BAC Information

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BAC

Clone NameB6Ng01-163P02
ChromosomeX (Build37)
Map Location 90,248,959 - 90,250,186
singlet/doubletsinglet
Overlap genenone
Upstream geneMageb1, EG236892, EG236893, Mageb18, EG436259, EG668061, EG546347, LOC629568
Downstream geneLOC100042663, Rp23-438h3.2, Arx, Pola1, EG629581, Pcyt1b, Pdk3, EG668103, LOC100042041, AU015836, EG245516, LOC100042062
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163P02.bB6Ng01-163P02.g
ACCDH956401DH956402
length1,2131,179
definitionDH956401|Mus musculus domesticus DNA, BAC clone: B6Ng01-163P02, 5' end.DH956402|Mus musculus domesticus DNA, BAC clone: B6Ng01-163P02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgatagagcaatagctcctctaaatgacagcaaaggcttgcagc
agggatgtgaggcacatctatttcagggcttcccattagtgcgaaagcag
ttcagtaagaaatgaagtcatttcctgactcattgggatgccatgtttaa
actgcagttttcagcctaaggatacaaaggttgaggaaatgtgggatgag
cctaaaagaggtgaatcatcccatgaggatgcgggaaatcatctcttttc
aggtccttcacacatgactagaagattttacatggaaacggggagctgac
taagagctctcatctatcttaacatgataagaaggctctccatcctacac
cttccattaaagcctgttccataaagaatctacttgtaagtgtcagagta
aaataaacagctcaacatgtaagaatccaaaacatcagattacagggaaa
agatgtacttgaattctgttaattgtctacgcctctgaaactatgttata
caggagctaaagagttggctgagcagttaagaatacttgctgctcttgta
ggagacccagtttcggttcccggcatcatgtggggtctcacaacctcctg
taatatcaattccaggctatctaacacactcttctggcctcagtgggcac
aaggccttcatgtagtacacagatataaatgcaggcaaaatattcatatg
cattttgaaagttaatttttagaaattttaaaagaatatgtttattggac
ttcagtattgttaagaacttcattacatacaatggtacagaaatatatac
attagtattccaaaagagaagaaagggggcatagtaaacaaataccagac
taaatcaagactgaaagtcagcaggacaaaccccaaatcctatagctcta
catctgatgccaaagggcttagatggctgttaatctagttttgttaacgg
caacatacttctctatcttgggttggtccactcgctctttcaagctttcc
ttggcagatattccattagctctgtccatctccaacatcctggatctaca
tgcaattcaggcttcacatttacagcttcaccatgactctcgtgccttct
gtgtcatggacctcccctgacactatgcttgtatcagtgttctccctcat
ctgagagaggaattccaaattcttcatctgtattctcctgcttaatcatg
acaggctgccaag
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaatatcaaaaatccaggtgacagc
agatgctggcgtaaatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
aaaaaatggacatagtactaccggaggatccagcaatacctctcctgggc
atatatctagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctagaaagaacccagat
ggccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatactgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
aggatacccaaggtataagatacaatttgctaaacacatgaaactcaaga
agaatgaggactgaagtgtggtcactatgcccctccttagaattgggaac
aaaacacccatggatggagttaaagagacaaagtttggagctgagatgaa
aggatggaccatctagagactgccatatccagggatccactccataatca
gcatccaaactctgacaccattgcatatactagcaagattttatcgaaag
ggacctagatgtagctgtctcttgtaagactatgccggggcctagcaaac
acagaagtggatgctcacagtcatctaatgatggatcacagggctcccaa
tggaggagctagagaaagtaccaaggagctaaatggatctgcatccctta
tagtggaacaacattatgatctaacagtacctcggagctctttgactcta
gctgcatatgtatcaaaagatggctaggtcggccatcactgcaagagagc
ccattggacttgcaacttaatgccccagtacagtggaacgctaggccata
agggtgattggcgtgggatgagtgatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_90248959_90250186
seq2: B6Ng01-163P02.b_43_1255

seq1  GAATTCTGATAGAGCAATAGCTCCTCTAAATGACAGCAAAGGCTTGCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATAGAGCAATAGCTCCTCTAAATGACAGCAAAGGCTTGCAGC  50

seq1  AGGGATGTGAGGCACATCTATTTCAGGGCTTCCCATTAGTGCGAAAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGTGAGGCACATCTATTTCAGGGCTTCCCATTAGTGCGAAAGCAG  100

seq1  TTCAGTAAGAAATGAAGTCATTTCCTGACTCATTGGGATGCCATGTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAAGAAATGAAGTCATTTCCTGACTCATTGGGATGCCATGTTTAA  150

seq1  ACTGCAGTTTTCAGCCTAAGGATACAAAGGTTGAGGAAATGTGGGATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGTTTTCAGCCTAAGGATACAAAGGTTGAGGAAATGTGGGATGAG  200

seq1  CCTAAAAGAGGTGAATCATCCCATGAGGATGCGGGAAATCATCTCTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAGAGGTGAATCATCCCATGAGGATGCGGGAAATCATCTCTTTTC  250

seq1  AGGTCCTTCACACATGACTAGAAGATTTTACATGGAAACGGGGAGCTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTTCACACATGACTAGAAGATTTTACATGGAAACGGGGAGCTGAC  300

seq1  TAAGAGCTCTCATCTATCTTAACATGATAAGAAGGCTCTCCATCCTACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCTCTCATCTATCTTAACATGATAAGAAGGCTCTCCATCCTACAC  350

seq1  CTTCCATTAAAGCCTGTTCCATAAAGAATCTACTTGTAAGTGTCAGAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATTAAAGCCTGTTCCATAAAGAATCTACTTGTAAGTGTCAGAGTA  400

seq1  AAATAAACAGCTCAACATGTAAGAATCCAAAACATCAGATTACAGGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACAGCTCAACATGTAAGAATCCAAAACATCAGATTACAGGGAAA  450

seq1  AGATGTACTTGAATTCTGTTAATTGTCTACGCCTCTGAAACTATGTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTACTTGAATTCTGTTAATTGTCTACGCCTCTGAAACTATGTTATA  500

seq1  CAGGAGCTAAAGAGTTGGCTGAGCAGTTAAGAATACTTGCTGCTCTTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCTAAAGAGTTGGCTGAGCAGTTAAGAATACTTGCTGCTCTTGTA  550

seq1  GGAGACCCAGTTTCGGTTCCCGGCATCATGTGGGGTCTCACAACCTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCCAGTTTCGGTTCCCGGCATCATGTGGGGTCTCACAACCTCCTG  600

seq1  TAATATCAATTCCAGGCTATCTAACACACTCTTCTGGCCTCAGTGGGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCAATTCCAGGCTATCTAACACACTCTTCTGGCCTCAGTGGGCAC  650

seq1  AAGGCCTTCATGTAGTACACAGATATAAATGCAGGCAAAATATTCATATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTTCATGTAGTACACAGATATAAATGCAGGCAAAATATTCATATG  700

seq1  CATTTTGAAAGTTAATTTTTAGAAATTTTAAAAGAATATGTTTATTGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGAAAGTTAATTTTTAGAAATTTTAAAAGAATATGTTTATTGGAC  750

seq1  TTCAGTATTGTTAAGAACTTCATTACATACAATGGTACAG-AATATATAC  799
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTCAGTATTGTTAAGAACTTCATTACATACAATGGTACAGAAATATATAC  800

seq1  ATTAGTATTCCAAAAGAGAAGAAAGGGGGCATAGTAAACAAATACCAGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTATTCCAAAAGAGAAGAAAGGGGGCATAGTAAACAAATACCAGAC  850

seq1  TAAATCAAGACTGAAAGTCAGCAGGACAAACCCCAAATCCTATAGCTCTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAAGACTGAAAGTCAGCAGGACAAACCCCAAATCCTATAGCTCTA  900

seq1  CATCTGATGCCAAAGGGCTTAGATGGCTGTTAATCTAGTTTTGTTAACGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGATGCCAAAGGGCTTAGATGGCTGTTAATCTAGTTTTGTTAACGG  950

seq1  CAACATACTTCTCTATCTTGGGTTGGTTCCACTCGCTCTTTCAAGCTTTC  999
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAACATACTTCTCTATCTTGGGTTGG-TCCACTCGCTCTTTCAAGCTTTC  999

seq1  CTTGGCAGATATTCCA-TAGCTCTGTCCATCTCCAACATCCTGGAATCTA  1048
      |||||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  CTTGGCAGATATTCCATTAGCTCTGTCCATCTCCAACATCCTGG-ATCTA  1048

seq1  CAATGCAATCCAGGCTTCACATTTACAGCTTCACCCAATGACTTCTCGGG  1098
      | ||||||| |||||||||||||||||||||||||  ||||| ||||| |
seq2  C-ATGCAATTCAGGCTTCACATTTACAGCTTCACC--ATGAC-TCTCGTG  1094

seq1  CC-TCTGTG-CATGGA-CTCCCCTGACAC-ATGCTTGGTATCAGTGGTTC  1144
      || |||||| |||||| |||||||||||| |||||| |||||||| ||||
seq2  CCTTCTGTGTCATGGACCTCCCCTGACACTATGCTT-GTATCAGT-GTTC  1142

seq1  TCCTCAATCTTAGAGGATGATTCCACAATTCCTTCATCCCTGTATCCTTC  1194
      |||   |||| ||||    |||||| |||| ||||||  |||||| | ||
seq2  TCCCTCATCTGAGAGAGGAATTCCA-AATT-CTTCAT--CTGTATTC-TC  1187

seq1  ATGGCTCTAAAATCACATGACCAAGGCTGCCAAG  1228
       ||   || ||    ||||||  |||||||||||
seq2  CTG---CTTAA---TCATGAC--AGGCTGCCAAG  1213