BAC Information

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BAC

Clone NameB6Ng01-168I02
ChromosomeX (Build37)
Map Location 89,057,096 - 89,207,913
singlet/doubletdoublet
Overlap geneLOC673766, LOC633484, LOC674396, EG278087
Upstream geneLOC100041815, Gm44, LOC670074, LOC667972, LOC667976, Mageb2, EG278167, EG667988, EG667993, EG385489, 1700084M14Rik, EG236891, LOC629542, Mageb5
Downstream geneMageb1, EG236892, EG236893, Mageb18, EG436259, EG668061, EG546347, LOC629568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168I02.bB6Ng01-168I02.g
ACCDH959727DH959728
length1,230503
definitionDH959727|Mus musculus domesticus DNA, BAC clone: B6Ng01-168I02, 5' end.DH959728|Mus musculus domesticus DNA, BAC clone: B6Ng01-168I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,057,096 - 89,057,979)(89,207,405 - 89,207,913)
sequence
gaattctagcaatgacgtaccatggtctcctagaagatatgggcataatg
acaaagggtaccattgggatattggtatggtaaccactgaacattactgc
cccaaagacttgcccactacagggcctggcctgaactgtgaaaaaacaga
agacaactggagaactgattgccacaagttgtttcagttgaaggtgagct
caatctctcacacgttccttctccacaggacaaaaccaattcatcttctg
ggcctaatgaccaaagatttcctctgccataaagacacaggagtctggaa
taactgttgtggtaatatgatatgtgctagtatctgccattttaattgat
acacacatcatttatccttcttcagatctctaatcacattgatggctaaa
ttacttgaagctcaacagctaaaagaaaaacaaaattaacaacaggcagc
aagctcaggagcttgttattatgttatttaaaaggccaaacaattttgcc
ttgctcacaggtttcatattaaatgactgctctcaataatcaactgcctg
tagttcacagtaaaaattgaaataaaaaaggtaaaatttgaacttcattt
aaggtctaagaaaaaatgtttatggaaaatatttgagattgataaatgca
aatgatgaaagttaaaggatataaatgtacttggatgatgataaatacaa
taatatggaaataaaaatgcttcagataaaaatgtttaaagctggtaaat
gcaagttataaatgctgaggggcttaagaaaaattttgaagatgtataaa
tgcaaattataaaaataaaaatgatttaagatatagaaatggctcttctt
cccgccagcttcctacccaggacagatcatctgccagatacccacccata
ccttctgcctgcttacctcccagagggtctacaaaaattaaagaaacagg
tgagaatctcacccaaataccctcaccagctgggacacagcaggacccag
ctgaccagggacccacctcccagatgttctgagtcttatcttctcctatc
tgcttctactcaagcaacttcagttcccagaataaccacacattgtacag
cctgctgcctcacaaagttcaaagtaacaaagacaaagaagccagcttga
catggaaccaccttaccttgcctagctcacctcttactctccacttctac
ccaggccatattcagagggcctggtatacc
ctaatttccatcccataatcagccaccaaacccagacactattgcatatg
ccagaaagattttgctgaagagaccctgttatagctgtctcatatgaggc
tatgccagtgcctggcaaatacagaagtggatgctcacagtcatctataa
aatggaacacagggcccccaatggagaagctagagagagcacccaaggag
ctgaaggggtctgcaaccctataggtggaacaacaatatgaactaaccag
tatccccagagctcgtatctctagcagcatatgtagcagaagatggccta
gtcggccatcactgggaagagaggcccttggtcttgcaaactttatatgc
cccagcacaggggaaggccagggccaagaagtctgagtgggtgggtaggg
gagcagggcggagggagggtatagggaactttcggaatagcatttgaaat
atatataaagaaaatatctaataattaataaaaataaataaataaataga
att
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_89057096_89057979
seq2: B6Ng01-168I02.b_400_1274

seq1  CATCATTTATCCTTCTTCAGATCTCTAATCACATTGATGGCTAAATTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTTATCCTTCTTCAGATCTCTAATCACATTGATGGCTAAATTACT  50

seq1  TGAAGCTCAACAGCTAAAAGAAAAACAAAATTAACAACAGGCAGCAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTCAACAGCTAAAAGAAAAACAAAATTAACAACAGGCAGCAAGCT  100

seq1  CAGGAGCTTGTTATTATGTTATTTAAAAGGCCAAACAATTTTGCCTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCTTGTTATTATGTTATTTAAAAGGCCAAACAATTTTGCCTTGCT  150

seq1  CACAGGTTTCATATTAAATGACTGCTCTCAATAATCAACTGCCTGTAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTTTCATATTAAATGACTGCTCTCAATAATCAACTGCCTGTAGTT  200

seq1  CACAGTAAAAATTGAAATAAAAAAGGTAAAATTTGAACTTCATTTAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAAAAATTGAAATAAAAAAGGTAAAATTTGAACTTCATTTAAGGT  250

seq1  CTAAGAAAAAATGTTTATGGAAAATATTTGAGATTGATAAATGCAAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAAAAATGTTTATGGAAAATATTTGAGATTGATAAATGCAAATGA  300

seq1  TGAAAGTTAAAGGATATAAATGTACTTGGATGATGATAAATACAATAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTTAAAGGATATAAATGTACTTGGATGATGATAAATACAATAATA  350

seq1  TGGAAATAAAAATGCTTCAGATAAAAATGTTTAAAGCTGGTAAATGCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATAAAAATGCTTCAGATAAAAATGTTTAAAGCTGGTAAATGCAAG  400

seq1  TTATAAATGCTGAGGGGCTTAAGAAAAATTTTGAAGATGTATAAATGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATGCTGAGGGGCTTAAGAAAAATTTTGAAGATGTATAAATGCAA  450

seq1  ATTATAAAAATAAAAATGATTTAAGATATAGAAATGGCTCTTCTTCCCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAAAATAAAAATGATTTAAGATATAGAAATGGCTCTTCTTCCCGC  500

seq1  CAGCTTCCTACCCAGGACAGATCATCTGCCAGATACCCACCCATACCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCCTACCCAGGACAGATCATCTGCCAGATACCCACCCATACCTTC  550

seq1  TGCCTGCTTACCTCCCAGAGGGTCTACAAAAATTAAAGACACAGGTGAGA  600
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGCCTGCTTACCTCCCAGAGGGTCTACAAAAATTAAAGAAACAGGTGAGA  600

seq1  ATCTCACCCAAATACCCTCACCAGCTGGGACAACAGCAGGACCCAGCTGA  650
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATCTCACCCAAATACCCTCACCAGCTGGGAC-ACAGCAGGACCCAGCTGA  649

seq1  CCAGGGACCCACCTCCCAGATGTTCTGAGTCCTATCCTTCTTCCTATCTG  700
      ||||||||||||||||||||||||||||||| ||| |||| |||||||||
seq2  CCAGGGACCCACCTCCCAGATGTTCTGAGTCTTAT-CTTC-TCCTATCTG  697

seq1  CTTCCTACTCAGGCCAACTCAGTTCCCAG-ATAACCACCAACATGTTACA  749
      ||| ||||||| || |  ||||||||||| ||||||||  ||||  ||||
seq2  CTT-CTACTCAAGCAACTTCAGTTCCCAGAATAACCAC--ACATTGTACA  744

seq1  GCCTGCTTGCCTCCTACAAAGTTCAAAGTAACCAAAGACAAAGAGCCCAG  799
      |||||| ||||||  |||||||||||||||| ||||||||||||  ||||
seq2  GCCTGC-TGCCTC--ACAAAGTTCAAAGTAA-CAAAGACAAAGAAGCCAG  790

seq1  C-TGACATGGAACACACC-TGCCCTGCCTAGCTCCACCTCCTTACTCCTC  847
      | ||||||||||| |||| | || ||||||||| ||||| |||||| |||
seq2  CTTGACATGGAAC-CACCTTACCTTGCCTAGCT-CACCT-CTTACT-CTC  836

seq1  CACTTCTACACCAGGCCATA-TCAGAAGGCCTG--ATACC  884
      ||||||||| |||||||||| ||||| ||||||  |||||
seq2  CACTTCTAC-CCAGGCCATATTCAGAGGGCCTGGTATACC  875

seq1: chrX_89207405_89207913
seq2: B6Ng01-168I02.g_69_577 (reverse)

seq1  AATTCTATTTATTTATTTATTTTTATTTATTATTAGATATTTTCTTTATA  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AATTCTATTTATTTATTTATTTTTATTAATTATTAGATATTTTCTTTATA  50

seq1  TATATTTCAAATGCTATTCCGAAAGTTCCCTATACCCTCCCTCCGCCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCAAATGCTATTCCGAAAGTTCCCTATACCCTCCCTCCGCCCTG  100

seq1  CTCCCCTACCCACCCACTCAGACTTCTTGGCCCTGGCCTTCCCCTGTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTACCCACCCACTCAGACTTCTTGGCCCTGGCCTTCCCCTGTGCT  150

seq1  GGGGCATATAAAGTTTGCAAGACCAAGGGCCTCTCTTCCCAGTGATGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCATATAAAGTTTGCAAGACCAAGGGCCTCTCTTCCCAGTGATGGCC  200

seq1  GACTAGGCCATCTTCTGCTACATATGCTGCTAGAGATACGAGCTCTGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGGCCATCTTCTGCTACATATGCTGCTAGAGATACGAGCTCTGGGG  250

seq1  ATACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCCCTT  300

seq1  CAGCTCCTTGGGTGCTCTCTCTAGCTTCTCCATTGGGGGCCCTGTGTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTTGGGTGCTCTCTCTAGCTTCTCCATTGGGGGCCCTGTGTTCC  350

seq1  ATTTTATAGATGACTGTGAGCATCCACTTCTGTATTTGCCAGGCACTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAGATGACTGTGAGCATCCACTTCTGTATTTGCCAGGCACTGGC  400

seq1  ATAGCCTCATATGAGACAGCTATAACAGGGTCTCTTCAGCAAAATCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTCATATGAGACAGCTATAACAGGGTCTCTTCAGCAAAATCTTTC  450

seq1  TGGCATATGCAATAGTGTCTGGGTTTGGTGGCTGATTATGGGATGGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATATGCAATAGTGTCTGGGTTTGGTGGCTGATTATGGGATGGAAAT  500

seq1  TAGGAATTC  509
      |||||||||
seq2  TAGGAATTC  509