BAC Information

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BAC

Clone NameB6Ng01-151I08
Chromosome3 (Build37)X (Build37)
Map Location 37,019,283 - 37,020,38583,701,136 - 83,701,216
singlet/doubletsingletsinglet
Overlap geneIl2
Upstream geneD3Ertd254e, Gpr103, Anxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987
Downstream geneIl21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151I08.bB6Ng01-151I08.g
ACCDH947319DH947320
length1,08078
definitionDH947319|Mus musculus domesticus DNA, BAC clone: B6Ng01-151I08, 5' end.DH947320|Mus musculus domesticus DNA, BAC clone: B6Ng01-151I08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(37,019,283 - 37,020,385)(83,701,136 - 83,701,216)
sequence
gaattctacagaagtgttcagtgttcccatcaaatgctcgttggtaatca
actctggagagctttattttttatgctttaccatttgatatcataataaa
acataacccaataattgtgatcatttcagaaatgtgaatgttcaatatat
ttaaccagtgttaaaataaatgcctaaaagcttccgtgaagaataattat
atgcaaagtaagctaccttagcctacaattttatattcttttttagggct
ctgacaacacatttgagtgccaattcgatgatgagtcagcaactgtggtg
gactttctgaggagatggatagccttctgtcaaagcatcatctcaacaag
ccctcaataactatgtacctcctgcttacaacacataaggctctctattt
atttaaatatttaactttaatttatttttggatgtattgtttactatctt
ttgtaactactagtcttcagatgataaatatggatctttaaagattcttt
ttgtaagccccaagggctcaaaaatgttttaaactatttatctgaaatta
tttattatattgaattgttaaatatcatgtgtaggtagactcattaataa
aagtatttagatgattcaaatataaataagctcagatgtctgtcattttt
aggacagcacaaagtaagcgctaaaataacttctcagttattcctgtgaa
ctctatgttaatcagtgttttcaagaaataaagctctcctctaaaaaaaa
ataaagatggcttgtgggaaaagatctcctctccagggagctaacatcag
ctcagagtttactgaagaattcatcttcacctgataaagatggttgctgg
tttggaatctacacctgcacacttttacttcttccgtccttcctgtcttt
caaataaaatcttattttggcaaaggcaaaaaaaaaaatcactttccctg
gagaagtgtacatagacagatatctcacatttcttacattttccttagtg
ctgatgatttagtctggtataagaaagctatcagaattattcatttcttt
aagtttaacagtatactagccaaaaaaaaa
ctgatctttccaagacttttaacatgaagggatgctgaattttgtcaaat
gcttttcagcatctaatgacatgatcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_37019283_37020385
seq2: B6Ng01-151I08.b_46_1125 (reverse)

seq1  TTTTTTTTTGCTTAGTATACTGTTTAAACTTAAAAGAAATGAAATTATTT  50
      ||||||||||  |||||||||| |||||||| |||||||||||  || ||
seq2  TTTTTTTTTGGCTAGTATACTG-TTAAACTT-AAAGAAATGAA--TAATT  46

seq1  CCTGATAAGCTTTTCTTATACCAGAACTAAAAATTCAATCAGCACTTAAA  100
       ||||| ||| ||||||||||||| ||||||   || |||||||||   |
seq2  -CTGAT-AGC-TTTCTTATACCAG-ACTAAA---TC-ATCAGCACT---A  85

seq1  AGGAAAATGTAAGAAATGTGAGATATTCCTGTCTTATGTTACACTTCTCC  150
      ||||||||||||||||||||||||||  ||||| |||| |||||||||||
seq2  AGGAAAATGTAAGAAATGTGAGATAT--CTGTC-TATG-TACACTTCTCC  131

seq1  AGGGGAAAGTGATTTTTTTTTTTTTGCCTTTGCCAAAATAAGATTTTATT  200
      | ||||||||||  |||||||||||||||||||||||||||||||||| |
seq2  A-GGGAAAGTGA--TTTTTTTTTTTGCCTTTGCCAAAATAAGATTTTA-T  177

seq1  TTGAAAGACAGGAAGGACGGAAGAAGTAAAAGTGTGCAGGTGTAGATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGACAGGAAGGACGGAAGAAGTAAAAGTGTGCAGGTGTAGATTCC  227

seq1  AAACCAGCAACCATCTTTATCAGGTGAAGATGAATTCTTCAGTAAACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGCAACCATCTTTATCAGGTGAAGATGAATTCTTCAGTAAACTCT  277

seq1  GAGCTGATGTTAGCTCCCTGGAGAGGAGATCTTTTCCCACAAGCCATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGATGTTAGCTCCCTGGAGAGGAGATCTTTTCCCACAAGCCATCTT  327

seq1  TATTTTTTTTTAGAGGAGAGCTTTATTTCTTGAAAACACTGATTAACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTTTAGAGGAGAGCTTTATTTCTTGAAAACACTGATTAACATA  377

seq1  GAGTTCACAGGAATAACTGAGAAGTTATTTTAGCGCTTACTTTGTGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCACAGGAATAACTGAGAAGTTATTTTAGCGCTTACTTTGTGCTGT  427

seq1  CCTAAAAATGACAGACATCTGAGCTTATTTATATTTGAATCATCTAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAATGACAGACATCTGAGCTTATTTATATTTGAATCATCTAAATA  477

seq1  CTTTTATTAATGAGTCTACCTACACATGATATTTAACAATTCAATATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTAATGAGTCTACCTACACATGATATTTAACAATTCAATATAAT  527

seq1  AAATAATTTCAGATAAATAGTTTAAAACATTTTTGAGCCCTTGGGGCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTTCAGATAAATAGTTTAAAACATTTTTGAGCCCTTGGGGCTTA  577

seq1  CAAAAAGAATCTTTAAAGATCCATATTTATCATCTGAAGACTAGTAGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGAATCTTTAAAGATCCATATTTATCATCTGAAGACTAGTAGTTA  627

seq1  CAAAAGATAGTAAACAATACATCCAAAAATAAATTAAAGTTAAATATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGATAGTAAACAATACATCCAAAAATAAATTAAAGTTAAATATTTA  677

seq1  AATAAATAGAGAGCCTTATGTGTTGTAAGCAGGAGGTACATAGTTATTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAGAGAGCCTTATGTGTTGTAAGCAGGAGGTACATAGTTATTGA  727

seq1  GGGCTTGTTGAGATGATGCTTTGACAGAAGGCTATCCATCTCCTCAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGTTGAGATGATGCTTTGACAGAAGGCTATCCATCTCCTCAGAAA  777

seq1  GTCCACCACAGTTGCTGACTCATCATCGAATTGGCACTCAAATGTGTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACCACAGTTGCTGACTCATCATCGAATTGGCACTCAAATGTGTTGT  827

seq1  CAGAGCCCTAAAAAAGAATATAAAATTGTAGGCTAAGGTAGCTTACTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCCTAAAAAAGAATATAAAATTGTAGGCTAAGGTAGCTTACTTTG  877

seq1  CATATAATTATTCTTCACGGAAGCTTTTAGGCATTTATTTTAACACTGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAATTATTCTTCACGGAAGCTTTTAGGCATTTATTTTAACACTGGT  927

seq1  TAAATATATTGAACATTCACATTTCTGAAATGATCACAATTATTGGGTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATATTGAACATTCACATTTCTGAAATGATCACAATTATTGGGTTA  977

seq1  TGTTTTATTATGATATCAAATGGTAAAGCATAAAAAATAAAGCTCTCCAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATTATGATATCAAATGGTAAAGCATAAAAAATAAAGCTCTCCAG  1027

seq1  AGTTGATTACCAACGAGCATTTGATGGGAACACTGAACACTTCTGTAGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATTACCAACGAGCATTTGATGGGAACACTGAACACTTCTGTAGAA  1077

seq1  TTC  1103
      |||
seq2  TTC  1080

seq1: chrX_83701136_83701216
seq2: B6Ng01-151I08.g_69_148 (reverse)

seq1  ATGATCATCTCACTAGATGTTGAAAAAACATTTGACAAAATCCAACATCC  50
      |||||||| ||| |||||| || |||| ||||||||||||| || |||||
seq2  ATGATCATGTCATTAGATGCTG-AAAAGCATTTGACAAAATTCAGCATCC  49

seq1  TTTCATGTTAAAAGTCTTGGAAAGATCAGGA  81
       ||||||||||||||||||||||||||||||
seq2  CTTCATGTTAAAAGTCTTGGAAAGATCAGGA  80