BAC Information

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BAC

Clone NameB6Ng01-166I12
ChromosomeX (Build37)
Map Location 109,436,991 - 109,437,966
singlet/doubletsinglet
Overlap geneApool
Upstream geneRps6ka6, EG664791, D030011N01Rik, LOC100038989, Tex16, LOC622570, 4933403O08Rik, EG385407
Downstream geneSatl1, EG623341, 2010106E10Rik, Zfp711, Pof1b, LOC623412, EG623428, LOC100039112, Chm, EG664918, Dach2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166I12.bB6Ng01-166I12.g
ACCDH958288DH958289
length1,1441,157
definitionDH958288|Mus musculus domesticus DNA, BAC clone: B6Ng01-166I12, 5' end.DH958289|Mus musculus domesticus DNA, BAC clone: B6Ng01-166I12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttagctctgcaccccacttttaagagggtaatttggttt
tctggagtctaacttcttgaattctttattatcaacaattaaagatcctc
tgatggaatcaccatccctgacctcaagctgtactacagagcaattgtga
taaaaactgcatggcactggttcagtgacagacaggtagatcagtggaat
agaattgaagacccagaaatgaacccagacacctatggttacttgatctt
tgacaaaggagataaaaccatccactggaataaagaaagcattttcaaca
aatggtgctggctcaactggcaattagcatgtagaagaatcaatccattc
ttatctccttgtataaagctcaagtccatgtggatcaaggatctccacat
aaaaccagagtcactgaaacttatagaggagaaagtgggggaaaagccta
gaacataagggcacaggggaacaattcctgagcagaacaccaatggcttg
tgctctaagttcaagaattgacaaatgggacctcataaaattgcaaagct
tctgtaaggcaaaggacaccgtcaataagacaaaaaggccaccagattgg
gaaaggatctttaccaatcctaaatctgatagggggctaatgtccaatat
atacaaagaactcaagaaattgtctcttattcttatccaggataatgtct
ggcttgtggccatggaaaagctgtgcatgttctggcctgcaaagcccatt
gctcagaattgtctctggctggctgaagcctgttactgtctctctttcct
tacttggctgtttagaaagcactgtgctgagcaataacacttgttggtta
ttttgcatgaaccctacatgcttttaactttgtatattttatgtaatata
aagcttaggtgtacagtatatgtgcttgtagtcacagataacattaggca
tcaattttagtagagtcaaattaaattagtggcttacaacttagtcattt
taaaagacacaaattcatcctgaaacgaactttgactttctttttttttt
aaagatataatatatatgtaagtaccactgtagctgtcttcagacacacc
agaaggagggcgtcagaatggaatggttgtggagccaccatgtg
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctgacgtggatgtggagaaagaggaacactcctacattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggctgttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctcggc
atatatccagaagatgttccaaccgttaagaaggatacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactgactgataagtggatattagccccaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aaaaacgaagactgaagtgtggatactatgcccctccttagaagtgggaa
caaaacacccatggaaggagatacagagacaaagtttggagctgagataa
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagtttttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaagagctagagaaagaacccaaggagctaaagggatctgcacccta
tagtgaacaacattatgactaccagtacccggagctcttgactcagctgc
atatgtatcaaagatggctagtcgccatccactggaagaggagcccattg
gaacgcaacttaatgcccagttcgggaaagccaggccgaaacggaagatt
ggttgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_109436991_109437966
seq2: B6Ng01-166I12.b_214_1187

seq1  TTCAGTGACAGACAGGTAGATCAGTGGAATAGAATTGAAGACCCAGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGACAGACAGGTAGATCAGTGGAATAGAATTGAAGACCCAGAAAT  50

seq1  GAACCCAGACACCTATGGTTACTTGATCTTTGACAAAGGAGATAAAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCAGACACCTATGGTTACTTGATCTTTGACAAAGGAGATAAAACCA  100

seq1  TCCACTGGAATAAAGAAAGCATTTTCAACAAATGGTGCTGGCTCAACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGGAATAAAGAAAGCATTTTCAACAAATGGTGCTGGCTCAACTGG  150

seq1  CAATTAGCATGTAGAAGAATCAATCCATTCTTATCTCCTTGTATAAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAGCATGTAGAAGAATCAATCCATTCTTATCTCCTTGTATAAAGCT  200

seq1  CAAGTCCATGTGGATCAAGGATCTCCACATAAAACCAGAGTCACTGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCATGTGGATCAAGGATCTCCACATAAAACCAGAGTCACTGAAAC  250

seq1  TTATAGAGGAGAAAGTGGGGGAAAAGCCTAGAACATAAGGGCACAGGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAGGAGAAAGTGGGGGAAAAGCCTAGAACATAAGGGCACAGGGGA  300

seq1  ACAATTCCTGAGCAGAACACCAATGGCTTGTGCTCTAAGTTCAAGAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCCTGAGCAGAACACCAATGGCTTGTGCTCTAAGTTCAAGAATTG  350

seq1  ACAAATGGGACCTCATAAAATTGCAAAGCTTCTGTAAGGCAAAGGACACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGGGACCTCATAAAATTGCAAAGCTTCTGTAAGGCAAAGGACACC  400

seq1  GTCAATAAGACAAAAAGGCCACCAGATTGGGAAAGGATCTTTACCAATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATAAGACAAAAAGGCCACCAGATTGGGAAAGGATCTTTACCAATCC  450

seq1  TAAATCTGATAGGGGGCTAATGTCCAATATATACAAAGAACTCAAGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTGATAGGGGGCTAATGTCCAATATATACAAAGAACTCAAGAAAT  500

seq1  TGTCTCTTATTCTTATCCAGGATAATGTCTGGCTTGTGGCCATGGAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTATTCTTATCCAGGATAATGTCTGGCTTGTGGCCATGGAAAAG  550

seq1  CTGTGCATGTTCTGGCCTGCAAAGCCCATTGCTCAGAATTGTCTCTGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCATGTTCTGGCCTGCAAAGCCCATTGCTCAGAATTGTCTCTGGCT  600

seq1  GGCTGAAGCCTGTTACTGTCTCTCTTTCCTTACTTGGCTGTTTAGAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAGCCTGTTACTGTCTCTCTTTCCTTACTTGGCTGTTTAGAAAGC  650

seq1  ACTGTGCTGAGCAATAACACTTGTTGGTTATTTTGCATGAACCCTACATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCTGAGCAATAACACTTGTTGGTTATTTTGCATGAACCCTACATG  700

seq1  CTTTTAACTTTGTATATTTTATGTAATATAAAGCTTAGGTGTACAGTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAACTTTGTATATTTTATGTAATATAAAGCTTAGGTGTACAGTATA  750

seq1  TGTGCTTGTAGTCACAGATAACATTAGGCATCAATTTTAGTAGAGTCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTGTAGTCACAGATAACATTAGGCATCAATTTTAGTAGAGTCAAA  800

seq1  TTAAATTAGTGGCTTACAACTTAGTCATTTTAAAAGACACAAATTCATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTAGTGGCTTACAACTTAGTCATTTTAAAAGACACAAATTCATCC  850

seq1  TGAAACGAACTTTGACTTTCTTTTTTTTTTTAAAGATTTATTTATTTATT  900
      |||||||||||||||||||| |||||||||||||||| || |       |
seq2  TGAAACGAACTTTGACTTTC-TTTTTTTTTTAAAGATATAAT------AT  893

seq1  ATATGTAAGTA-CACTGTAGCTGTCTTCAGACACACGAGAA-GAGGGCGT  948
      ||||||||||| |||||||||||||||||||||||| |||| ||||||||
seq2  ATATGTAAGTACCACTGTAGCTGTCTTCAGACACACCAGAAGGAGGGCGT  943

seq1  CAG-ATGG-ATGGTTGT-GAGCCACCATGTG  976
      ||| |||| |||||||| |||||||||||||
seq2  CAGAATGGAATGGTTGTGGAGCCACCATGTG  974