BAC Information

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BAC

Clone NameB6Ng01-154B09
ChromosomeX (Build37)
Map Location 84,965,812 - 85,101,517
singlet/doubletdoublet
Overlap genenone
Upstream geneIl1rapl1, LOC667876
Downstream geneEG667883, LOC667891, EG245506, LOC667911, LOC100041707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154B09.bB6Ng01-154B09.g
ACCDH949225DH949226
length1,1121,122
definitionDH949225|Mus musculus domesticus DNA, BAC clone: B6Ng01-154B09, 5' end.DH949226|Mus musculus domesticus DNA, BAC clone: B6Ng01-154B09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,100,398 - 85,101,517)(84,965,812 - 84,966,955)
sequence
gaattcatataaatcatacaatataattcatagaagataggcaggcataa
aagtaattgtgcttctctgaaatgtcctatattactaaggaaagaaaacg
tagccctaatgtaaaacctattggtagcatcacataacagaaaatacttt
agaaacttatgaaataaaatactagtttaacattttaatgaggcatttat
ggaaatacatggaaaatatgtaatgcagtgaccacttcaaaattgttata
tcacaatattgaaaatttttctactcgtgaaaagaagatcttaagtgatt
atttctttggtttttataaaacgaatatgtatgtgtaactaatatcttat
tcaagcagttacatttgtattactcattaccttatgccaatcaacccaaa
agtaaattgtgttctcatatatttgtatagatttgttgttttgttcattt
atgcatttatgtattcatttatatgttcacttatttgtttttgaaagtgc
tagaattcagactcaaggcttttattatgcttaacaagtactctaaggga
gcaacacctctagtcatgatgttcgttctgatttctgtagcactcaatta
attatagctatcctagattgacatacccatgaaaatattattatacaatc
cagtaggtcttccatctttgctaaatttaatgtttttaaaattcaatgcc
atcatgtaagttgttcactattatatttcacttataaaagaaaaggcatt
tttagaaaattttcttgcaagagatattctattaagacatttaattattc
ggtactgttgtaaagaaaagtaagaccataagttcttaaaaaggacataa
aatgaaaataaaactccatactgaaggcttatacttctcagagagtggtg
cgcatgttagttattatttggagagaatttcaagaagtagtgttagcttc
tctttgagggatttcggatggctctcatgatgatgaagtatagtacactg
caagcactgaatgatgtgtactgagtatgctaaaactatggagatttatt
cccagatgggaacaaatgagatggttaaaaactagcatgatatgcgagca
ctgtcgatgtaa
gaattctgtatgttgcaaaactgagaatggaagagaaatcagtttgttca
catttgtaaaacaacctgcgtaaagcattgcaggtgggagaagagaactc
cctccaagtgacagagagccatttggaatcaatgaatcactcatggctct
cctgggagtcaagatgatttgcatgtttggagacttttgtagaaaaagct
agtaaattacattatatttgctgtaagtgtctgttatctcattcatggaa
agatgaacatttctactctatgtactaaatatttgcattgttcaaatgca
ctgtaattctatgaatgatctgaaaatatccatcagtcaaatcctatgaa
tgtggaatacagagaagcctttcactagtgataacttacatttcatgagg
tattttgggtagttttagcattggacatatttaataagatttttattagc
atactgaatttcttctcactgtacataagaagaaaacaaacaaaaatcct
aacacagcaaaaaacttgttacctaaaatttgtatttatatttttggcac
agaaagtatcttcatcaaagcattactaaatataaatactaacacagaaa
atttctgtttaaaatcaaactaaagctaccccagagcaggtagctttctt
tccttcatttccttaagacattaattcctgcctttctattactttgcaat
atataacagctcagcaattttgccactgaaagtatttctttcatgaccat
gacctagtatttcactgtactctgtacctcaaggtatcttcatgtcttcc
acattgcctttcaatgaggccatactctagatgtttgtagcagtttagtt
ttaagcatttaagtcctatgttctatttatttggccaattttcataacta
ttgcaataaacttattttatcatcaagccttgtaataaagttacctatag
attccctatatttcccttcatatttcactgctctctaagactatattcac
agtgtgttgcagatgtgttttgaatatgtcccagactcctagtttgcttc
agttctagtgctcgtttgttaacagatacttcttttacctcttcctgtca
gtttcttttattggattctgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_85100398_85101517
seq2: B6Ng01-154B09.b_45_1156 (reverse)

seq1  TTACATTCTGACAGTGCTCGCATATCATGCTAGTTTTTAACCAATCTCAT  50
      ||||||   ||||||||||||||||||||||||||||||||| |||||||
seq2  TTACAT--CGACAGTGCTCGCATATCATGCTAGTTTTTAACC-ATCTCAT  47

seq1  TTGTTCCCATCTGGGAATAAATCTCCATAGTTTTAGCATACTCAGTACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCCATCTGGGAATAAATCTCCATAGTTTTAGCATACTCAGTACAC  97

seq1  ATCATTCAGTGCTTGCAGTGTACTATACCTTCATTCATCATGGAGAGCCA  150
      ||||||||||||||||||||||||||| ||||| ||||||| ||||||||
seq2  ATCATTCAGTGCTTGCAGTGTACTATA-CTTCA-TCATCAT-GAGAGCCA  144

seq1  TCCGAAATCCCTCAAAGAGAAGCTAACACTACCTTCTTGAAAATTCTCTC  200
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  TCCGAAATCCCTCAAAGAGAAGCTAACACTA-CTTCTTG-AAATTCTCTC  192

seq1  CAAATAATAACTAACATGCGCACCACTCTCTGAGAAGTATAAGCCTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATAACTAACATGCGCACCACTCTCTGAGAAGTATAAGCCTTCAG  242

seq1  TATGGAGTTTTATTTTCATTTTATGTCCTTTTTAAGAACTTATGGTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGTTTTATTTTCATTTTATGTCCTTTTTAAGAACTTATGGTCTTA  292

seq1  CTTTTCTTTACAACAGTACCGAATAATTAAATGTCTTAATAGAATATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTACAACAGTACCGAATAATTAAATGTCTTAATAGAATATCTC  342

seq1  TTGCAAGAAAATTTTCTAAAAATGCCTTTTCTTTTATAAGTGAAATATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGAAAATTTTCTAAAAATGCCTTTTCTTTTATAAGTGAAATATAA  392

seq1  TAGTGAACAACTTACATGATGGCATTGAATTTTAAAAACATTAAATTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAACAACTTACATGATGGCATTGAATTTTAAAAACATTAAATTTAG  442

seq1  CAAAGATGGAAGACCTACTGGATTGTATAATAATATTTTCATGGGTATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATGGAAGACCTACTGGATTGTATAATAATATTTTCATGGGTATGT  492

seq1  CAATCTAGGATAGCTATAATTAATTGAGTGCTACAGAAATCAGAACGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTAGGATAGCTATAATTAATTGAGTGCTACAGAAATCAGAACGAAC  542

seq1  ATCATGACTAGAGGTGTTGCTCCCTTAGAGTACTTGTTAAGCATAATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGACTAGAGGTGTTGCTCCCTTAGAGTACTTGTTAAGCATAATAAA  592

seq1  AGCCTTGAGTCTGAATTCTAGCACTTTCAAAAACAAATAAGTGAACATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGAGTCTGAATTCTAGCACTTTCAAAAACAAATAAGTGAACATAT  642

seq1  AAATGAATACATAAATGCATAAATGAACAAAACAACAAATCTATACAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATACATAAATGCATAAATGAACAAAACAACAAATCTATACAAAT  692

seq1  ATATGAGAACACAATTTACTTTTGGGTTGATTGGCATAAGGTAATGAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGAACACAATTTACTTTTGGGTTGATTGGCATAAGGTAATGAGTA  742

seq1  ATACAAATGTAACTGCTTGAATAAGATATTAGTTACACATACATATTCGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAATGTAACTGCTTGAATAAGATATTAGTTACACATACATATTCGT  792

seq1  TTTATAAAAACCAAAGAAATAATCACTTAAGATCTTCTTTTCACGAGTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAAAACCAAAGAAATAATCACTTAAGATCTTCTTTTCACGAGTAG  842

seq1  AAAAATTTTCAATATTGTGATATAACAATTTTGAAGTGGTCACTGCATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTTCAATATTGTGATATAACAATTTTGAAGTGGTCACTGCATTA  892

seq1  CATATTTTCCATGTATTTCCATAAATGCCTCATTAAAATGTTAAACTAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTCCATGTATTTCCATAAATGCCTCATTAAAATGTTAAACTAGT  942

seq1  ATTTTATTTCATAAGTTTCTAAAGTATTTTCTGTTATGTGATGCTACCAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTCATAAGTTTCTAAAGTATTTTCTGTTATGTGATGCTACCAA  992

seq1  TAGGTTTTACATTAGGGCTACGTTTTCTTTCCTTAGTAATATAGGACATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTTACATTAGGGCTACGTTTTCTTTCCTTAGTAATATAGGACATT  1042

seq1  TCAGAGAAGCACAATTACTTTTATGCCTGCCTATCTTCTATGAATTATAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAAGCACAATTACTTTTATGCCTGCCTATCTTCTATGAATTATAT  1092

seq1  TGTATGATTTATATGAATTC  1120
      ||||||||||||||||||||
seq2  TGTATGATTTATATGAATTC  1112

seq1: chrX_84965812_84966955
seq2: B6Ng01-154B09.g_68_1189

seq1  GAATTCTGTATGTTGCAAAACTGAGAATGGAAGAGAAATCAGTTTGTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTATGTTGCAAAACTGAGAATGGAAGAGAAATCAGTTTGTTCA  50

seq1  CATTTGTAAAACAACCTGCGTAAAGCATTGCAGGTGGGAGAAGAGAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTAAAACAACCTGCGTAAAGCATTGCAGGTGGGAGAAGAGAACTC  100

seq1  CCTCCAAGTGACAGAGAGCCATTTGGAATCAATGAATCACTCATGGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAGTGACAGAGAGCCATTTGGAATCAATGAATCACTCATGGCTCT  150

seq1  CCTGGGAGTCAAGATGATTTGCATGTTTGGAGACTTTTGTAGAAAAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAGTCAAGATGATTTGCATGTTTGGAGACTTTTGTAGAAAAAGCT  200

seq1  AGTAAATTACATTATATTTGCTGTAAGTGTCTGTTATCTCATTCATGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATTACATTATATTTGCTGTAAGTGTCTGTTATCTCATTCATGGAA  250

seq1  AGATGAACATTTCTACTCTATGTACTAAATATTTGCATTGTTCAAATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAACATTTCTACTCTATGTACTAAATATTTGCATTGTTCAAATGCA  300

seq1  CTGTAATTCTATGAATGATCTGAAAATATCCATCAGTCAAATCCTATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATTCTATGAATGATCTGAAAATATCCATCAGTCAAATCCTATGAA  350

seq1  TGTGGAATACAGAGAAGCCTTTCACTAGTGATAACTTACATTTCATGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAATACAGAGAAGCCTTTCACTAGTGATAACTTACATTTCATGAGG  400

seq1  TATTTTGGGTAGTTTTAGCATTGGACATATTTAATAAGATTTTTATTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGGGTAGTTTTAGCATTGGACATATTTAATAAGATTTTTATTAGC  450

seq1  ATACTGAATTTCTTCTCACTGTACATAAGAAGAAAACAAACAAAAATCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAATTTCTTCTCACTGTACATAAGAAGAAAACAAACAAAAATCCT  500

seq1  AACACAGCAAAAAACTTGTTACCTAAAATTTGTATTTATATTTTTGGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGCAAAAAACTTGTTACCTAAAATTTGTATTTATATTTTTGGCAC  550

seq1  AGAAAGTATCTTCATCAAAGCATTACTAAATATAAATACTAACACAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTATCTTCATCAAAGCATTACTAAATATAAATACTAACACAGAAA  600

seq1  ATTTCTGTTTAAAATCAAACTAAAGCTACCCCAGAGCAGGTAGCTTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTTTAAAATCAAACTAAAGCTACCCCAGAGCAGGTAGCTTTCTT  650

seq1  TCCTTCATTTCCTTAAGACATTAATTCCTGCCTTTCTATTACTTTGCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCATTTCCTTAAGACATTAATTCCTGCCTTTCTATTACTTTGCAAT  700

seq1  ATATAACAGCTCAGCAATTTTGCCACTGAAAGTATTTCTTTCATGACCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACAGCTCAGCAATTTTGCCACTGAAAGTATTTCTTTCATGACCAT  750

seq1  GACCTAGTATTTCACTGTACTCTGTACCTCAAGGTATCTTCATGTCTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAGTATTTCACTGTACTCTGTACCTCAAGGTATCTTCATGTCTTCC  800

seq1  ACATTGCCTTTCAATGAGGCCATACTCTAGATGTTTGTAGCAGTTTAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCCTTTCAATGAGGCCATACTCTAGATGTTTGTAGCAGTTTAGTT  850

seq1  TTAAGCATTTAAGTCCTATGTTCTATTTATTTGGCCAATTTTCATAACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCATTTAAGTCCTATGTTCTATTTATTTGGCCAATTTTCATAACTA  900

seq1  TTGCAATAAACTTATTTTATCATCAAGCCTTGTAATAAAGTTACCTATTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TTGCAATAAACTTATTTTATCATCAAGCCTTGTAATAAAGTTACCTAT--  948

seq1  GGATTCCCTAATATTTCCCTTCATATTTTCACTGCTCTCTTAAAGACTAT  1000
       |||||||| ||||||||||||||| ||||||||||||||  ||||||||
seq2  AGATTCCCT-ATATTTCCCTTCATA-TTTCACTGCTCTCT--AAGACTAT  994

seq1  ATTCACAGTGTGTTGCAGAATGTGTTTTGAATATGTCCCAAGACTCTTAG  1050
      |||||||||||||||||| |||||||||||||||||||| |||||| |||
seq2  ATTCACAGTGTGTTGCAG-ATGTGTTTTGAATATGTCCC-AGACTCCTAG  1042

seq1  TTTGCTTTCAGTTCTAGTGCTCAGTTGGTAAAAACAGATACTTCTTTTAA  1100
      ||||| ||||||||||||||||  ||| |   ||||||||||||||||  
seq2  TTTGC-TTCAGTTCTAGTGCTCGTTTGTT---AACAGATACTTCTTTT--  1086

seq1  ACCTCTTATACATTGCCCATGTTTCTTTTATTGGGAGTTCTGGA  1144
      |||||||      || |   ||||||||||||||   |||||||
seq2  ACCTCTT----CCTGTC--AGTTTCTTTTATTGG--ATTCTGGA  1122