BAC Information

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BAC

Clone NameB6Ng01-170A09
ChromosomeX (Build37)
Map Location 109,782,865 - 109,908,441
singlet/doubletdoublet
Overlap genePof1b, LOC623412
Upstream geneD030011N01Rik, LOC100038989, Tex16, LOC622570, 4933403O08Rik, EG385407, Apool, Satl1, EG623341, 2010106E10Rik, Zfp711
Downstream geneEG623428, LOC100039112, Chm, EG664918, Dach2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170A09.bB6Ng01-170A09.g
ACCDH960842DH960843
length1,1001,082
definitionDH960842|Mus musculus domesticus DNA, BAC clone: B6Ng01-170A09, 5' end.DH960843|Mus musculus domesticus DNA, BAC clone: B6Ng01-170A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,907,337 - 109,908,441)(109,782,865 - 109,783,959)
sequence
gaattctttcagcagaacctagaaacagcaagtgccgtgatgagaaaaaa
taatcggtagtcactcgttccctttctcattaagtgaaatctatgaagta
tttaattcaatggcatgttcctggtggctacttaggtaacgatgaaaaaa
aaataaaataatgactagtatttatgcaagatgctttccctgctgtaacc
ttcatactcaaattttattttaagccacttttttctactcaactcatgta
atgaacataaattgctgtatatgttttccttttcacatcggcacaaactc
aaatctcattcatcggtttctacttttttcctaagtttgtacaaacacct
gagaaaggtatatttttatgacatgcttgcaacaaatggaaattatcact
ggtatttatgcttggcagattattgtctaaatcaattagtttattgtcaa
aaaataaaatctgtgcgtgcttctcttccttagtaaaatgtacaattctg
taaaactctgagtagtagataaaatattttaaaggaaaatgaacatctac
cccacttacagaatttattctaataacataattatgaaaatgtagatagt
tttccttttgggagatagtgacaagctccattataagttattcaatgcca
agcagtcagacctaaacacatatgcatataaacaacactaagtaaactaa
gaagctatttatatatacaaacatatgtagtaataacaataactttaaaa
gaatacatgaatctgaaagggactaggaggacatgggaggagtttggaag
gagagagagaacagtgaaaatgatgtaaatgcagaactcatacatacatg
acattctaaaaataaataaatttgaaacacatgcatgtctacaatgttaa
agatgtacaatttcaaagaacgagtaaagtattattacgcccttaccctc
gggcccactttactgaatttattttaagaccacaatttgaaaattacata
gaattcttctatatcttttgagccaggcctcactcttgaccagactgaat
cagactgatttatgtagcacagtagcatcaaactcacagggtctcttgcg

gaattcattaaaaagtttcttccaggaggaagaaagaattttaaaaaata
gtctgttgatgagaacaatttgaattcctcctatttttactggttctcca
gggaagaactgaagaaagtaggaaatatagtattcatttttctgggtgag
aaatgggggtgaagtataaagtagatggggcttgagttgctgtatccctg
ctctaagacaggacacaagtaaaatgtctgtcttctaaggtagtcttgct
taaaattgacagcatttaaactggggtcacaggcaggtttctttctatgt
aaagaaattattagagaactttagaataaacagaattcattctgaaccat
agaatttaataaaccataaagtggggagaactgcattgacctatcttttc
taggactcaatttgcatgtcattgaagtatacaatccctatttgtgatga
taatcaagactaagattctcagtacaacatatgttttgagtactgagaac
agggcagaaactttaagagccactgtatctccatataatcaagtaaattg
ctataacattagccaagtacttagaagatatcagtcaatgaaataaaggc
ctgtgacgtgtattagattgaaagactaatgaaaaaaaatcacacaagga
gttcaacgtaaatgtaacgtaaatcacattatttttccccattttttctt
ttgttttgagaaagggtcttgctgtagccctccctggctgcctcagaact
cattagctcttgctggccttgcattcaggtatccgcctacttttgcttcc
aagcactagggcattaaagatgagtgcaaccatgtccagtttttccttct
gatttcatttgagtcattgatttgccacaaaacaaaaatgtgtaaatgta
tttttgtggacatatagagaataaaactgctactatatggaaatattggt
tatttgaaaaaaattgtaattatctccgttcttaagaactgacctcaaag
acttttatgtaggagaaatactttattcttgtctgcagactcgatattct
atgaaagaataaaagagttctggttagtaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_109907337_109908441
seq2: B6Ng01-170A09.b_46_1145 (reverse)

seq1  CGCAAGAGGACTCCTGTGAGTTTGATGCTAACCTGTGCTACAT-AATCAG  49
      ||||||| ||| ||||||||||||||||||  ||||||||||| ||||||
seq2  CGCAAGA-GAC-CCTGTGAGTTTGATGCTA--CTGTGCTACATAAATCAG  46

seq1  TTCTGAATCAGTCTGGGTCAGAGTGAGGGCCTGGCTCAAAAGATATAGAA  99
       ||||| |||||||||   ||||||| |||||||||||||||||||||||
seq2  -TCTGATTCAGTCTGGTCAAGAGTGA-GGCCTGGCTCAAAAGATATAGAA  94

seq1  GAATTCTATGT-ATTTTCAAATTGTGGTCTTAAAATAAATTCAGTAAAGT  148
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTAATTTTCAAATTGTGGTCTTAAAATAAATTCAGTAAAGT  144

seq1  GGGCCCGAGGGTAATTTGACTTAATAATACTTTACTCGTTCTTTGAAATT  198
      ||||||||||||||   | | |||||||||||||||||||||||||||||
seq2  GGGCCCGAGGGTAA--GGGCGTAATAATACTTTACTCGTTCTTTGAAATT  192

seq1  GTACATCTTTAACATTGTAGACATGCATGTGTTTCAAATTTATTTATTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATCTTTAACATTGTAGACATGCATGTGTTTCAAATTTATTTATTTT  242

seq1  TAGAATGTCATGTATGTATGAGTTCTGCATTTACATCATTTTCACTGTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGTCATGTATGTATGAGTTCTGCATTTACATCATTTTCACTGTTC  292

seq1  TCTCTCTCCTTCC-AACTCCTCCCATGTCCTCCTAGTCCCTTTCAGATTC  347
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCCTTCCAAACTCCTCCCATGTCCTCCTAGTCCCTTTCAGATTC  342

seq1  ATGTATTCTTTTAAAGTTATTGTTATTACTACATATGTTTGTATATATAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTCTTTTAAAGTTATTGTTATTACTACATATGTTTGTATATATAA  392

seq1  ATAGCTTCTTAGTTTACTTAGTGTTGTTTATATGCATATGTGTTTAGGTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTCTTAGTTTACTTAGTGTTGTTTATATGCATATGTGTTTAGGTC  442

seq1  TGACTGCTTGGCATTGAATAACTTATAATGGAGCTTGTCACTATCTCCCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCTTGGCATTGAATAACTTATAATGGAGCTTGTCACTATCTCCCA  492

seq1  AAAGGAAAACTATCTACATTTTCATAATTATGTTATTAGAATAAATTCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAACTATCTACATTTTCATAATTATGTTATTAGAATAAATTCTG  542

seq1  TAAGTGGGGTAGATGTTCATTTTCCTTTAAAATATTTTATCTACTACTCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGGGTAGATGTTCATTTTCCTTTAAAATATTTTATCTACTACTCA  592

seq1  GAGTTTTACAGAATTGTACATTTTACTAAGGAAGAGAAGCACGCACAGAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTACAGAATTGTACATTTTACTAAGGAAGAGAAGCACGCACAGAT  642

seq1  TTTATTTTTTGACAATAAACTAATTGATTTAGACAATAATCTGCCAAGCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTTGACAATAAACTAATTGATTTAGACAATAATCTGCCAAGCA  692

seq1  TAAATACCAGTGATAATTTCCATTTGTTGCAAGCATGTCATAAAAATATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACCAGTGATAATTTCCATTTGTTGCAAGCATGTCATAAAAATATA  742

seq1  CCTTTCTCAGGTGTTTGTACAAACTTAGGAAAAAAGTAGAAACCGATGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCAGGTGTTTGTACAAACTTAGGAAAAAAGTAGAAACCGATGAA  792

seq1  TGAGATTTGAGTTTGTGCCGATGTGAAAAGGAAAACATATACAGCAATTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTGAGTTTGTGCCGATGTGAAAAGGAAAACATATACAGCAATTT  842

seq1  ATGTTCATTACATGAGTTGAGTAGAAAAAAGTGGCTTAAAATAAAATTTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATTACATGAGTTGAGTAGAAAAAAGTGGCTTAAAATAAAATTTG  892

seq1  AGTATGAAGGTTACAGCAGGGAAAGCATCTTGCATAAATACTAGTCATTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGAAGGTTACAGCAGGGAAAGCATCTTGCATAAATACTAGTCATTA  942

seq1  TTTTATTTTTTTTTCATCGTTACCTAAGTAGCCACCAGGAACATGCCATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTTTTTCATCGTTACCTAAGTAGCCACCAGGAACATGCCATT  992

seq1  GAATTAAATACTTCATAGATTTCACTTAATGAGAAAGGGAACGAGTGACT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAATACTTCATAGATTTCACTTAATGAGAAAGGGAACGAGTGACT  1042

seq1  ACCGATTATTTTTTCTCATCACGGCACTTGCTGTTTCTAGGTTCTGCTGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGATTATTTTTTCTCATCACGGCACTTGCTGTTTCTAGGTTCTGCTGA  1092

seq1  AAGAATTC  1105
      ||||||||
seq2  AAGAATTC  1100

seq1: chrX_109782865_109783959
seq2: B6Ng01-170A09.g_70_1151

seq1  GAATTCATTAATAAGTTTCTTCCAGGAGGAAGAAAGAATTTTAAAAAATA  50
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAAAAGTTTCTTCCAGGAGGAAGAAAGAATTTTAAAAAATA  50

seq1  GTCTGTTGATGAGAACAATTTGAATTCCTCCTATTTTTACTGGTTCTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTGATGAGAACAATTTGAATTCCTCCTATTTTTACTGGTTCTCCA  100

seq1  GGGAAGAACTGAAGAAAGTAGGAAATATAGTATTCATTTTTCTGGGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAACTGAAGAAAGTAGGAAATATAGTATTCATTTTTCTGGGTGAG  150

seq1  AAATGGGGGTGAAGTATAAAGTAGATGGGGCTTGAGTTGCTGTATCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGGGTGAAGTATAAAGTAGATGGGGCTTGAGTTGCTGTATCCCTG  200

seq1  CTCTAAGACAGGACACAAGTAAAATGTCTGTCTTCTAAGGTAGTCTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGACAGGACACAAGTAAAATGTCTGTCTTCTAAGGTAGTCTTGCT  250

seq1  TAAAATTGACAGCATTTAAACTGGGGTCACAGGCAGGTTTCTTTCTATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTGACAGCATTTAAACTGGGGTCACAGGCAGGTTTCTTTCTATGT  300

seq1  AAAGAAATTATTAGAGAACTTTAGAATAAACAGAATTCATTCTGAACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATTATTAGAGAACTTTAGAATAAACAGAATTCATTCTGAACCAT  350

seq1  AGAATTTAATAAACCATAAAGTGGGGAGAACTGCATTGACCTATCTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTAATAAACCATAAAGTGGGGAGAACTGCATTGACCTATCTTTTC  400

seq1  TAGGACTCAATTTGCATGTCATTGAAGTATACAATCCCTATTTGTGATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACTCAATTTGCATGTCATTGAAGTATACAATCCCTATTTGTGATGA  450

seq1  TAATCAAGACTAAGATTCTCAGTACAACATATGTTTTGAGTACTGAGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAGACTAAGATTCTCAGTACAACATATGTTTTGAGTACTGAGAAC  500

seq1  AGGGCAGAAACTTTAAGAGCCACTGTATCTCCATATAATCAAGTAAATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGAAACTTTAAGAGCCACTGTATCTCCATATAATCAAGTAAATTG  550

seq1  CTATAACATTAGCCAAGTACTTAGAAGATATCAGTCAATGAAATAAAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACATTAGCCAAGTACTTAGAAGATATCAGTCAATGAAATAAAGGC  600

seq1  CTGTGACGTGTATTAGATTGAAAGACTAATGAAAAAAAATCACACAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACGTGTATTAGATTGAAAGACTAATGAAAAAAAATCACACAAGGA  650

seq1  GTTCAACGTAAATGTAACGTAAATCACATTATTTTTCCCCATTTTTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACGTAAATGTAACGTAAATCACATTATTTTTCCCCATTTTTTCTT  700

seq1  TTGTTTTGAGAAAGGGTCTTGCTGTAGCCCTCCCTGGCTGCCTCAGAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGAGAAAGGGTCTTGCTGTAGCCCTCCCTGGCTGCCTCAGAACT  750

seq1  CATTAGCTCTTGCTGGCCTTGCATTCAGGTATCCGCCTACTTTTGCTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCTCTTGCTGGCCTTGCATTCAGGTATCCGCCTACTTTTGCTTCC  800

seq1  AAGCACTAGGGCATTAAAGATGAGTGCAACCATGTCCAGTTTTTCCTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTAGGGCATTAAAGATGAGTGCAACCATGTCCAGTTTTTCCTTCT  850

seq1  GATTTTCATTTGAGTCATTGATTTGCCACAAAACAAAAAATGTGTAAATG  900
      || ||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GA-TTTCATTTGAGTCATTGATTTGCCACAAAAC-AAAAATGTGTAAATG  898

seq1  TATTTTTAGTGTACATATAGTAGATAAAACTGCTACTATATGGCAAATAT  950
      ||||||| ||| ||||||||   |||||||||||||||||||| ||||||
seq2  TATTTTT-GTGGACATATAGAGAATAAAACTGCTACTATATGG-AAATAT  946

seq1  T-GTTGATTGGAAAATATTGTAATTATTCTCAGTTCTTAAAGTAACTGAC  999
      | |||  ||| |||| |||||||||| |||| ||||||||   |||||||
seq2  TGGTTATTTGAAAAAAATTGTAATTA-TCTCCGTTCTTAA--GAACTGAC  993

seq1  CTAAAAGACTTTTATGAAGTGAAGAAATTCTTTA-GCTTAAGTCTGCAGA  1048
      || ||||||||||||| |  | |||||| |||||  |||  |||||||||
seq2  CTCAAAGACTTTTATGTA--GGAGAAATACTTTATTCTT--GTCTGCAGA  1039

seq1  CCCAGATTTCTCAATGAACAGATTAGAAGAAGTTCTGGTTAGTAATC  1095
      | | ||| | || ||||| ||| || ||| |||||||||||||||||
seq2  CTC-GATAT-TCTATGAA-AGAATAAAAG-AGTTCTGGTTAGTAATC  1082