BAC Information

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BAC

Clone NameB6Ng01-161G22
ChromosomeX (Build37)
Map Location 9,240,503 - 9,241,653
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668977, LOC631002, Ssx9, Ssxb5, LOC625480, EG436188, B630019K06Rik, LOC100009698, LOC436189, LOC673817, LOC331380, EG434726, LOC100043940, EG434727, LOC436190, LOC100042782, EG668980, Fthl17, LOC100043942, EG434728, LOC100043943, LOC385316, EG434729, LOC100043944, LOC628008, 4930402K13Rik, EG436193, Lancl3, Xk, 1700012L04Rik, EG628040, LOC100042834, LOC100042839, Rp23-423l11.5, Cybb, EG333452, LOC100042867, Dynlt3
Downstream gene1700054O13Rik, 4930557A04Rik, Sytl5, LOC436194, Srpx, Rpgr, Otc, 4933416E14Rik, Tspan7, EG546265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161G22.bB6Ng01-161G22.g
ACCDH954545DH954546
length1,1431,159
definitionDH954545|Mus musculus domesticus DNA, BAC clone: B6Ng01-161G22, 5' end.DH954546|Mus musculus domesticus DNA, BAC clone: B6Ng01-161G22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactatttgcaataaaggtaaaacactaactataggttttttttc
cggtctgttctgtaaaagggaaaaatcatatgggtaagacatgacaaatt
gtgcctgaggaaaagactcctggagactagacagatattgctgatgtgat
gaagacaataccgtctaaagacagaaagcacacataccctaaaaaggttt
tgagcaactaaatcaatcaggaatataaattgactctcacattcctggtt
ataaaacaaaacataaacatcattatttcagttcctcctacttgggtctt
ttgttacttgtagccaaaggaacatattaataaaattacaatgatttaaa
gtaaattctcaaaactatttggtatttttccagttgaaagatcattgaag
tttgcgtatggaatgtatggagtgtttccttgaatgtatgtgcatcatat
gtgcttagagcctgaagaggccagaaaaaggggttgggcccccttgaacc
agagatacagacagcctataggcaatacatgggtactgagtaccaaacct
aggtcctctgcaagagtagtgagtgctaacttcttagccatctccccagc
cccaatcactttgctttttgcaatgacccataatagaagagccagtactg
caaaaatcacagtatcaaggttgattcaatagtcacaaattgagagtggt
gaattgggggacctgaggatttagttactgtctatataggctttcaagtt
acttcatgtctcttaattcctgttctacttttaaagtaatagaaagggat
tagaaaactaaggaaccttctgactttgatagtggggaacaaaatagaag
tcattgtgttgggctgaatatccccaccacatcaccagacatatccacat
tgaatcccagtacacggcaatgccctaccttgcatggcaaaaacattttg
tacatgtggtagagctatacaggagaggtggtggtgctttgaagctgtag
gaataataggtagtactacaagtgaagaggacatcactttaggagttgtg
tgtacggtatctttatttgatctttataaccaagtctcataaagggatta
tggtatagggaaactgaatctctggtgtgtgttgtgtgggggc
gaattcactcaaaaaatgaaaagagaactaacttctggatgatccataaa
tccctactcctggttacatgcccaaaggaaataaaatccgtatgttaagt
ggtatctgcttaccctggcttaaggcagcactattcaaaagagacaaaaa
tgaggggcagggagaaacaacatgaatgtctgctaactgataaacataca
tatctatgtgtactggctagttttttgtcaacttgacacagctggggtta
tcacaaagaaaggagcttcagttgaggaaatgcctccatgagatccaact
gtaaggcattttctcaatcagtgatcaagggggaaaggccccttgtgggt
gggaccatctctgggctggtagtcttgggttctataagagagcaggctga
gcaagccaggggaggcaagctagtaaggaacatccctccatggcctctgc
atcagctcctgcttcctgacctgcttgagttccagacctgacttgctttg
gtgatgaacagcagcatggaaatgtaagccgaataaaccctttcctcccc
aacttgcttcttggtcatgatgtttgtgcaggaatagagaccctgactaa
gacaaattggtaccagcagagtggggtattcctgtgacaacctgaccatg
ttttggggaggactgtggaaggactttggaactttgggcttgaagatcca
tccgttgttaagagctctgtcggatgttgtgtaggagcttggaagataat
gttgagaacactgcagaagatggaggtcttgtttgtgaaatttcagaggg
aagattaaagacttttcagggccattgctgttttgattgggaagattctg
tggttctggttagctggggctgaagaatcagctgtgattaacagatacca
gaactaccaaagcaaaactttgcattactgggactatgatgctggttagc
tgagctaagaaattagtgggtgattagagagaccagcatcatgaggtgac
atcttctgggagtggttttctggaagcacaaagaggctgtgtcaaagatg
ccaaggttgatctctgctgcacgacttggtataatgtaaggtcactcagt
ggtactctggttgagagcataaaggtccagcaaacagcctgtgaggctcg
caccgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_9240503_9241653
seq2: B6Ng01-161G22.b_48_1189 (reverse)

seq1  CCCCCACAC-ACACACACACAAGATTCAGTTTTCCCATAACATAAATCCC  49
      ||||||||| ||||||||   ||||||||||| || ||| ||| ||||||
seq2  CCCCCACACAACACACACCAGAGATTCAGTTTCCCTATACCAT-AATCCC  49

seq1  TCTATTTGGAGAC-TCGTTATAAGGATCAAAT-AAGATACAGTACACACA  97
      | |||   ||||| | ||||||| |||||||| ||||||| |||||||||
seq2  TTTAT---GAGACTTGGTTATAAAGATCAAATAAAGATACCGTACACACA  96

seq1  ACTCCTAAAGTTGATGTCCCTCTTCAACTTGTAGTAACTACCTA-TATTC  146
      |||||||||| |||||| ||||||| ||||||||| |||||||| |||||
seq2  ACTCCTAAAG-TGATGT-CCTCTTC-ACTTGTAGT-ACTACCTATTATTC  142

seq1  CTACAGCTTCAAAGCCACCACCACCTCTCCTGTATTAGCTCTAACCACAT  196
      |||||||||||||| ||||||||||||||||||| ||||||| |||||||
seq2  CTACAGCTTCAAAG-CACCACCACCTCTCCTGTA-TAGCTCT-ACCACAT  189

seq1  GTACAAAATGTTTTTTGCCATGCAAGGTAGGGCATTGCCGTGTACTGGGA  246
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAATG-TTTTTGCCATGCAAGGTAGGGCATTGCCGTGTACTGGGA  238

seq1  TTCAAATGTGGATATGTCTGGTGATGGTGGTGGGGATATTCAGCCCAACA  296
      ||| ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTC-AATGTGGATATGTCTGGTGAT-GTGGTGGGGATATTCAGCCCAACA  286

seq1  CAATGACTTCTATTTTGTTCCCCACTATCAAAGTCAGAAGGTTCCTTAGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACTTCTATTTTGTTCCCCACTATCAAAGTCAGAAGGTTCCTTAGT  336

seq1  TTTCTAATCCCTTTCTATTACTTTAAAAGTAGAACAGGAATTAAGAGACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATCCCTTTCTATTACTTTAAAAGTAGAACAGGAATTAAGAGACA  386

seq1  TGAAGTAACTTG-AAGCCTATATAGACAGTAACTAAATCCTCAGGTCCCC  445
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAACTTGAAAGCCTATATAGACAGTAACTAAATCCTCAGGTCCCC  436

seq1  CAATTCACCACTCTCAATTTGTGACTATTGAATCAACCTTGATACTGTGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCACCACTCTCAATTTGTGACTATTGAATCAACCTTGATACTGTGA  486

seq1  TTTTTGCAGTACTGGCTCTTCTATTATGGGTCATTGCAAAAAGCAAAGTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCAGTACTGGCTCTTCTATTATGGGTCATTGCAAAAAGCAAAGTG  536

seq1  ATTGGGGCTGGGGAGATGGCTAAGAAGTTAGCACTCACTACTCTTGCAGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGCTGGGGAGATGGCTAAGAAGTTAGCACTCACTACTCTTGCAGA  586

seq1  GGACCTAGGTTTGGTACTCAGTACCCATGTATTGCCTATAGGCTGTCTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTAGGTTTGGTACTCAGTACCCATGTATTGCCTATAGGCTGTCTGT  636

seq1  ATCTCTGGTTCAAGGGGGCCCAACCCCTTTTTCTGGCCTCTTCAGGCTCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGGTTCAAGGGGGCCCAACCCCTTTTTCTGGCCTCTTCAGGCTCT  686

seq1  AAGCACATATGATGCACATACATTCAAGGAAACACTCCATACATTCCATA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACATATGATGCACATACATTCAAGGAAACACTCCATACATTCCATA  736

seq1  CGCAAACTTCAATGATCTTTCAACTGGAAAAATACCAAATAGTTTTGAGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAACTTCAATGATCTTTCAACTGGAAAAATACCAAATAGTTTTGAGA  786

seq1  ATTTACTTTAAATCATTGTAATTTTATTAATATGTTCCTTTGGCTACAAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTTAAATCATTGTAATTTTATTAATATGTTCCTTTGGCTACAAG  836

seq1  TAACAAAAGACCCAAGTAGGAGGAACTGAAATAATGATGTTTATGTTTTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAAGACCCAAGTAGGAGGAACTGAAATAATGATGTTTATGTTTTG  886

seq1  TTTTATAACCAGGAATGTGAGAGTCAATTTATATTCCTGATTGATTTAGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAACCAGGAATGTGAGAGTCAATTTATATTCCTGATTGATTTAGT  936

seq1  TGCTCAAAACCTTTTTAGGGTATGTGTGCTTTCTGTCTTTAGACGGTATT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAAAACCTTTTTAGGGTATGTGTGCTTTCTGTCTTTAGACGGTATT  986

seq1  GTCTTCATCACATCAGCAATATCTGTCTAGTCTCCAGGAGTCTTTTCCTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCATCACATCAGCAATATCTGTCTAGTCTCCAGGAGTCTTTTCCTC  1036

seq1  AGGCACAATTTGTCATGTCTTACCCATATGATTTTTCCCTTTTACAGAAC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAATTTGTCATGTCTTACCCATATGATTTTTCCCTTTTACAGAAC  1086

seq1  AGACCGGAAAAAAAACCTATAGTTAGTGTTTTACCTTTATTGCAAATAGT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCGGAAAAAAAACCTATAGTTAGTGTTTTACCTTTATTGCAAATAGT  1136

seq1  GAATTC  1151
      ||||||
seq2  GAATTC  1142