACATGCCTCGTGTTG  314

seq1  GCATATTTTAGAGTTCACTACAGACCTGCTGTTCCAGTATCCTGCTGATA  399
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCATATTTTAGAGTTCACTACAGA-CTGCTGTTCCAGTATCCTGCTGATA  363

seq1  GCTTTTAATAGTGCAAAAGTACGTACATAATTTTGAGGTGCATTTAGAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAATAGTGCAAAAGTACGTACATAATTTTGAGGTGCATTTAGAAG  413

seq1  ACATCAAAAAGCAGGCAGTGCTTAGTAAATGTGGTTTTATTAGGTGAAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAAAAGCAGGCAGTGCTTAGTAAATGTGGTTTTATTAGGTGAAGA  463

seq1  AAATGACCTGTGTAATACCTTGAAGTATCATTTCTAATGAGCACTGCGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACCTGTGTAATACCTTGAAGTATCATTTCTAATGAGCACTGCGTG  513

seq1  GGAACTAGGAGACATATTTTTAGAGGTGTGGTCTTGTGTTTTGTTTGTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTAGGAGACATATTTTTAGAGGTGTGGTCTTGTGTTTTGTTTGTTT  563

seq1  TGACAGTGTTTACTCTAACCTGGGCTGGCCTCACACTCACTTTGTACATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTGTTTACTCTAACCTGGGCTGGCCTCACACTCACTTTGTACATT  613

seq1  TTATACAAGGCTGGCCTTGAACTGCTGGTCCTCCTCCTATATCTAAAGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACAAGGCTGGCCTTGAACTGCTGGTCCTCCTCCTATATCTAAAGTC  663

seq1  CTGAGATTGGTCCTATACTACCTCCACTCTGCCCAGTTTACTCCACCCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATTGGTCCTATACTACCTCCACTCTGCCCAGTTTACTCCACCCAA  713

seq1  TTTACTCCGCCCAGTTTACGAGAAGTATCGGGACGTGTGCTTTTATTATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCCGCCCAGTTTACGAGAAGTATCGGGACGTGTGCTTTTATTATG  763

seq1  CAATCTTTGTACTTAGGCAATATTCAATAGACAGTTATATCTTGAGTAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTTGTACTTAGGCAATATTCAATAGACAGTTATATCTTGAGTAAA  813

seq1  AAGTTGATAATTTTTATTACTGTTAAGATTGTCAGCTAAAGTGTTGATAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGATAATTTTTATTACTGTTAAGATTGTCAGCTAAAGTGTTGATAA  863

seq1  TGTCACAAAGGTTTATGGCTGTCTGGCAGGAAATTAATACTATTGGTTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAAAGGTTTATGGCTGTCTGGCAGGAAATTAATACTATTGGTTAT  913

seq1  ATACTGTACTCTGTGATATGGGCTATGGGCCAGATGAGGGGAAAAAACCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTACTCTGTGATATGGGCTATGGGCCAGATGAGGGGAAAAAACCC  963

seq1  TCAGTTATGGTTCACCAATCTTTTGAAAAGGTAGGGCTCATATACAAAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTATGGTTCACCAATCTTTTGAAAAGGTAGGGCTCATATACAAAAA  1013

seq1  GGGGGGGACACAAAATATGAAAAGGTTATTCATGGAAGTAAACATACTAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGACACAAAATATGAAAAGGTTATTCATGGAAGTAAACATACTAA  1063

seq1  ATGAAAAAGTTGGCAATTAAAGGATTGAAATCTGAGTTTAAAATCTGGTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAGTTGGCAATTAAAGGATTGAAATCTGAGTTTAAAATCTGGTT  1113

seq1  CTACTATTTAGTAGCTGCATTCTTTGGGCCAAGTGAATTC  1189
      ||||||||||||||||||||||||||||||||||||||||
seq2  CTACTATTTAGTAGCTGCATTCTTTGGGCCAAGTGAATTC  1153