BAC Information

Click to search

BAC

Clone NameB6Ng01-166D08
ChromosomeX (Build37)
Map Location 13,492,276 - 13,493,447
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC245350, Ppia-psx_132.1, Usp9x, LOC100043000, LOC100043002, LOC675380, Ddx3x, LOC385326, LOC634019, LOC668990, LOC100043947, LOC100043948, Nyx, LOC675416, Cask, Gpr34, Gpr82
Downstream geneLOC385327, EG385328
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166D08.bB6Ng01-166D08.g
ACCDH958050DH958051
length2171,165
definitionDH958050|Mus musculus domesticus DNA, BAC clone: B6Ng01-166D08, 5' end.DH958051|Mus musculus domesticus DNA, BAC clone: B6Ng01-166D08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
caggtctgtgttcattcaaagatcatacacctaaccctcaagagactaga
gggagtttagaggtcaagtgtggtaggggtgggggtgcaggcatccatgt
gcagacaggatggggagggaaggaggtgtgggatgtggagcacttcgagg
gaaaaaggaaggtagaaactggaacccggaatgctgagaagcctattgac
taaactaactcacatta
gaattctctgaagatggattgaataatacccagaggaaaattagattgac
taatgtttgttgatgttgttgctttttaataaaactatcaagctagatcc
attttcagtttggggatgagaaagtagaaaaaaaaattgtgtatgtgact
atgacaaacaagcacacaagcaagcaagcaagtaagcaaggagcagcata
ggagtacaatccagaagacccaaggaagaatgtagctgggaaaaggatct
tcttcaaagctataagctgtaacttttgtgaaagatccatagaagtctta
gagtcttttatagtagaaattaagacatctattagagaataacaagaaaa
tgattaatttatacaaaacattaaaaaaatgaattcatagagcagtaaga
ctgtagcagtagactaaacagtcctttctagaaataaaaaaacagaattt
ttgttgaattagcagtgcagaaaacaaatataattttctcctgaatgtgg
gtggaaagtgttaagatgttcaacactctaaaggcagtgggacttgggag
agtggaacctaaaaattaggtgggctaatacctcatgcaatggccaactt
tattcagagcatcagacaatctctgagggataacaagcaaagacaccagg
taaaataatgaattgttgaaagtgcctggtaaggggctgaagacatagct
caggacttaaaggacacttgctggtgctgagtttggttcccagcacttat
ggaaggtagctcacaaccatccaagggatctggtaccctcttttggctgc
cagaggcatctgcacttatgtgtacatatccttctaccatacacataaaa
acactacttactaaaataaaaatgttgagaagccaggtggtggtggcaca
tgcctttaatccagcctttgggaaacagattcaggaggtgaatctctgaa
tttgaagcttggactgcagactgagttcaggacagccagggctgtataga
gaaaccctgactcagaaaaacagttagatagattacagtactgactttat
ttttatatttataaacaaagaaatgctgaatttttcatttgagattgggt
tctcactttgtagttggcctggaaacctgctatgtagacaggctgcctat
aactacaagatctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_13492276_13493447
seq2: B6Ng01-166D08.g_66_1230

seq1  GAATTCTCTGAAGATGGATTGAATAATACCCAGAGGAAAATTAGATTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAAGATGGATTGAATAATACCCAGAGGAAAATTAGATTGAC  50

seq1  TAATGTTTGTTGATGTTGTTGCTTTTTAATAAAACTATCAAGCTAGATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTGTTGATGTTGTTGCTTTTTAATAAAACTATCAAGCTAGATCC  100

seq1  ATTTTCAGTTTGGGGATGAGAAAGTAGAAAAAAAAATTGTGTATGTGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGTTTGGGGATGAGAAAGTAGAAAAAAAAATTGTGTATGTGACT  150

seq1  ATGACAAACAAGCACACAAGCAAGCAAGCAAGTAAGCAAGGAGCAGCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAACAAGCACACAAGCAAGCAAGCAAGTAAGCAAGGAGCAGCATA  200

seq1  GGAGTACAATCCAGAAGACCCAAGGAAGAATGTAGCTGGGAAAAGGATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTACAATCCAGAAGACCCAAGGAAGAATGTAGCTGGGAAAAGGATCT  250

seq1  TCTTCAAAGCTATAAGCTGTAACTTTTGTGAAAGATCCATAGAAGTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAAGCTATAAGCTGTAACTTTTGTGAAAGATCCATAGAAGTCTTA  300

seq1  GAGTCTTTTATAGTAGAAATTAAGACATCTATTAGAGAATAACAAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTTTATAGTAGAAATTAAGACATCTATTAGAGAATAACAAGAAAA  350

seq1  TGATTAATTTATACAAAACATTAAAAAAATGAATTCATAGAGCAGTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAATTTATACAAAACATTAAAAAAATGAATTCATAGAGCAGTAAGA  400

seq1  CTGTAGCAGTAGACTAAACAGTCCTTTCTAGAAATAAAAAAACAGAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCAGTAGACTAAACAGTCCTTTCTAGAAATAAAAAAACAGAATTT  450

seq1  TTGTTGAATTAGCAGTGCAGAAAACAAATATAATTTTCTCCTGAATGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAATTAGCAGTGCAGAAAACAAATATAATTTTCTCCTGAATGTGG  500

seq1  GTGGAAAGTGTTAAGATGTTCAACACTCTAAAGGCAGTGGGACTTGGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAGTGTTAAGATGTTCAACACTCTAAAGGCAGTGGGACTTGGGAG  550

seq1  AGTGGAACCTAAAAATTAGGTGGGCTAATACCTCATGCAATGGCCAACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAACCTAAAAATTAGGTGGGCTAATACCTCATGCAATGGCCAACTT  600

seq1  TATTCAGAGCATCAGACAATCTCTGAGGGATAACAAGCAAAGACACCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGAGCATCAGACAATCTCTGAGGGATAACAAGCAAAGACACCAGG  650

seq1  TAAAATAATGAATTGTTGAAAGTGCCTGGTAAGGGGCTGAAGACATAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAATGAATTGTTGAAAGTGCCTGGTAAGGGGCTGAAGACATAGCT  700

seq1  CAGGACTTAAAGGACACTTGCTGGTGCTGAGTTTGGTTCCCAGCACTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTTAAAGGACACTTGCTGGTGCTGAGTTTGGTTCCCAGCACTTAT  750

seq1  GGAAGGTAGCTCACAACCATCCAAGGGATCTGGTACCCTCTTTTGGCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTAGCTCACAACCATCCAAGGGATCTGGTACCCTCTTTTGGCTGC  800

seq1  CAGAGGCATCTGCACTTATGTGTACATATCCTTCTACCATACACATAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCATCTGCACTTATGTGTACATATCCTTCTACCATACACATAAAA  850

seq1  ACACTACTTACTAAAATAAAAATGTTGAGAAGCCAGGTGGTGGTGGCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACTTACTAAAATAAAAATGTTGAGAAGCCAGGTGGTGGTGGCACA  900

seq1  TGCCTTTAATCCAGCCTTTGGGAAACAGATTCAGGGAGGTGAATCTCTGA  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGCCTTTAATCCAGCCTTTGGGAAACAGATTCA-GGAGGTGAATCTCTGA  949

seq1  ATTTGAAGCTTGGACTGCAGACTGAGTTCCAGGACAGCCAGGGCTGTATA  1000
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTTGAAGCTTGGACTGCAGACTGAGTT-CAGGACAGCCAGGGCTGTATA  998

seq1  GAGAAACCCTGACTCAGAAAAACAGTTAAGATTAAGATTACAGTACTGAC  1050
      ||||||||||||||||||||||||||| ||||  ||||||||||||||||
seq2  GAGAAACCCTGACTCAGAAAAACAGTT-AGAT--AGATTACAGTACTGAC  1045

seq1  TATATTTAT-TATTTATTAAAACAAAGACATGCTGAA-TTTTCATTTGAG  1098
      | ||||| | |||||||  ||||||||| |||||||| ||||||||||||
seq2  TTTATTTTTATATTTAT--AAACAAAGAAATGCTGAATTTTTCATTTGAG  1093

seq1  ATAGGG-TCTCACTTTGTAGTTGGCTTGG-AACCTGCTATGTAGACCAGG  1146
      || ||| |||||||||||||||||| ||| ||||||||||||||| ||||
seq2  ATTGGGTTCTCACTTTGTAGTTGGCCTGGAAACCTGCTATGTAGA-CAGG  1142

seq1  CTGCCCTATAACTTACAGAGATCTAC  1172
      ||| |||||||| |||| ||||||||
seq2  CTG-CCTATAAC-TACA-AGATCTAC  1165