BAC Information

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BAC

Clone NameB6Ng01-159N13
Chromosome7 (Build37)X (Build37)
Map Location 74,452,293 - 74,453,39188,292,872 - 88,292,970
singlet/doubletsingletsinglet
Overlap geneMef2a
Upstream geneLrrk1, Aldh1a3, Asb7, Lins2, Lass3, Adamts17, Lysmd4
Downstream geneEG665304, Lrrc28, Ttc23, Dmn, LOC665319, LOC100041771, Igf1r, C330024D12Rik, EG434197
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159N13.bB6Ng01-159N13.g
ACCDH953391DH953392
length1,097252
definitionDH953391|Mus musculus domesticus DNA, BAC clone: B6Ng01-159N13, 5' end.DH953392|Mus musculus domesticus DNA, BAC clone: B6Ng01-159N13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(74,452,293 - 74,453,391)(88,292,872 - 88,292,970)
sequence
gaattcattgaaagcatattgttttagtgttgtatctgaatggctttact
ttctcacatgatggtgtggtagtgtttcctgactttggcttagtgctggg
cttttgtgatctgactcattccatcagttcagttatcatactcatagcaa
actccacatgtgtgctgtctagttcttactgttcggatggcaatcgtatg
tacttgtgaagatacttccttaaaagtgggcaagtaacatttctgtgata
ggtatcatttagagagttgctggttcagctttatgatacttcctttctgt
tttgacaaggtgaaaagcaacctttttctgtgtgtagtttgccagttgtc
tgctatgttactggtttttttgtttgtttgtttgcttttttcttagaagt
tctctgtggtctgagttttaactctctgtgtggtatctgtattgttaagc
tgtggccagtctcctttattctttgtccttgttcccccactgtgttctgt
tttcttgttattcctaaaatttatctgtaaacaaatataccaactgttga
gaaaatttaaatacatagttttaaaagttattcattagtatgcatgttta
tatttgtgtgtgtgaaaatgatggcatgtgcaggatagttcacacatgga
attcaggagacaacttttagaaattctctccttccattgttgtatcttgg
ggttgaatttagtaatctggtttgcttgtgggcccaagatgttgagattt
gtgtgtgtgtgtgtgtttcatatttagaagaaaacaaaagtatctttaaa
aaactaaaatatctttaagatagatattgacagatattacataaaaagtg
gtttggatatatggcacaatttacataatcagtctttcaaacagtatatt
gtattagctactttaatttttagttaagtagaagttcattggccatagga
tatttaaatgatcatagattatgcttcttgtattgggaaaataagacttt
aaaatgactttgagaactatctcaaattcttttctgtagaagaaaaatac
ttatttttagatgtggtagctatttaatgctttacgaagaaagaaag
ctgttcctgcttggggctctgtggaggaggggtgtgcagcatggtctcct
tccaagcattagggagccagaacaggccatctttcagcaggtagcccaaa
taacttttctctggcagatttggaccttcttggccaaggctctgtatccc
agtcctcccagctcctccaagatgcatttggtcccctctagacagtcctc
ctttcgtcttgggtcccaggtttcttcacagacaggaggggagtattcca
ag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_74452293_74453391
seq2: B6Ng01-159N13.b_44_1140 (reverse)

seq1  CTTTCTTTCT--GTAATGCATTTAAATAGCTA-CACATCTAAAAATAAGT  47
      ||||||||||  |||| ||| ||||||||||| |||||||||||||||||
seq2  CTTTCTTTCTTCGTAAAGCA-TTAAATAGCTACCACATCTAAAAATAAGT  49

seq1  ATTTTTCTCTTAACAGAAAAGAATTTGAGATAG-TCTCAAAGTCATTTTA  96
      |||||||| |  ||||||||||||||||||||| ||||||||||||||||
seq2  ATTTTTCT-TCTACAGAAAAGAATTTGAGATAGTTCTCAAAGTCATTTTA  98

seq1  TAGTCTTATGTTTCCCAAATACAGGAAGCATAATCTATGATCATTTAAAT  146
       |||||||| |||||| |||||| ||||||||||||||||||||||||||
seq2  AAGTCTTAT-TTTCCC-AATACAAGAAGCATAATCTATGATCATTTAAAT  146

seq1  ATCCTATTGGCCAATGAACTTCTACTTAACTAAAAAATTAAAGTAGCTAA  196
      |||||| |||||||||||||||||||||||| ||||||||||||||||||
seq2  ATCCTA-TGGCCAATGAACTTCTACTTAACT-AAAAATTAAAGTAGCTAA  194

seq1  TACAATATACTGTTTGAAAGACTGATTATGTAAATTGTGCCATATATCCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATATACTGTTTGAAAGACTGATTATGTAAATTGTGCCATATATCCA  244

seq1  AACCACTTTTTATGTAATATCTGTCAATATCTATCTTAAAGATATTTTAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTTTTTATGTAATATCTGTCAATATCTATCTTAAAGATATTTTAG  294

seq1  TTTTTTAAAGATACTTTTGTTTTCTTCTAAATATGAAACACACACACACA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAGATACTTTTGTTTTCTTCTAAATATGAAACACACACACACA  344

seq1  CACAAATCTCAACATCTTGGGCCCACAAGCAAACCAGATTACTAAATTCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATCTCAACATCTTGGGCCCACAAGCAAACCAGATTACTAAATTCA  394

seq1  ACCCCAAGATACAACAATGGAAGGAGAGAATTTCTAAAAGTTGTCTCCTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAGATACAACAATGGAAGGAGAGAATTTCTAAAAGTTGTCTCCTG  444

seq1  AATTCCATGTGTGAACTATCCTGCACATGCCATCATTTTCACACACACAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCATGTGTGAACTATCCTGCACATGCCATCATTTTCACACACACAA  494

seq1  ATATAAACATGCATACTAATGAATAACTTTTAAAACTATGTATTTAAATT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAACATGCATACTAATGAATAACTTTTAAAACTATGTATTTAAATT  544

seq1  TTCTCAACAGTTGGTATATTTGTTTACAGATAAATTTTAGGAATAACAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAACAGTTGGTATATTTGTTTACAGATAAATTTTAGGAATAACAAG  594

seq1  AAAACAGAACACAGTGGGGGAACAAGGACAAAGAATAAAGGAGACTGGCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGAACACAGTGGGGGAACAAGGACAAAGAATAAAGGAGACTGGCC  644

seq1  ACAGCTTAACAATACAGATACCACACAGAGAGTTAAAACTCAGACCACAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTAACAATACAGATACCACACAGAGAGTTAAAACTCAGACCACAG  694

seq1  AGAACTTCTAAGAAAAAAGCAAACAAACAAACAAAAAAACCAGTAACATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTCTAAGAAAAAAGCAAACAAACAAACAAAAAAACCAGTAACATA  744

seq1  GCAGACAACTGGCAAACTACACACAGAAAAAGGTTGCTTTTCACCTTGTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAACTGGCAAACTACACACAGAAAAAGGTTGCTTTTCACCTTGTC  794

seq1  AAAACAGAAAGGAAGTATCATAAAGCTGAACCAGCAACTCTCTAAATGAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGAAAGGAAGTATCATAAAGCTGAACCAGCAACTCTCTAAATGAT  844

seq1  ACCTATCACAGAAATGTTACTTGCCCACTTTTAAGGAAGTATCTTCACAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATCACAGAAATGTTACTTGCCCACTTTTAAGGAAGTATCTTCACAA  894

seq1  GTACATACGATTGCCATCCGAACAGTAAGAACTAGACAGCACACATGTGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATACGATTGCCATCCGAACAGTAAGAACTAGACAGCACACATGTGG  944

seq1  AGTTTGCTATGAGTATGATAACTGAACTGATGGAATGAGTCAGATCACAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCTATGAGTATGATAACTGAACTGATGGAATGAGTCAGATCACAA  994

seq1  AAGCCCAGCACTAAGCCAAAGTCAGGAAACACTACCACACCATCATGTGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAGCACTAAGCCAAAGTCAGGAAACACTACCACACCATCATGTGA  1044

seq1  GAAAGTAAAGCCATTCAGATACAACACTAAAACAATATGCTTTCAATGAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAAAGCCATTCAGATACAACACTAAAACAATATGCTTTCAATGAA  1094

seq1  TTC  1099
      |||
seq2  TTC  1097

seq1: chrX_88292872_88292970
seq2: B6Ng01-159N13.g_224_326

seq1  CAGTCCTCCCAGCTCCCCCAAGAGGCATTTATTCCCCTCTAGACAGTCCT  50
      |||||||||||||||| |||||| ||||||  ||||||||||||||||||
seq2  CAGTCCTCCCAGCTCCTCCAAGATGCATTTGGTCCCCTCTAGACAGTCCT  50

seq1  C----AGTCTTGGGCCCCAGGTTTCTTCACAGTCAGGAGGGGAGTATTCC  96
      |     |||||||| ||||||||||||||||| |||||||||||||||||
seq2  CCTTTCGTCTTGGGTCCCAGGTTTCTTCACAGACAGGAGGGGAGTATTCC  100

seq1  AAG  99
      |||
seq2  AAG  103