BAC Information

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BAC

Clone NameB6Ng01-159H21
Chromosome18 (Build37)X (Build37)
Map Location 60,748,609 - 60,748,741162,725,614 - 162,726,684
singlet/doubletsingletsinglet
Overlap geneMyoz3
Upstream geneLOC667549, EG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22
Downstream geneSynpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159H21.bB6Ng01-159H21.g
ACCDH953142DH953143
length4071,061
definitionDH953142|Mus musculus domesticus DNA, BAC clone: B6Ng01-159H21, 5' end.DH953143|Mus musculus domesticus DNA, BAC clone: B6Ng01-159H21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,748,609 - 60,748,741)(162,725,614 - 162,726,684)
sequence
actgtgtagatggaactggcctcaaactgttgattgtcttgcctctacct
cctctgaatgctggtatttacaaatgcataccacctcacttccttacttg
tggaggttaacttctcttaactaggaaactcatgacttctctgactatat
ttttagtcattaaattagtatatgtttttgttagtgttgtgttgctgtga
agaaatgtattttacatggggcttgcttaccgtttgagaggtttagtcca
ttgtcatggtgaggaggagcatgggaacatccaggcaggcattgtgctgg
agaagtagttgagaattctacagtaagatctgcaggcagtaggaagagag
agctcctgggcctggcttgggtgtttgcaaccataaagcccatcctcagt
gacacaa
gaattctaagatctactcctgggacagcaagctgactgtcccagtaggac
agtaggtaggtaaatgtgcttgctgccaagccagtcacacagcctgggtg
tgattccaggaactcatatggtaaaaggtgagagccaactgctttcttaa
agttgtcttctggcctccgcacttgtgcctaaaagcacacgcatgcacac
acatgtgatttttaaaagtataaagaacaactcctggcccagctccgccc
tcagggattctacattatttaaattctgtagatcagtggttttcaatctt
cctaacgttgtgacttctttaatacagttcctcatgttgtggtgactccc
aaccataaaattatttttgttgatactccataactgttattttgccatta
cgatgaatggtattgtgaacatctgctatacaggatatctgatatgcaag
cccaaaggggtcacgacccacaggtcgagaaccattgctcttgagcataa
cctgagcaaaagctggcttagaagtgcttcaggtcgggtctaggaatgga
gctggataactagctctatgttcagtcccccacaaaaacaggatgtgatg
gtgtgcgggatgtgatggtgtgcacctgtaaacccaagtagtgggaatca
ggaatttcaaggtcatccttggttacatagcaagtttaaaggcagtttag
ccaaatgataccctggaatgaaggaatgaggagaatcctgtaattttgtg
gactgagccataaaccatatattttcctggttctaatctgaaagcatcag
gttgccctctccactcaactacactcagtgtcttggcttgctagcactta
tgggctgaaatcacatggctttgtgctactgagtgttctcttcctcacaa
ttgtcactttttgacagtaaagaccaagactgctttgttgtcccagaatc
tctggtaccaagagcattcctggatgtagcactgcctcacaataatttgc
tgctggatgatctagtagtcttctgtaacctccttgggggagagaactca
cttacccatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_60748609_60748741
seq2: B6Ng01-159H21.b_320_457 (reverse)

seq1  TTGTGTCACTGCAGGTATGGGCTTAA----GACCCTCACCCTAGC---TG  43
      ||||||||||| ||| |||||||| |      |   ||||| |||     
seq2  TTGTGTCACTG-AGG-ATGGGCTTTATGGTTGCAAACACCCAAGCCAGGC  48

seq1  CCTGGAGGACAGTATTCTGCTAGCAGCCTTCAGATGAAGATGTAGAACTC  93
      || ||||  |  | |||  ||| | |||| |||||     ||||||| ||
seq2  CCAGGAGCTCTCTCTTC--CTA-CTGCCTGCAGATCTTACTGTAGAATTC  95

seq1  TCA---GGTCCTCCTGCACCATGCCTGCCTGGATGTTGCCATG  133
      |||     | |||| |||| ||||||||||||||||| |||||
seq2  TCAACTACTTCTCCAGCACAATGCCTGCCTGGATGTTCCCATG  138

seq1: chrX_162725614_162726684
seq2: B6Ng01-159H21.g_69_1129

seq1  GAATTCTAAGATCTACTCCTGGGACAGCAAGCTGACTGTCCCAGTAGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGATCTACTCCTGGGACAGCAAGCTGACTGTCCCAGTAGGAC  50

seq1  AGTAGGTAGGTAAATGTGCTTGCTGCCAAGCCAGTCACACAGCCTGGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTAGGTAAATGTGCTTGCTGCCAAGCCAGTCACACAGCCTGGGTG  100

seq1  TGATTCCAGGAACTCATATGGTAAAAGGTGAGAGCCAACTGCTTTCTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCAGGAACTCATATGGTAAAAGGTGAGAGCCAACTGCTTTCTTAA  150

seq1  AGTTGTCTTCTGGCCTCCGCACTTGTGCCTAAAAGCACACGCATGCACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCTTCTGGCCTCCGCACTTGTGCCTAAAAGCACACGCATGCACAC  200

seq1  ACATGTGATTTTTAAAAGTATAAAGAACAACTCCTGGCCCAGCTCCGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGATTTTTAAAAGTATAAAGAACAACTCCTGGCCCAGCTCCGCCC  250

seq1  TCAGGGATTCTACATTATTTAAATTCTGTAGATCAGTGGTTTTCAATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGATTCTACATTATTTAAATTCTGTAGATCAGTGGTTTTCAATCTT  300

seq1  CCTAACGTTGTGACTTCTTTAATACAGTTCCTCATGTTGTGGTGACTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACGTTGTGACTTCTTTAATACAGTTCCTCATGTTGTGGTGACTCCC  350

seq1  AACCATAAAATTATTTTTGTTGATACTCCATAACTGTTATTTTGCCATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATAAAATTATTTTTGTTGATACTCCATAACTGTTATTTTGCCATTA  400

seq1  CGATGAATGGTATTGTGAACATCTGCTATACAGGATATCTGATATGCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGAATGGTATTGTGAACATCTGCTATACAGGATATCTGATATGCAAG  450

seq1  CCCAAAGGGGTCACGACCCACAGGTCGAGAACCATTGCTCTTGAGCATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGGGGTCACGACCCACAGGTCGAGAACCATTGCTCTTGAGCATAA  500

seq1  CCTGAGCAAAAGCTGGCTTAGAAGTGCTTCAGGTCGGGTCTAGGAATGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCAAAAGCTGGCTTAGAAGTGCTTCAGGTCGGGTCTAGGAATGGA  550

seq1  GCTGGATAACTAGCTCTATGTTCAGTCCCCCACAAAAACAGGATGTGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATAACTAGCTCTATGTTCAGTCCCCCACAAAAACAGGATGTGATG  600

seq1  GTGTGCGGGATGTGATGGTGTGCACCTGTAAACCCAAGTAGTGGGAATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCGGGATGTGATGGTGTGCACCTGTAAACCCAAGTAGTGGGAATCA  650

seq1  GGAATTTCAAGGTCATCCTTGGTTACATAGCAAGTTTAAAGGCAGTTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTCAAGGTCATCCTTGGTTACATAGCAAGTTTAAAGGCAGTTTAG  700

seq1  CCAAATGATACCCTGGAATGAAGGAATGAGGAGAATCCTGTAATTTTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGATACCCTGGAATGAAGGAATGAGGAGAATCCTGTAATTTTGTG  750

seq1  GACTGAGCCATAAACCATATATTTTCCTGGTTCTAATCTGAAAGCATCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGCCATAAACCATATATTTTCCTGGTTCTAATCTGAAAGCATCAG  800

seq1  GTTGCCCTCTCCACTC-ACTACACTCAGTGTCTTGGCTTGCTAGCACTTA  849
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTTGCCCTCTCCACTCAACTACACTCAGTGTCTTGGCTTGCTAGCACTTA  850

seq1  TGGGCTGAAATCACATGGCTTTGTGCTACTGAGTGGTCCTCTTCCTCACC  899
      |||||||||||||||||||||||||||||||||| || ||||||||||| 
seq2  TGGGCTGAAATCACATGGCTTTGTGCTACTGAGT-GTTCTCTTCCTCAC-  898

seq1  AAATTGTCACTTTTTGACAGTAAAGACCAAGACTGCTTTGTTTGTCCCAG  949
       ||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  -AATTGTCACTTTTTGACAGTAAAGACCAAGACTGCTTTG-TTGTCCCAG  946

seq1  AATCTCTGGTACCCAGGAGCATTCCTGGGATGTAGCAACTGCCTCACAAA  999
      ||||||||||| ||| |||||||||| ||||||||| |||||||||||| 
seq2  AATCTCTGGTA-CCAAGAGCATTCCT-GGATGTAGC-ACTGCCTCACAAT  993

seq1  TATTTGCTGGCTGGATGAATCTAGTAGTACATCTGTTAACCTCCCT-GGG  1048
       ||||||| |||||||| |||||||||| | |||| |||||||| | |||
seq2  AATTTGCT-GCTGGATG-ATCTAGTAGT-CTTCTG-TAACCTCCTTGGGG  1039

seq1  GAGAGCAACTCACTTACCCATGC  1071
      ||||| |||||||||||||||||
seq2  GAGAG-AACTCACTTACCCATGC  1061