BAC Information

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BAC

Clone NameB6Ng01-169K11
ChromosomeX (Build37)
Map Location 93,438,578 - 93,562,640
singlet/doubletdoublet
Overlap geneVsig4, B230358A15Rik
Upstream geneLOC100042189, 2810002O09Rik, Asb12, LOC668202, AK129302, A130028J20Rik, 1700010D01Rik, Las1l, Msn, Psmb7-ps1, LOC668221
Downstream geneHeph, Gpr165, LOC675824, LOC668234, EG668236, LOC668238, Pgr15l, Eda2r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169K11.bB6Ng01-169K11.g
ACCDH960574DH960575
length1,141698
definitionDH960574|Mus musculus domesticus DNA, BAC clone: B6Ng01-169K11, 5' end.DH960575|Mus musculus domesticus DNA, BAC clone: B6Ng01-169K11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,438,578 - 93,439,739)(93,561,654 - 93,562,640)
sequence
gaattctatgagaaagtaggaaataaatatccactgtctggccttcggag
cacatcttaagctacctacattttctcttttccactttgcttttatcatt
cttaaaagaaccttcttgtttatcttcattgggctttcagacactaccaa
attccaattcctcttggcactattgaaagttaacctatacttttctttac
tccttggctaaccacatactggtatgtgctattatatgtcctaccatcca
acacatcttctaaagttgtcagtgaatttttccagggtatgttcttgaat
tccctattatattgtaagaatctagagcttattatattcagttgattgct
gtctctcataccattgtccaacattttaattattaataaatatttaccaa
ttaattgatgttttactagtcaataaccttttgctatataggtcaaatac
caaccagggttttgcgaaaaaaataaatcaaactgtgggtattctaatgc
tatagtgtatacaagatggtaaccaaaatggatttttttttcctctgaga
aataagatttaggtctggggcaggagggcaagaagaaagaatagactcag
agggaaaaattttttgaattattggtttacacgtgtctttttaaacagaa
ttttctgagcctttaatattctatcattgcactggggtgaacttctaata
tagaactataaaatgaagcatctccaatccctctctccagagtctaacat
ttcataacatatattttggcaagcttctttagagaaattccatactctcc
cttggttctggagaaattccatactctcccttggttctggagatacctac
tttcattctttaacttttcacccactaaccagtgacctaaataacaagac
ccatattgttaccccaatttgctcagaattgtcggagggatgcatctcta
tctagggatgacttactggcttaccctgcatggaaaataccatgtttagg
acaaagacatcttcagaagatgtctgcagcaaagtacacacactgctaaa
atccacagtctaacctcagtctttgttctgccatgactgatgtatgttac
tttgacaactcaatctctgggcctcactccaattgggtatg
gaattctttgtttacctttgtaccccatttttaatggggttagctgccta
tgtagcagaagatggtctagtcggccatcattgggaagagaggaccctag
gacttgcaaactttatatgccccagtacaagggaatgccagggccaagaa
gtgggagtgggtgggtagtggagcagggcaggggaagggtatagggaact
ttcgggatagcatttgaaatgtaaataaagaaaatatctaataaaaaaat
aaacacataaaagaaaagtcactcaaggtaggacagctttaccataaaaa
tacaagtagcctcacactactgatttcccaccaaagctcaaatttgttgg
ggttttgggcttttactctatagtacttgctatggttgtgagatcataca
gtatgctacatgagtgctctaccaccaagctacatcactagctcttacta
tatgtttctttgaaagacaaggtttgactatttagccctggctgacctga
aagtcactacgtagatcagattagtaaactgatgaagctttccagccaaa
tgtacctaaactgtcagtttctaagagaatttgtgatacacctcattttc
tctctgggacattattaaccactcatttgagtaagctgagtgaattacaa
gtgtactcccctgccactgggattttgaattatatttacctttcaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_93438578_93439739
seq2: B6Ng01-169K11.b_48_1188

seq1  GAATTCTATGAGAAAGTAGGAAATAAATATCCACTGTCTGGCCTTCGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGAGAAAGTAGGAAATAAATATCCACTGTCTGGCCTTCGGAG  50

seq1  CACATCTTAAGCTACCTACATTTTCTCTTTTCCACTTTGCTTTTATCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTTAAGCTACCTACATTTTCTCTTTTCCACTTTGCTTTTATCATT  100

seq1  CTTAAAAGAACCTTCTTGTTTATCTTCATTGGGCTTTCAGACACTACCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAGAACCTTCTTGTTTATCTTCATTGGGCTTTCAGACACTACCAA  150

seq1  ATTCCAATTCCTCTTGGCACTATTGAAAGTTAACCTATACTTTTCTTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAATTCCTCTTGGCACTATTGAAAGTTAACCTATACTTTTCTTTAC  200

seq1  TCCTTGGCTAACCACATACTGGTATGTGCTATTATATGTCCTACCATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGCTAACCACATACTGGTATGTGCTATTATATGTCCTACCATCCA  250

seq1  ACACATCTTCTAAAGTTGTCAGTGAATTTTTCCAGGGTATGTTCTTGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCTTCTAAAGTTGTCAGTGAATTTTTCCAGGGTATGTTCTTGAAT  300

seq1  TCCCTATTATATTGTAAGAATCTAGAGCTTATTATATTCAGTTGATTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATTATATTGTAAGAATCTAGAGCTTATTATATTCAGTTGATTGCT  350

seq1  GTCTCTCATACCATTGTCCAACATTTTAATTATTAATAAATATTTACCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCATACCATTGTCCAACATTTTAATTATTAATAAATATTTACCAA  400

seq1  TTAATTGATGTTTTACTAGTCAATAACCTTTTGCTATATAGGTCAAATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGATGTTTTACTAGTCAATAACCTTTTGCTATATAGGTCAAATAC  450

seq1  CAACCAGGGTTTTGCGAAAAAAATAAATCAAACTGTGGGTATTCTAATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGGGTTTTGCGAAAAAAATAAATCAAACTGTGGGTATTCTAATGC  500

seq1  TATAGTGTATACAAGATGGTAACCAAAATGGATTTTTTTTTCCTCTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGTATACAAGATGGTAACCAAAATGGATTTTTTTTTCCTCTGAGA  550

seq1  AATAAGATTTAGGTCTGGGGCAGGAGGGCAAGAAGAAAGAATAGACTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGATTTAGGTCTGGGGCAGGAGGGCAAGAAGAAAGAATAGACTCAG  600

seq1  AGGGAAAAATTTTTTGAATTATTGGTTTACACGTGTCTTTTTAAACAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAAATTTTTTGAATTATTGGTTTACACGTGTCTTTTTAAACAGAA  650

seq1  TTTTCTGAGCCTTTAATATTCTATCATTGCACTGGGGTGAACTTCTAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGAGCCTTTAATATTCTATCATTGCACTGGGGTGAACTTCTAATA  700

seq1  TAGAACTATAAAATGAAGCATCTCCAATCCCTCTCTCCAGAGTCTAACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTATAAAATGAAGCATCTCCAATCCCTCTCTCCAGAGTCTAACAT  750

seq1  TTCATAACATATATTTTGGCAAGCTTCTTTAGAGAAATTCCATACTCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAACATATATTTTGGCAAGCTTCTTTAGAGAAATTCCATACTCTCC  800

seq1  CTTGGTTCTGGAGAAATTCCATACTCTCCCTTGGTTCTGGAGATACCTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTCTGGAGAAATTCCATACTCTCCCTTGGTTCTGGAGATACCTAC  850

seq1  TTTCATTCTTTAACTTTTCACCCACTAACCAGTGACCTAAATAACAAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCTTTAACTTTTCACCCACTAACCAGTGACCTAAATAACAAGAC  900

seq1  CCATATTGTTACCCCAATTTTGCTCAGAATTGTCGGAGGGATGCATCTCT  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCATATTGTTACCCCAA-TTTGCTCAGAATTGTCGGAGGGATGCATCTCT  949

seq1  ATCTAGGGATGACTTACTGGCTTACCCTGCATGGAAAAATACCATTGTTT  1000
      |||||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  ATCTAGGGATGACTTACTGGCTTACCCTGCATGG-AAAATACCA-TGTTT  997

seq1  AGGGACAAAGACCATCTTCAGAAGATGTCTGCAGCAAAGTACACACACTG  1050
      | ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  A-GGACAAAGA-CATCTTCAGAAGATGTCTGCAGCAAAGTACACACACTG  1045

seq1  CTAAAAATCCACAGGTCTAACCTCCAGTCTTTGTTCTGCCATTGACTTGA  1100
      || |||||||||| ||||||||| ||||||||||||||||| |||| |||
seq2  CT-AAAATCCACA-GTCTAACCT-CAGTCTTTGTTCTGCCA-TGAC-TGA  1090

seq1  TGTATGTTACTTTTGACAAACCTTCATTTCTCTCTGGGCTTCACTTCCCA  1150
      |||||||||| ||||||||    |||    ||||||||| |||||  |||
seq2  TGTATGTTAC-TTTGACAA---CTCA---ATCTCTGGGCCTCACT--CCA  1131

seq1  ATTTGTGGTATG  1162
      |||   ||||||
seq2  ATT--GGGTATG  1141

seq1: chrX_93561654_93562640
seq2: B6Ng01-169K11.g_69_766 (reverse)

seq1  ATTTGAAGTTAGCTGTGGTACTTGGGAGTTCATTGTACCCCTTTATATTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTGTTTGGCATTTTATTAACAAAAAAATTAACCTTGGCAGAGTGTGGTAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TACATTCTTGTAATACCAGCACCGGGCAGGCTGAGGCAAGGTGATCATGA  150
                                                        
seq2  --------------------------------------------------  0

seq1  ATTCAAGATAAACCTGGGCCACAGAGTGAGACCCTATCTATCTCAAAAAC  200
                                                        
seq2  --------------------------------------------------  0

seq1  AAATGAACACAGTGCCAAATTAACTATTATTTTAGAGAACTGGCCATGGT  250
                                                        
seq2  --------------------------------------------------  0

seq1  CTGCTCTGAACACATTCTACAAGATTTTCCCCAGTCAGAATGATTAG-AA  299
                                                ||| | ||
seq2  ------------------------------------------ATTTGAAA  8

seq1  GGTAAATATAATTCAAAATCCCAGTGGCA-GGGAGTACACTTGTAATTCA  348
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGTAAATATAATTCAAAATCCCAGTGGCAGGGGAGTACACTTGTAATTCA  58

seq1  CTCAGCTTACTC-AATGAGTGGTTAATAATGTCCCAGAGAGAAAATGAGG  397
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTTACTCAAATGAGTGGTTAATAATGTCCCAGAGAGAAAATGAGG  108

seq1  TGTATCACAAATTCTCTTAGAAACTGACAGTTTAGGTACATTTGGCTGGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCACAAATTCTCTTAGAAACTGACAGTTTAGGTACATTTGGCTGGA  158

seq1  AAGCTTCATCAGTTTACTAATCTGATCTACGTAGTGACTTTCAGGTCAGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCATCAGTTTACTAATCTGATCTACGTAGTGACTTTCAGGTCAGC  208

seq1  CAGGGCTAAATAGTCAAACCTTGTCTTTCAAAGAAACATATAGTAAGAGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTAAATAGTCAAACCTTGTCTTTCAAAGAAACATATAGTAAGAGC  258

seq1  TAGTGATGTAGCTTGGTGGTAGAGCACTCATGTAGCATACTGTATGATCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATGTAGCTTGGTGGTAGAGCACTCATGTAGCATACTGTATGATCT  308

seq1  CACAACCATAGCAAGTACTATAGAGTAAAAGCCCAAAACCCCAACAAATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCATAGCAAGTACTATAGAGTAAAAGCCCAAAACCCCAACAAATT  358

seq1  TGAGCTTTGGTGGGAAATCAGTAGTGTGAGGCTACTTGTATTTTTATGGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTTGGTGGGAAATCAGTAGTGTGAGGCTACTTGTATTTTTATGGT  408

seq1  AAAGCTGTCCTACCTTGAGTGACTTTTCTTTTATGTGTTTATTTTTTTAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGTCCTACCTTGAGTGACTTTTCTTTTATGTGTTTATTTTTTTAT  458

seq1  TAGATATTTTCTTTATTTACATTTCAAATGCTATCCCGAAAGTTCCCTAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATTTTCTTTATTTACATTTCAAATGCTATCCCGAAAGTTCCCTAT  508

seq1  ACCCTTCCCCTGCCCTGCTCCACTACCCACCCACTCCCACTTCTTGGCCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCCCCTGCCCTGCTCCACTACCCACCCACTCCCACTTCTTGGCCC  558

seq1  TGGCATTCCCTTGTACTGGGGCATATAAAGTTTGCAAGTCCTAGGGTCCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTCCCTTGTACTGGGGCATATAAAGTTTGCAAGTCCTAGGGTCCT  608

seq1  CTCTTCCCAATGATGGCCGACTAGACCATCTTCTGCTACATAGGCAGCTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCCAATGATGGCCGACTAGACCATCTTCTGCTACATAGGCAGCTA  658

seq1  ACCCCATTAAAAATGGGGTACAAAGGTAAACAAAGAATTC  987
      ||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATTAAAAATGGGGTACAAAGGTAAACAAAGAATTC  698