BAC Information

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BAC

Clone NameB6Ng01-161O04
ChromosomeX (Build37)
Map Location 8,093,167 - 8,094,259
singlet/doubletsinglet
Overlap geneLOC546263
Upstream geneLOC668973, Ppp1r3f, 4930524L23Rik, Foxp3, Ccdc22, Cacna1f, Syp, LOC632264, Lmo6, Plp2, Pdzx, Ppia-psx_14.1, Gpkow, LOC100043938, Wdr45, Praf2, Ccdc120, EG236622, Tcfe3, Gripap1, LOC100043939, Kcnd1, Otud5, Pim2, Slc35a2, Pqbp1, Timm17b, Pcsk1n, Eras, Hdac6, LOC668974, Gata1, Glod5, LOC668975, EG627737, EG632013, Suv39h1, Was, EG627782, Wdr13, Rbm3, Tbc1d25, Ebp, Porcn, Ftsj1, Slc38a5, Ssxb10, Ssxb9, Ssxb1, Ssxb2
Downstream geneSsxb6, Ssxb3, EG627853, EG627857, LOC668977, LOC631002, Ssx9, Ssxb5, LOC625480, EG436188, B630019K06Rik, LOC100009698, LOC436189, LOC673817, LOC331380, EG434726, LOC100043940, EG434727, LOC436190, LOC100042782, EG668980, Fthl17, LOC100043942, EG434728, LOC100043943, LOC385316, EG434729, LOC100043944, LOC628008, 4930402K13Rik, EG436193, Lancl3, Xk, 1700012L04Rik, EG628040, LOC100042834, LOC100042839, Rp23-423l11.5, Cybb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161O04.bB6Ng01-161O04.g
ACCDH954875DH954876
length1,105764
definitionDH954875|Mus musculus domesticus DNA, BAC clone: B6Ng01-161O04, 5' end.DH954876|Mus musculus domesticus DNA, BAC clone: B6Ng01-161O04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccactcagtccatgccagagtgctggcaggcttgatcttgtgca
ggtctcataggggcaaagacacctactgtgtgttcatgagtctaataacc
atgtcatgtccctcaaacactacattgctctggtgtgaatgaatgtcttc
tgcttcttcaaatctctcgatccccctcttctgttatggaacttgagctt
gggaggagagtgtgtgacatgtttgatgttttgtgggcaattcatagaca
cttactttgtgcagtctaaccagatgggagtttctgcagtagccaccaat
cactgtacttaaaaacttctctgatgctgtctgagagctcctttccctat
gggtagagacttatgagtttagaagagagtttgtaatacattcatttagc
aaaattatagtaacaggtttcccaggggtcctgaataactacagtttctt
ggtcagagttacagtacaggacctgtgtttcttcaattagagcattttag
tacttacagttctgataatgaggattgcctcaactgtgctagattattga
cccaaaaagcagttccactcgctttctgacctgtagcccaacccactgaa
gtgtagtcaagtcttccttagtttctgaaggccaggtgatgctcctgtca
gtattctctcacataacttgcacgttctttcatcctgacactcaatttcc
acatagggatttccagctggcctatgctctgtgaagggtccatgctctgt
tctggctacaaatgacagggctttcatgggtagaccccttccactgtgat
caagttcagacatatctatacctgagaactgtctgcccccacagccccaa
gacagaggaccaataggaggcccctggactatgtaatgtgggttttccac
agcttcggggtccagttgtagtatagaaagatttctgggagctgaggtag
tgaccagtggaggacccaagcttaggactgacttgtgtgaacggagtgat
cctgataattgcatttgtaaggtgctactatatctgaacctctcaggttc
agagtatctgaacggaatggtttctttccacaggcatacctcacattata
tgttc
gaattctcagtagaaaaactacaaacagctgagaaacacttaaagaaatg
ttcaacatccttagccagtagggaaatgcaaatcaaaaccatgaagttcc
atcttacacttgtcagaatggctaagatcaacaaaataagtgacagttca
tggaataagaagaggaaaacctatccattgctggtgggagtgcaaacatg
tacattcactataaaatcagtgtgacagttcctcaggaaggtgggtgttg
acctagttcaaagtccagctatactactcttgagtatttatctaaaggat
gcttcatcctatcataaggacctttactcaaccatgttaattgctgttgt
attcataatagcaagaacttggaaacaaaccagatgttgttcaacagaag
aatggataaaggaaatatggtacatttacacaatggggaattactcagct
cttaaaaatgatatcataaaatttgcagtcaaatggacagaacttaggaa
tacatgaatgaggtattgcagatccagaaagacaaatatggtatatattc
acttgtatgtgtatattagctgtgaagttaatgatacctaaggaacacag
actatagtagtattaacagtattatagtagttgtactataagggaccaga
ggggacagatgcttctcattagaaaagggagacagaataaataattactg
atagatatgtagagctagaatggaagaatcaagagggagggagaggggat
aggagagagtgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_8093167_8094259
seq2: B6Ng01-161O04.b_50_1154 (reverse)

seq1  GAACATAT-ATGTG-GGTATGCCTGTGG--AGGAAACACTCTG-TCAGAT  45
      |||||||| ||||| |||||||||||||  || || || || | ||||||
seq2  GAACATATAATGTGAGGTATGCCTGTGGAAAGAAACCATTCCGTTCAGAT  50

seq1  ACTCTGGAACTG-GAGTGTCAGATAATAGTAAGCACC-TACAAATGC-AC  92
      |||||| | ||| |||  |||||| ||||| |||||| ||||||||| | 
seq2  ACTCTGAACCTGAGAGGTTCAGAT-ATAGT-AGCACCTTACAAATGCAAT  98

seq1  TATCAGGATCACTCCGTTCACAC-AGTCAGTCCTTAGC-TGGGTCCT-CA  139
      ||||||||||||||||||||||| |||||||||| ||| |||||||| ||
seq2  TATCAGGATCACTCCGTTCACACAAGTCAGTCCTAAGCTTGGGTCCTCCA  148

seq1  CTGGTCACTAACCTCAGCTCCCAGAAATCTTTCTATACTAC-ACTGGACC  188
      ||||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  CTGGTCACT-ACCTCAGCTCCCAGAAATCTTTCTATACTACAACTGGACC  197

seq1  CCGAAGCTGTGG-AAACCCACATTACATAGT-CAGGGGCCTCCTATTGGT  236
      |||||||||||| |||||||||||||||||| ||||||||||||||||||
seq2  CCGAAGCTGTGGAAAACCCACATTACATAGTCCAGGGGCCTCCTATTGGT  247

seq1  CCTCTGTCTTGGGGCTGT-GGGGCAGACAGTTCTCAGGTATAGATATGTC  285
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  CCTCTGTCTTGGGGCTGTGGGGGCAGACAGTTCTCAGGTATAGATATGT-  296

seq1  CTGAACTTGATCACAGTGGAAGGGGTCTA-CCATGAAAGCCCTGTCATTT  334
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTGAACTTGATCACAGTGGAAGGGGTCTACCCATGAAAGCCCTGTCATTT  346

seq1  GTAGCCAGAACAGAGCATGGACCCTTCACAGAGCATAGGCCAGCTGGAAA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCAGAACAGAGCATGGACCCTTCACAGAGCATAGGCCAGCTGGAAA  396

seq1  TCCCTATGTGGAAATTGAGTGTCAGGATGAAAGAACGTGCAAGTTATGTG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATGTGGAAATTGAGTGTCAGGATGAAAGAACGTGCAAGTTATGTG  446

seq1  AGAGAATACTGACAGGAGCATCACCTGGCCTTCAGAAACTAAGGAAGACT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATACTGACAGGAGCATCACCTGGCCTTCAGAAACTAAGGAAGACT  496

seq1  TGACTACACTTCAGTGGGTTGGGCTACAGGTCAGAAAGCGAGTGGAACTG  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTACACTTCAGTGGGTTGGGCTACAGGTCAGAAAGCGAGTGGAACTG  546

seq1  CTTTTTGGGTCAATAATCTAGCACAGTTGAGGCAATCCTCATTATCAGAA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGGGTCAATAATCTAGCACAGTTGAGGCAATCCTCATTATCAGAA  596

seq1  CTGTAAGTACTAAAATGCTCTAATTGAAGAAACACAGGTCCTGTACTGTA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGTACTAAAATGCTCTAATTGAAGAAACACAGGTCCTGTACTGTA  646

seq1  ACTCTGACCAAGAAACTGTAGTTATTCAGGACCCCTGGGAAACCTGTTAC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGACCAAGAAACTGTAGTTATTCAGGACCCCTGGGAAACCTGTTAC  696

seq1  TATAATTTTGCTAAATGAATGTATTACAAACTCTCTTCTAAACTCATAAG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTTGCTAAATGAATGTATTACAAACTCTCTTCTAAACTCATAAG  746

seq1  TCTCTACCCATAGGGAAAGGAGCTCTCAGACAGCATCAGAGAAGTTTTTA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACCCATAGGGAAAGGAGCTCTCAGACAGCATCAGAGAAGTTTTTA  796

seq1  AGTACAGTGATTGGTGGCTACTGCAGAAACTCCCATCTGGTTAGACTGCA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGTGATTGGTGGCTACTGCAGAAACTCCCATCTGGTTAGACTGCA  846

seq1  CAAAGTAAGTGTCTATGAATTGCCCACAAAACATCAAACATGTCACACAC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAAGTGTCTATGAATTGCCCACAAAACATCAAACATGTCACACAC  896

seq1  TCTCCTCCCAAGCTCAAGTTCCATAACAGAAGAGGGGGATCGAGAGATTT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCCCAAGCTCAAGTTCCATAACAGAAGAGGGGGATCGAGAGATTT  946

seq1  GAAGAAGCAGAAGACATTCATTCACACCAGAGCAATGTAGTGTTTGAGGG  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGCAGAAGACATTCATTCACACCAGAGCAATGTAGTGTTTGAGGG  996

seq1  ACATGACATGGTTATTAGACTCATGAACACACAGTAGGTGTCTTTGCCCC  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACATGGTTATTAGACTCATGAACACACAGTAGGTGTCTTTGCCCC  1046

seq1  TATGAGACCTGCACAAGATCAAGCCTGCCAGCACTCTGGCATGGACTGAG  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGACCTGCACAAGATCAAGCCTGCCAGCACTCTGGCATGGACTGAG  1096

seq1  TGGGAATTC  1093
      |||||||||
seq2  TGGGAATTC  1105