This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Parameter
BAC name
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search by nearby gene name.
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Search Result
BAC
Clone Name
B6Ng01-162O19
Chromosome
X (Build37)
1 (Build37)
Map Location
63,698,576 - 63,699,760
106,023,946 - 106,024,178
singlet/doublet
singlet
singlet
Overlap gene
none
Upstream gene
LOC671840
Downstream gene
Slitrk2
,
LOC666824
,
LOC627734
,
EG666828
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC671840
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:671840
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins
pseudo
: _no_value
name
Slitrk2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:245450
MGI:2679449
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC666824
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:666824
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins
pseudo
: _no_value
name
LOC627734
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:627734
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins
pseudo
: _no_value
name
EG666828
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:666828
MGI:3643550
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins
pseudo
: _no_value
name
Slitrk2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:110350663
GeneID:245450
MGI:2679449
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: SLIT and NTRK-like family, member 2
transcript_id
: NM_198863.1
name
Slitrk2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:110350664
CCDS:CCDS30169.1
GeneID:245450
MGI:2679449
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0003674 - molecular_function [Evidence ND]; GO:0016740 - transferase activity [Evidence IEA]
GO_process
: GO:0007409 - axonogenesis [Evidence IDA]
codon_start
: 1
exception
: mismatches in translation
note
: slit and trk like gene 2
product
: SLIT and NTRK-like family, member 2
protein_id
: NP_942563.1
name
LOC671840
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:671840
definition
number
: 1
pseudo
: _no_value
name
LOC671840
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:671840
definition
number
: 2
pseudo
: _no_value
name
LOC671840
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:671840
definition
number
: 3
pseudo
: _no_value
name
LOC671840
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:671840
definition
number
: 4
pseudo
: _no_value
name
LOC666824
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666824
definition
number
: 1
pseudo
: _no_value
name
EG666828
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666828
definition
number
: 2
pseudo
: _no_value
name
EG666828
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666828
definition
number
: 1
pseudo
: _no_value
name
LOC627734
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149271665
GeneID:627734
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins
product
: similar to checkpoint suppressor 1
pseudo
: _no_value
transcript_id
: XR_031567.1
clone name
MSMg01-311H18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-290A12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-411O13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-483D21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-337H07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-506G18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-442P10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-059C09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-108M19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-450D13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-130O22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-428O06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-120H19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-173C21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-100G06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-264B15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-046O13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-125G20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-445K22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-393C06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-304F17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-047C19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-125E16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-123O01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-385G02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-303I09
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-400D15
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-494B07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-401J05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-428C18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-172O20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-518B10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-351P02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-515J12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-148P14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-306K12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-532A04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-097A11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-405C11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-515I02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-490H06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-452G23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-395K16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-055I19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-190B06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-074H24
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-444J05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-111K08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-074K19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-046G14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-099D18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-384H17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-524E02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-506B18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-517C17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-328J16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-359E21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-525D04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-276L13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-299M06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-372L05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-258A12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-288I23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-189B13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-266K04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-346H14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-210D20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-269D10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-202K02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-307L22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-248E22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-301G13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-062H22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-274D16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-141L18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-141J24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-256P03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-049F07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-325N20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-129P04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-086G13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-140I20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-039O18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-310G02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-248B18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-054I04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-081A04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-106C10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-211O18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-162O19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-318N22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-086G12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-300L07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-164H19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-183G08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-292A06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-048G08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-257L14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-029O18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-254F11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-258I11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-053D14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-087O05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-129K03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-159K05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-224P02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-306B04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-331N10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-231N03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-222A21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-315A10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-086B04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-020F02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-074B16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-039B07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-331F21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-308L22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-135O03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-025D14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-204E02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-294L03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-055I04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-015L23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-039E21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-285B22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-338B08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-018N14
singlet/doublet
singlet
plural/unique
unique
