BAC Information

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BAC

Clone NameB6Ng01-153B19
Chromosome14 (Build37)X (Build37)
Map Location 49,506,536 - 49,507,591121,197,988 - 121,198,332
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972
Downstream geneExoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4, 3632451O06Rik, LOC667006
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153B19.bB6Ng01-153B19.g
ACCDH948514DH948515
length1,056561
definitionDH948514|Mus musculus domesticus DNA, BAC clone: B6Ng01-153B19, 5' end.DH948515|Mus musculus domesticus DNA, BAC clone: B6Ng01-153B19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,506,536 - 49,507,591)(121,197,988 - 121,198,332)
sequence
gaattctatgggctcttgcatatacaggatacacagtcctacatgcagga
aaaacacccatataccatgcatacaaacatttttttcaatgaaaaaacta
tttagtaaaagaaagaaacgaaccaccagaatgagtgtcacccttaaagg
atgcattctttcaatacgggagacagacttacaagtgagtagaggggtgg
tgtggaaactaagtatataaagttggtgtggccataacacagcagcactc
atctgttcttgcaacagagcaaagaaaccaggcaactgccagcaagggaa
atcaggctagaaaacccaaaagtcctaggcaccaacacttgatgttcttg
tgactttaaaaagctcccaatcagaggggaggtggccccagccatctctc
tttgcaggaactcacacacctagaaaacaaatacatacagttatgcacca
ccgtgggaacgtactgtgaagccaatggagagaaacataataaacatgtc
atacaagaagcatatgctatgatgtaaagctttgggttctccacagtgca
gctccattgtaacaaccaaagcacgggcatgtagcaaaacagaataagaa
gtctggcatgcaggccagcagaagccatccggccagcgcacagccttgtt
aagcccggcttgccaccctgaggacacttctgctgcaccagaaaccttgt
ccatccccaaagaccacagagctaaattaaacaatgagcatgaactgaag
cacatgtctgagaagtcacagcatattataaataatgctcttcgttatta
atttctggaaagagctgtttttaattaatctggtgataattgtgtttcac
aaatgaaagggcttcaatgcactataataaaggactaaatattaagaaaa
ggtacactttttctaagagacttaatacaccccagatgttacgagtttgg
tgattttatgtactatgtcttttatgtaattggtggtttgattccctaaa
atagtccactgttttgtatttttacctagttttaattaagacatgctgac
gatgac
ataagttagaaggctggagagatggctggagagaacctaagagaacaggt
ctgtgtgttggttccttgagtcgcttgcatgcttgcttccctctgtccct
ccattcctcctttctcccctccctctctcccccttcctctcttcctccct
ccctcctttccttccttccttccttccttccttccttccttccttccctc
cctcgttcagaccttagtccaaataactttgatggcaaatctaaaaaaag
ccacactgtaaattcagcatgtgctcagaaatacaaatatgatttttaag
aaatcccaccttttattatgaacaataaatataactgcgaaaattttacc
ttttagaaaatcacatggataatacatgtttttaggatacgacacacctc
aagcataacaaaattcattttatgtatttatacacacacacacataatca
tgtattctgagccagaaatgcaatctcttactgtttgaatctgttacaaa
gatatttctgtcacatatattctcgctttaaagtagataaaaatccagta
tatcattgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_49506536_49507591
seq2: B6Ng01-153B19.b_49_1104 (reverse)

seq1  GTCATCGTCAGCATGTCTTA--TATAAACATGTAAAAATACAAAAACAGT  48
      ||||||||||||||||||||  || ||  | |||||||||| ||||||||
seq2  GTCATCGTCAGCATGTCTTAATTAAAACTAGGTAAAAATAC-AAAACAGT  49

seq1  GGACTATTTTAAGGGAATCAAA-CACCAATTACATAAAAGACATAGTTAC  97
      |||||||||| ||||||||||| ||||||||||||||||||||||| |||
seq2  GGACTATTTT-AGGGAATCAAACCACCAATTACATAAAAGACATAG-TAC  97

seq1  ATAAAATCACCAAACTCGTAACATCTGGGGTGTATTAAGTCTCTTAG-AA  146
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATAAAATCACCAAACTCGTAACATCTGGGGTGTATTAAGTCTCTTAGAAA  147

seq1  AAGTGTACCTTTTCTTAATATTTAGTCCTTTATTATAGTGCATTTGAAGC  196
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAGTGTACCTTTTCTTAATATTTAGTCCTTTATTATAGTGCA-TTGAAGC  196

seq1  CCTTTCATTTGTGAAACACAATTATCACCAGATTAATTAAAAACAGCTCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCATTTGTGAAACACAATTATCACCAGATTAATTAAAAACAGCTCT  246

seq1  TTCCAGAAATTAATAACGAAGAGCCTTATTTATAATATGCTGTGACTTCT  296
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTCCAGAAATTAATAACGAAGAGCATTATTTATAATATGCTGTGACTTCT  296

seq1  CAGACATGTGCTTCAGTTCATGCTCATTGTTTAATTTAGCTCTGTGGTCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATGTGCTTCAGTTCATGCTCATTGTTTAATTTAGCTCTGTGGTCT  346

seq1  TTGGGGATGGACAAGGTTTCTGGTGCAGCAGAAGTGTCCTCAGGGTGGCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGATGGACAAGGTTTCTGGTGCAGCAGAAGTGTCCTCAGGGTGGCA  396

seq1  AGCCGGGCTTAACAAGGCTGTGCGCTGGCCGGATGGCTTCTGCTGGCCTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGGGCTTAACAAGGCTGTGCGCTGGCCGGATGGCTTCTGCTGGCCTG  446

seq1  CATGCCAGACTTCTTATTCTGTTTTGCTACATGCCCGTGCTTTGGTTGTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCAGACTTCTTATTCTGTTTTGCTACATGCCCGTGCTTTGGTTGTT  496

seq1  ACAATGGAGCTGCACTGTGGAGAACCCAAAGCTTTACATCATAGCATATG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGAGCTGCACTGTGGAGAACCCAAAGCTTTACATCATAGCATATG  546

seq1  CTTCTTGTATGACATGTTTATTATGTTTCTCTCCATTGGCTTCACAGTAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGTATGACATGTTTATTATGTTTCTCTCCATTGGCTTCACAGTAC  596

seq1  GTTCCCACGGTGGTGCATAACTGTATGTATTTGTTTTCTAGGTGTGTGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCACGGTGGTGCATAACTGTATGTATTTGTTTTCTAGGTGTGTGAG  646

seq1  TTCCTGCAAAGAGAGATGGCTGGGGCCACCTCCCCTCTGATTGGGAGCTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCAAAGAGAGATGGCTGGGGCCACCTCCCCTCTGATTGGGAGCTT  696

seq1  TTTAAAGTCACAAGAACATCAAGTGTTGGTGCCTAGGACTTTTGGGTTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTCACAAGAACATCAAGTGTTGGTGCCTAGGACTTTTGGGTTTT  746

seq1  CTAGCCTGATTTCCCTTGCTGGCAGTTGCCTGGTTTCTTTGCTCTGTTGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTGATTTCCCTTGCTGGCAGTTGCCTGGTTTCTTTGCTCTGTTGC  796

seq1  AAGAACAGATGAGTGCTGCTGTGTTATGGCCACACCAACTTTATATACTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGATGAGTGCTGCTGTGTTATGGCCACACCAACTTTATATACTT  846

seq1  AGTTTCCACACCACCCCTCTACTCACTTGTAAGTCTGTCTCCCGTATTGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCACACCACCCCTCTACTCACTTGTAAGTCTGTCTCCCGTATTGA  896

seq1  AAGAATGCATCCTTTAAGGGTGACACTCATTCTGGTGGTTCGTTTCTTTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGCATCCTTTAAGGGTGACACTCATTCTGGTGGTTCGTTTCTTTC  946

seq1  TTTTACTAAATAGTTTTTTCATTGAAAAAAATGTTTGTATGCATGGTATA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTAAATAGTTTTTTCATTGAAAAAAATGTTTGTATGCATGGTATA  996

seq1  TGGGTGTTTTTCCTGCATGTAGGACTGTGTATCCTGTATATGCAAGAGCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTTTTTCCTGCATGTAGGACTGTGTATCCTGTATATGCAAGAGCC  1046

seq1  CATAGAATTC  1056
      ||||||||||
seq2  CATAGAATTC  1056

seq1: chrX_121197988_121198332
seq2: B6Ng01-153B19.g_287_632 (reverse)

seq1  TGTCAATGATATAATGGATTTTTCTCTTCTTT-AAGAGAGAATCTATGTG  49
      ||||||||||||| ||||||||| ||| |||| ||| |||||| ||||||
seq2  TGTCAATGATATACTGGATTTTTATCTACTTTAAAGCGAGAATATATGTG  50

seq1  ACAAAAATATCTTTGTAACAGATTCAAACAGTAAGAGATTGCATTTCTGG  99
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATATCTTTGTAACAGATTCAAACAGTAAGAGATTGCATTTCTGG  100

seq1  CTCAGACTACATGTTTATGTGTGTGTGTGTATAAATACATATAATGAATT  149
      |||||| |||||| ||||||||||||||||||||||||||| ||||||||
seq2  CTCAGAATACATGATTATGTGTGTGTGTGTATAAATACATAAAATGAATT  150

seq1  TTGTTATGCTTGAGGTGTGTAGTTTCCTTCTAACTTGTATTATCCATGTG  199
      |||||||||||||||||||| || ||||   ||| |||||||||||||||
seq2  TTGTTATGCTTGAGGTGTGTCGTATCCTAAAAACATGTATTATCCATGTG  200

seq1  ATTTTCTTAAAGGTTAAATTCTGGCAGTTATATTTATTGTTCATAATAAA  249
      ||||||| |||||| ||||| | |||||||||||||||||||||||||||
seq2  ATTTTCTAAAAGGTAAAATTTTCGCAGTTATATTTATTGTTCATAATAAA  250

seq1  AGGTGGGATTTCTTAAAAATCATATTTGTATTTCTGAGCACATGCTGAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGATTTCTTAAAAATCATATTTGTATTTCTGAGCACATGCTGAAT  300

seq1  TTACAGTGTTGCTTTTTTTAGATTTGCCATTTGTGTTATTTTGACT  345
      ||||||||| ||||||||||||||||||||    ||||||| ||||
seq2  TTACAGTGTGGCTTTTTTTAGATTTGCCATCAAAGTTATTTGGACT  346