BAC Information

Click to search

BAC

Clone NameB6Ng01-154N14
ChromosomeX (Build37)
Map Location 99,211,348 - 99,352,833
singlet/doubletdoublet
Overlap geneRgag4, LOC100042480, LOC331476, Pin4, LOC670921, Ercc6l
Upstream geneTex11, LOC668271, LOC100042392, Slc7a3, Snx12, Mllt7, Gm614, Il2rg, Med12, Nlgn3, LOC100042407, Gjb1, Zmym3, Nono, Itgb1bp2, LOC620837, Taf1, Ogt, LOC620865, LOC668291, Cxcr3, LOC632454, LOC668302, EG212753, 8030474K03Rik, LOC668308, LOC100042465, H3f3a-ps1, EG621083
Downstream geneLOC668318, Rps4x, LOC100043080, Cited1, Hdac8, Phka1, LOC668331, LOC100042516, EG668339, Dmrtc1b, EG668343, LOC100043105, EG668349, EG382233, Dmrtc1c, EG668360, LOC668357, 1700031F05Rik, EG668369, Dmrtc1a, 1700011M02Rik, 1700018G05Rik, EG331480, EG668382, LOC668387, EG245545, LOC100042610
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154N14.bB6Ng01-154N14.g
ACCDH949783DH949784
length8751,071
definitionDH949783|Mus musculus domesticus DNA, BAC clone: B6Ng01-154N14, 5' end.DH949784|Mus musculus domesticus DNA, BAC clone: B6Ng01-154N14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,351,958 - 99,352,833)(99,211,348 - 99,212,431)
sequence
gaattccaagtatgttcagtgccaggcactggcggggaggaaaagggggc
aatggagacctctatgggccagtacaataagacagcctccactcacaagg
acaagagaaacaagcgcgcattttactcacgctcttaactccttcccttc
gctctcattactcaacattcacactcaccgccacgcagttaggacggaac
tgaaaccaccaccggtcacgtgaatcagcagccccccccccctccaaaaa
aaaaaaaaaaaaaacccaaaacgtaaggccactctagctaacgtagctag
ctagcgccagtgctcgagggcgcaggcgcaagaccttcctgggcggggct
caggaaaccgcgctcgagcgccagatcccggattggcccgccgcgaggcg
ggcagttggctctaccagtctagtgcgtgagcccagcctgggtaaggcgg
gagcgagcgaaattcaagcgcggttttaactgggagtctcctttcctggg
ctctccggattccctggccatggaggcttcccaaggcttagcggaagtgg
agactttgagcccacaactggccgagagttacctgaggtatgtttgggtc
tccggacgggtcgaacttgcagtccctggcctggggttgaggtggagtgg
ctcccacctccccctaggatctgctgtggcttttgaccagatttctattt
cggggagctcgccctgccaagtcactcgtaagtcaaataactcttgagta
tgaactctttaagagcctgaatttaattaactgatgaaatctttgagtct
ttctaactcgccaaccgccagacctgggagaaaagaggaaaatagtccct
aagttgttagcaattgggtagtgga
gaattcccctagctggacttagggacacagcctgtaatcccagcacttag
aaggatcatgaacttgaagtcagctttgactacataagacactatctggg
ggagaaaaaatgttctgtgatggttctcaacctggggagatttcaaactt
ctgaggggccccacccttcagaagtcttggtcttattgctctcatataaa
gcacagcctgcagggagtatggaaagggtagaccagcaggcttcacagaa
acaccttgaggtgtacctgacacacatctgcagtctggcctgcctctcta
cctgtggctgtagctttttcctctctagcaacagccagatttcctgagag
gtacacccaatcctcttccctctccttctttaacctgctgtagtgtggcc
tctacgctacaaaatccacctttgccaagctccttgcctcagtgctgctg
aagtgactatcaccagccaatgctactcttaaatgtagtcccttagtctt
tttttaacaatggctttttaaaaaccatgtgatagaaattggccctgaag
gtaggagccccagaaactgctgctcctgtgctgagttgaaaatcttaata
caggtgatttccacacacccaccccaaccctcaaactgcattcccatctc
agtgtccctggctgaaacagatgagaacccagcttatgctgggtctcctc
ccacactgtgggcaagaaacagtcatgcatctcctctgactagaaaatgg
ttagtggggtgcaggccaatccctggcccatactcatttcagcagtagag
ccatttagctatttagtactggggaacaaaagagtctatttgtaatcggc
tcctggcccacacgccttgttttgtgtccttgtcttctaagcgtacagaa
acaaatttgaacagttgtgtttcagtactttaaagccagtgactctttca
tgctttgtgcccgggaaatagtccttgctagatctgtgatctgatgtgtg
atggagtagaaccatgaagagttagcagtctctgatgccaccaagaagtg
gactggaatcagtccgttgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_99351958_99352833
seq2: B6Ng01-154N14.b_50_924 (reverse)

seq1  TTCACTACCCAATTGCTAACAACTTAGGGACTATTTTTCCTCTTTTCTCC  50
      | ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCCACTACCCAATTGCTAACAACTTAGGGACTA-TTTTCCTCTTTTCTCC  49

seq1  CAGGTCTGGCGGTTGGCGAGTTAGAAAGACTCAAAGATTTCATCAGTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTGGCGGTTGGCGAGTTAGAAAGACTCAAAGATTTCATCAGTTAA  99

seq1  TTAAAATTCAGGCTCTTAAAGAGTTCATACTCAAGAGTTATTTGACTTAC  150
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TT-AAATTCAGGCTCTTAAAGAGTTCATACTCAAGAGTTATTTGACTTAC  148

seq1  GAGTGACTTGGCAGGGCGAGCTCCCCGAAATAGAAATCTGGTC-AAAGCC  199
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAGTGACTTGGCAGGGCGAGCTCCCCGAAATAGAAATCTGGTCAAAAGCC  198

seq1  ACAGCAGATCCTAGGGGGAGGTGGGAGCCACTCCACCTCAACCCCAGGCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGATCCTAGGGGGAGGTGGGAGCCACTCCACCTCAACCCCAGGCC  248

seq1  AGGGACTGCAAGTTCGACCCGTCCGGAGACCCAAACATACCTCAGGTAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTGCAAGTTCGACCCGTCCGGAGACCCAAACATACCTCAGGTAAC  298

seq1  TCTCGGCCAGTTGTGGGCTCAAAGTCTCCACTTCCGCTAAGCCTTGGGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGGCCAGTTGTGGGCTCAAAGTCTCCACTTCCGCTAAGCCTTGGGAA  348

seq1  GCCTCCATGGCCAGGGAATCCGGAGAGCCCAGGAAAGGAGACTCCCAGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCATGGCCAGGGAATCCGGAGAGCCCAGGAAAGGAGACTCCCAGTT  398

seq1  AAAACCGCGCTTGAATTTCGCTCGCTCCCGCCTTACCCAGGCTGGGCTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCGCGCTTGAATTTCGCTCGCTCCCGCCTTACCCAGGCTGGGCTCA  448

seq1  CGCACTAGACTGGTAGAGCCAACTGCCCGCCTCGCGGCGGGCCAATCCGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACTAGACTGGTAGAGCCAACTGCCCGCCTCGCGGCGGGCCAATCCGG  498

seq1  GATCTGGCGCTCGAGCGCGGTTTCCTGAGCCCCGCCCAGGAAGGTCTTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGGCGCTCGAGCGCGGTTTCCTGAGCCCCGCCCAGGAAGGTCTTGC  548

seq1  GCCTGCGCCCTCGAGCACTGGCGCTAGCTAGCTACGTTAGCTAGAGTGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCGCCCTCGAGCACTGGCGCTAGCTAGCTACGTTAGCTAGAGTGGC  598

seq1  CTTACGTTTTGGGTTTTTTTTTTTTTTTTTTTGGAGGGGGGGGGGGCTGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACGTTTTGGGTTTTTTTTTTTTTTTTTTTGGAGGGGGGGGGGGCTGC  648

seq1  TGATTCACGTGACCGGTGGTGGTTTCAGTTCCGTCCTAACTGCGTGGCGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCACGTGACCGGTGGTGGTTTCAGTTCCGTCCTAACTGCGTGGCGG  698

seq1  TGAGTGTGAATGTTGAGTAATGAGAGCGAAGGGAAGGAGTTAAGAGCGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTGAATGTTGAGTAATGAGAGCGAAGGGAAGGAGTTAAGAGCGTG  748

seq1  AGTAAAATGCGCGCTTGTTTCTCTTGTCCTTGTGAGTGGAGGCTGTCTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAATGCGCGCTTGTTTCTCTTGTCCTTGTGAGTGGAGGCTGTCTTA  798

seq1  TTGTACTGGCCCATAGAGGTCTCCATTGCCCCCTTTTCCTCCCCGCCAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTGGCCCATAGAGGTCTCCATTGCCCCCTTTTCCTCCCCGCCAGT  848

seq1  GCCTGGCACTGAACATACTTGGAATTC  876
      |||||||||||||||||||||||||||
seq2  GCCTGGCACTGAACATACTTGGAATTC  875

seq1: chrX_99211348_99212431
seq2: B6Ng01-154N14.g_67_1137

seq1  GAATTCCCCTAGCTGGACTTAGGGACACAGCCTGTAATCCCAGCACTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTAGCTGGACTTAGGGACACAGCCTGTAATCCCAGCACTTAG  50

seq1  AAGGATCATGAACTTGAAGTCAGCTTTGACTACATAAGACACTATCTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCATGAACTTGAAGTCAGCTTTGACTACATAAGACACTATCTGGG  100

seq1  GGAGAAAAAATGTTCTGTGATGGTTCTCAACCTGGGGAGATTTCAAACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAAAATGTTCTGTGATGGTTCTCAACCTGGGGAGATTTCAAACTT  150

seq1  CTGAGGGGCCCCACCCTTCAGAAGTCTTGGTCTTATTGCTCTCATATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGGCCCCACCCTTCAGAAGTCTTGGTCTTATTGCTCTCATATAAA  200

seq1  GCACAGCCTGCAGGGAGTATGGAAAGGGTAGACCAGCAGGCTTCACAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCCTGCAGGGAGTATGGAAAGGGTAGACCAGCAGGCTTCACAGAA  250

seq1  ACACCTTGAGGTGTACCTGACACACATCTGCAGTCTGGCCTGCCTCTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTGAGGTGTACCTGACACACATCTGCAGTCTGGCCTGCCTCTCTA  300

seq1  CCTGTGGCTGTAGCTTTTTCCTCTCTAGCAACAGCCAGATTTCCTGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGCTGTAGCTTTTTCCTCTCTAGCAACAGCCAGATTTCCTGAGAG  350

seq1  GTACACCCAATCCTCTTCCCTCTCCTTCTTTAACCTGCTGTAGTGTGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACCCAATCCTCTTCCCTCTCCTTCTTTAACCTGCTGTAGTGTGGCC  400

seq1  TCTACGCTACAAAATCCACCTTTGCCAAGCTCCTTGCCTCAGTGCTGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACGCTACAAAATCCACCTTTGCCAAGCTCCTTGCCTCAGTGCTGCTG  450

seq1  AAGTGACTATCACCAGCCAATGCTACTCTTAAATGTAGTCCCTTAGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACTATCACCAGCCAATGCTACTCTTAAATGTAGTCCCTTAGTCTT  500

seq1  TTTTTAACAATGGCTTTTTAAAAACCATGTGATAGAAATTGGCCCTGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAACAATGGCTTTTTAAAAACCATGTGATAGAAATTGGCCCTGAAG  550

seq1  GTAGGAGCCCCAGAAACTGCTGCTCCTGTGCTGAGTTGAAAATCTTAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAGCCCCAGAAACTGCTGCTCCTGTGCTGAGTTGAAAATCTTAATA  600

seq1  CAGGTGATTTCCACACACCCACCCCAACCCTCAAACTGCATTCCCATCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGATTTCCACACACCCACCCCAACCCTCAAACTGCATTCCCATCTC  650

seq1  AGTGTCCCTGGCTGAAACAGATGAGAACCCAGCTTATGCTGGGTCTCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCCTGGCTGAAACAGATGAGAACCCAGCTTATGCTGGGTCTCCTC  700

seq1  CCACACTGTGGGCAAGAAACAGTCATGCATCTCCTCTGACTAGAAAATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTGTGGGCAAGAAACAGTCATGCATCTCCTCTGACTAGAAAATGG  750

seq1  TTAGTGGGGTGCAGGCCAATCCCTGGCCCATACTCATTTCAGCAGTAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGGGTGCAGGCCAATCCCTGGCCCATACTCATTTCAGCAGTAGAG  800

seq1  CCATTTAGCTATTTAGTACTGGGGAACAAAAGAGTCTATTTGTAATCGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAGCTATTTAGTACTGGGGAACAAAAGAGTCTATTTGTAATCGGC  850

seq1  TCCTGGCCCACACGCCTTGTTTTTGTGTCCTTGTCTTCTAAGCGTACAGA  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCCTGGCCCACACGCCTTG-TTTTGTGTCCTTGTCTTCTAAGCGTACAGA  899

seq1  AACAAATTTGAACAAGTTGTGTTTTCAGTACTTTAAAGCCAGTGACTCTT  950
      ||||||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  AACAAATTTGAAC-AGTTGTG-TTTCAGTACTTTAAAGCCAGTGACTCTT  947

seq1  TCATGCTTTGTGCCCCGGGAAATAGTCCTTGCTAGAATCTGTGATCTGAT  1000
      |||||||||||| |||||||||||||||||||||| ||||||||||||||
seq2  TCATGCTTTGTG-CCCGGGAAATAGTCCTTGCTAG-ATCTGTGATCTGAT  995

seq1  GTGTGATGGAGGTAGAACCAATGAAGAAGGTTAGCAGTCTCCTGATGCCA  1050
      |||||||||| |||||||| |||||||  ||||||||||| |||||||||
seq2  GTGTGATGGA-GTAGAACC-ATGAAGA--GTTAGCAGTCT-CTGATGCCA  1040

seq1  CAGAGAGTGGGACTGGATTCCAAGTCCCGTTGTC  1084
      |  |||   |||||||| ||  ||| ||||||||
seq2  CCAAGAAGTGGACTGGAATC--AGT-CCGTTGTC  1071