MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-170G17
Chromosome	X (Build37)
Map Location	15,414,560 - 15,415,740
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC668991, 4930403L05Rik
Downstream gene	LOC100043949, LOC100043950, Cypt6, LOC100038939, LOC668993, Maoa, Maob
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC668991 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668991
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins pseudo : _no_value

name	4930403L05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67395 MGI:1914645
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043949 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043949
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC100043950 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043950
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	Cypt6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66742 MGI:3616444
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100038939 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038939
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC668993 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668993
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 22 Proteins pseudo : _no_value

name	Maoa (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17161 MGI:96915
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Maob (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109731 MGI:96916
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930403L05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142383460 GeneID:67395 MGI:1914645
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930403L05 gene transcript_id : NM_026128.2

name	Cypt6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114842378 GeneID:66742 MGI:3616444
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cysteine-rich perinuclear theca 6 transcript_id : NM_025738.2

name	LOC100038939 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270941 GeneID:100038939
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hypothetical protein LOC100038939, transcript variant 1 transcript_id : XM_001471577.1

name	LOC100038939 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270939 GeneID:100038939
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hypothetical protein LOC100038939, transcript variant 2 transcript_id : XM_001471579.1

name	Maoa (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84579838 GeneID:17161 MGI:96915
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : monoamine oxidase A transcript_id : NM_173740.2

name	Maob (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27370153 GeneID:109731 MGI:96916
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : monoamine oxidase B transcript_id : NM_172778.1

name	4930403L05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385638 CCDS:CCDS30031.1 GeneID:67395 MGI:1914645
definition	GO_function : GO:0004864 - protein phosphatase inhibitor activity [Evidence IEA] GO_process : GO:0009966 - regulation of signal transduction [Evidence IEA] codon_start : 1 note : novel gene similar to protein phosphatase 1 regulatory subunit 2 Ppp1r2 product : type 1 protein phosphatase inhibitor protein_id : NP_080404.1

name	Cypt6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114842379 GeneID:66742 MGI:3616444
definition	GO_component : GO:0001669 - acrosome [Evidence IDA] codon_start : 1 note : basic protein CKT1R3; cysteine-rich postacrosomal PT protein; cysteine-rich perinuclear theca protein 5; cysteine-rich perinuclear theca protein 1; cysteine-rich perinuclear theca protein 6; cysteine-rich postacrosomal perinuclear theca protein; cysteine-rich perinuclear theca 1 product : cysteine-rich perinuclear theca 5 protein_id : NP_080014.2

name	LOC100038939 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270942 GeneID:100038939
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_001471627.1

name	LOC100038939 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270940 GeneID:100038939
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_001471629.1

name	Maoa (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84579839 CCDS:CCDS30033.1 GeneID:17161 MGI:96915
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence TAS] [Evidence IDA] GO_function : GO:0008131 - amine oxidase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0006584 - catecholamine metabolism [Evidence IEA]; GO:0042420 - dopamine catabolism [Evidence IDA]; GO:0006118 - electron transport [Evidence IEA]; GO:0042135 - neurotransmitter catabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : monoamine oxidase A protein_id : NP_776101.2

name	Maob (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370154 GeneID:109731 MGI:96916
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005743 - mitochondrial inner membrane [Evidence IDA] codon_start : 1 exception : mismatches in translation product : amine oxidase (flavin-containing) protein_id : NP_766366.1

name	LOC100043949 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043949
definition	number : 3 pseudo : _no_value

name	LOC100043949 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043949
definition	number : 2 pseudo : _no_value

name	LOC100043949 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043949
definition	number : 1 pseudo : _no_value

name	LOC100043950 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043950
definition	number : 1 pseudo : _no_value

name	LOC668991 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149270997 GeneID:668991
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins product : similar to ribosomal protein L6 pseudo : _no_value transcript_id : XR_033255.1

name	LOC668993 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149270998 GeneID:668993
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 22 Proteins product : similar to casein kinase II alpha subunit pseudo : _no_value transcript_id : XR_033273.1

clone name	MSMg01-090I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-068A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-273N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-408G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124O11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-237L09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-408M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-167O06
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-482C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-172E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-303F07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083D06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349N24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-437C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-343C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-234F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-325D21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-546G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-513H05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-425J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004G03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-291B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262K13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-319H12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151H10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-128N12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018H24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129C23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151B14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-334N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304K16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257C11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123A02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-049F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-204O05
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-170G17.b	B6Ng01-170G17.g
ACC	DH961135	DH961136
length	1,164	993
definition	DH961135\|Mus musculus domesticus DNA, BAC clone: B6Ng01-170G17, 5' end.	DH961136\|Mus musculus domesticus DNA, BAC clone: B6Ng01-170G17, 3' end.
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	gaattctaggcaggaacccaaagggaagagttgaagaagagggcacaaaa gagtgctgcttctggcttgctcaggtattttcctgtagaaaatccagggt ctgtatcagtgaccttcggcctctaagttcaataactagtcaagagtatg ttcccaggatagcctactaatattcctttccccagataatgcttgtgtca agttgacaaaaagtaaccaggacaccatctatatctattaatgaactatt cacaatagccaggaagtaaaactatcagcagataggtgaataaaaaaatg tggaacttatatacaatgaaattctatgtgactaattggttcaacttaag ataagcagactcagaatgagaaatgtcacattttcctcacattaaaacta tatgtgtgtgttgttttatgcatgtgtgttttcaggtcatgaatgtagaa aggtgatcgtgaaaggcaagagagagacttataagaagtgggagacagag taaaatggaatacatattttaggaacagagaagttgaaactaagagtatt aaaaagtagaatcaaatgaagaaagggaggagtcactggaaggggtattg gataaaagaataaatgagaacaaagtatgatatatatacacatacatata tatgtatacatatatacacatatatgcgtacatatatacatacacacaca caaacacacacacacacacacacacacacatatatatatatatatatata tacacatacatatatacatacatatacatattcttgtggactatatattc cataatgacacctattacatttaatgttaatctaaagttaatctttgaaa ctgacaaaagaaaatacaaggaacttacagctaaatcattagtaatgatc aatagtttagaaagctcctggtaaaatacaaatacgcccgctacattgca tttaactgtggaaaggaagaaaaataatttccttctactttctcagaact tgacttttcctcctgaaagccgaattataaaggaagcaccaagatatttt accatgcttccgggaatagatattcttataaccaaaaagctcccagagac attgactgaatggtttgaacctgaatgtatagaactagaggtacagtgtt ttatctcaacacta	gaattcttttgtagggtttttatctccaacgttgcctcactttgtgtttt ctttattgtttctacttccctttttaggtcttatatagttttgttaaatt acatcacctgtttggttgtgttttcctgtttttctttaaggacttctacc tctttagcagtattctcctgtatttgtttaagtgagttaaagtccttctt gatgccctctattattatcatgagatatgcttttaaatctgagtctagct tttcgggtgtgttgggctatccaggactgtctgaggtgggagtgctgaat tctgatgatggtgagtggtcttggtttctgttagtaagattcttatgttt gccttatgccatctggttatttctggaggtatttgttatagttgtctttg gtcggagcttattcctcctgtgattcttttagcctctgtcagcagatatg ggagtctagctctctcctgattttcagtggtcagagtactctctgcaggc aagctctcctcttacagtaaaggtgcacagatatcttgcattcaggcctg cctactggctgaagatgaaggcctgaagcagggcctgccccagaagctgt gttacttctgcctgtcccagaagatgtgtagcttctgtagtctgcactct cacctgctcatactagtctctgagagttccaggacgagaaattgctcccc caggtgctctgacaaagttctcccaggtggggcagacacctctcctttgg cggggaaggtgccagcatgtctggagcctgaaaggggtctgccccagaag ctgtcttgcttctgctgtaccaaagatgtgttgcttctgtagtcagcact cttcacctgtgcagacaatttctgaaagaaacaggacaaaatggttcctc cagggttctcgaaacctcccagaaggggacaccaggttttttttttagac aacaggaacttatattaataatacatgggggtgtagactaggt
quality values	Open. Hide. 57 42 23 26 57 47 50 36 61 61 45 43 61 61 61 50 61 61 61 42 61 61 61 61 53 12 10 12 20 16 9 19 8 28 15 17 28 22 19 49 61 61 61 61 55 61 55 55 61 61 55 61 61 49 61 61 61 61 61 61 61 61 61 61 61 61 61 27 43 30 27 32 19 13 28 21 35 59 55 55 59 61 61 59 59 61 61 61 61 61 61 61 61 59 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 59 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 59 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 55 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 52 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 52 55 55 55 55 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 47 61 55 55 61 61 61 61 55 61 55 61 61 61 61 50 61 50 61 50 61 47 61 61 61 61 61 61 61 61 61 61 53 61 61 61 61 53 61 43 61 61 61 52 61 50 61 61 61 61 61 61 61 61 47 53 61 53 61 50 61 61 61 61 61 45 61 61 61 50 52 61 61 52 45 50 22 16 38 45 61 61 50 61 61 50 61 61 61 53 61 53 42 42 50 61 61 61 61 61 61 61 53 61 47 41 53 50 61 61 61 61 53 61 45 61 61 61 50 61 61 61 27 57 57 42 53 50 47 47 53 53 53 53 57 38 57 47 47 42 40 36 57 57 47 53 45 53 57 57 57 50 57 53 45 47 57 53 52 57 53 42 57 50 50 27 53 42 40 42 53 50 57 47 35 52 53 53 53 50 47 43 47 39 53 45 57 53 57 34 47 53 53 53 53 53 36 42 53 53 50 50 38 15 53 45 53 45 53 50 53 38 52 38 53 57 53 50 41 53 53 53 52 28 57 30 57 38 53 50 57 52 57 30 57 53 53 42 53 45 57 37 52 31 37 23 53 43 57 30 53 37 43 26 53 28 57 36 57 24 57 42 57 34 57 27 52 30 53 34 52 43 46 26 57 53 57 40 57 45 57 40 57 39 57 39 57 40 57 33 53 44 53 52 57 37 38 19 53 23 53 34 37 18 31 35 53 33 53 31 41 19 52 36 52 19 57 52 57 20 43 24 57 27 46 23 52 33 34 53 24 53 34 38 34 40 35 40 44 31 36 41 33 36 45 35 42 40 30 31 52 37 48 27 53 53 33 44 28 21 32 36 27 35 53 21 27 40 33 40 15 41 47 19 19 44 37 41 57 33 20 21 29 24 29 33 40 14 57 46 29 33 53 33 28 32 37 26 19 34 47 46 48 15 32 45 46 30 32 28 31 12 30 28 51 31 27 30 29 38 30 38 27 25 33 39 28 51 27 28 29 28 26 38 28 24 30 38 17 18 30 25 27 21 13 30 29 29 31 33 51 33 31 23 44 51 29 25 12 22 24 29 28 39 33 31 43 45 45 14 15 21 13 21 31 17 21 6 10 4 17 29 4 4 6 4 5 5 4 12 21 29 6 11 19 30 24 7 17 6 15 25 10 21 28 16 43 8 29 24 30 9 8 26 25 31 41 13 8 7 5 19 24 14 23 7 15 17 9 11 12 13 6 41 29 10 9 16 7 18 46 17 12 29 20 28 15 7 13 17 34 5 10 5 12 12 14 11 11 11 36 6 4 4 4 7 5 9 13 6 9 17 27 38 29 20 23 17 7 10 6 7 10 5 7 32 9 13 6 5 6 17 8 5 5 7 4 10 6 8 6 9 5 5 5 6 13 9 10 30 6 6 8 7 6 5 11 9 19 12 5 13 8 7 28 10 6 11 6 13 4 5 5 8 7 22 13 9 11 5 10 4 9 7 10 23 6 6 10 8 10 7 9 15 13 9 8 8 17 5 6 19 15 14 12 6 7 3 9 8 14 6 9 11 5 5 12 12 31 14 10 8 6 16 7 3 4 10 5 11 6 5 10 36 31 12 9 12 4 4 8 5 6 5 5 9 4 3	Open. Hide. 61 61 36 36 61 9 12 15 21 10 5 15 7 10 11 25 20 31 31 31 52 61 49 61 61 61 49 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 59 23 23 32 21 25 29 18 35 21 32 32 36 37 55 59 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 44 59 61 61 61 61 59 59 59 59 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 59 59 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 59 59 59 59 59 52 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 52 61 61 55 61 55 61 61 55 55 55 61 61 61 55 61 47 39 61 55 61 61 61 61 61 50 61 61 61 61 61 61 61 55 55 55 61 61 41 61 43 55 61 61 61 61 61 55 61 61 61 61 61 61 61 55 61 50 55 55 55 55 55 61 43 61 61 61 52 47 53 61 61 61 53 53 53 45 61 50 53 61 53 61 61 61 50 61 61 61 47 47 61 50 31 50 35 42 47 50 52 47 50 52 42 61 61 53 50 35 52 53 52 61 53 61 61 42 61 53 52 61 53 53 61 53 61 53 61 61 61 61 47 42 61 61 33 39 39 61 42 47 50 61 47 47 47 45 50 50 53 53 50 53 53 53 53 38 53 36 47 53 47 45 47 25 47 47 53 53 52 38 43 47 38 53 47 32 46 47 53 50 47 47 46 47 28 53 42 23 53 53 53 43 53 50 45 39 27 50 52 52 38 37 36 43 45 52 45 32 34 42 32 19 53 53 26 30 26 47 26 47 35 50 32 53 57 37 39 52 53 32 39 50 47 45 39 41 52 29 52 53 50 53 50 27 45 52 52 57 50 53 52 40 45 50 53 50 50 34 52 52 38 41 57 53 57 28 57 42 42 53 37 47 35 30 42 32 16 24 53 33 47 43 44 28 52 38 27 52 42 17 9 21 33 30 24 50 34 53 36 34 30 50 39 24 16 27 36 38 32 34 47 28 36 21 52 47 30 15 23 30 37 57 53 50 30 31 20 37 23 23 37 33 27 23 45 19 29 12 47 52 40 31 27 27 41 53 33 40 53 6 25 18 37 31 34 29 17 33 21 36 40 29 32 35 26 27 38 23 35 30 37 33 40 57 51 18 57 53 26 11 7 30 24 21 30 23 33 29 12 27 22 8 13 31 24 32 23 14 25 20 17 22 8 10 16 8 6 9 11 10 11 22 29 8 6 13 9 13 7 10 23 10 27 10 29 13 17 25 14 10 15 19 28 13 16 24 16 7 13 18 24 21 12 7 12 8 9 29 25 16 8 13 11 14 10 11 18 10 19 9 7 9 8 9 13 5 16 5 21 9 24 16 9 9 7 10 12 18 10 8 7 10 11 7 13 14 8 8 13 17 10 17 7 7 23 10 25 22 8 11 12 8 7 20 23 6 13 17 12 20 30 12 12 5 7 10 18 24 5 8 11 5 10 12 14 5 4 10 20 29 28 30 7 29 19 19 11 12 8 5 11 9 8 8 9 5 14 10 9 17 9 12 11 9 7 17 7 8 7 7 6 12 12 15 10 5 8 6 9 11 30 28 22 6 8 7 5 5 5 5 7 5 5 5 5

Alignment Information

BAC End 1

BAC End 2

seq1: chrX_15414560_15415740
seq2: B6Ng01-170G17.b_48_1211 (reverse)

seq1  TAGTGTTGAGATTAAAAACCTGTACCTCTAGGTTCTATATCATTCAGGTT  50
      ||||||||||| |||||  ||||||||||| |||||||| ||||||||||
seq2  TAGTGTTGAGA-TAAAACACTGTACCTCTA-GTTCTATA-CATTCAGGTT  47

seq1  CAAA-CATTCAAGTTCAAATGTTCTTTGGG-GCTTCTTTTCGTTATTAGG  98
      |||| ||||| |||   |||| ||| |||| |||  |||| ||||| || 
seq2  CAAACCATTC-AGT--CAATG-TCTCTGGGAGCT--TTTTGGTTATAAGA  91

seq1  ATATCTATTTCCTGTAGCATTTGTTTAATATATCTTTGTGCTTTCCTTTT  148
      ||||||||| || | |||||     ||| ||||||| |||| ||||||| 
seq2  ATATCTATTCCCGGAAGCAT---GGTAAAATATCTTGGTGC-TTCCTTT-  136

seq1  ATTAATCTGTCTTTTTCTAGGAGTAAAAGTCAAGTTCTGAGAAAGGTAGA  198
        ||||  | ||||    ||||| |||||||||||||||||||| |||||
seq2  -ATAATTCGGCTTT---CAGGAGGAAAAGTCAAGTTCTGAGAAA-GTAGA  181

seq1  AGGAAAATATTTTTCTTCC-TTCCACAGTTAAATGCAATTTTTTAATGAG  247
      |||||| |||||||||||| |||||||||||||||||| | |     | |
seq2  AGGAAATTATTTTTCTTCCTTTCCACAGTTAAATGCAA-TGTAGCGGGCG  230

seq1  TATTTGTATTTTACCAGGAGCTTTCTAAACTATTGATCATTACTAATGAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTATTTTACCAGGAGCTTTCTAAACTATTGATCATTACTAATGAT  280

seq1  TTAGCTGTAAGTTCCTTGTATTTTCTTTTGTCAGTTTCAAAGATTAACTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGTAAGTTCCTTGTATTTTCTTTTGTCAGTTTCAAAGATTAACTT  330

seq1  TAGATTAACATTAAATGTAATAGGTGTCATTATGGAATATATAGTCCACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTAACATTAAATGTAATAGGTGTCATTATGGAATATATAGTCCACA  380

seq1  AGAATATGTATATGTATGTATATATGTATGTGTATATATATATATATATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATGTATATGTATGTATATATGTATGTGTATATATATATATATATA  430

seq1  TATATGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTATGTATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTATGTATA  480

seq1  TATGTACGCATATATGTGTATATATGTATACATATATATGTATGTGTATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACGCATATATGTGTATATATGTATACATATATATGTATGTGTATA  530

seq1  TATATCATACTTTGTTCTCATTTATTCTTTTATCCAATACCCCTTCCAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCATACTTTGTTCTCATTTATTCTTTTATCCAATACCCCTTCCAGT  580

seq1  GACTCCTCCCTTTCTTCATTTGATTCTACTTTTTAATACTCTTAGTTTCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTCCCTTTCTTCATTTGATTCTACTTTTTAATACTCTTAGTTTCA  630

seq1  ACTTCTCTGTTCCTAAAATATGTATTCCATTTTACTCTGTCTCCCACTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCTGTTCCTAAAATATGTATTCCATTTTACTCTGTCTCCCACTTC  680

seq1  TTATAAGTCTCTCTCTTGCCTTTCACGATCACCTTTCTACATTCATGACC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGTCTCTCTCTTGCCTTTCACGATCACCTTTCTACATTCATGACC  730

seq1  TGAAAACACACATGCATAAAACAACACACACATATAGTTTTAATGTGAGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACACACATGCATAAAACAACACACACATATAGTTTTAATGTGAGG  780

seq1  AAAATGTGACATTTCTCATTCTGAGTCTGCTTATCTTAAGTTGAACCAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTGACATTTCTCATTCTGAGTCTGCTTATCTTAAGTTGAACCAAT  830

seq1  TAGTCACATAGAATTTCATTGTATATAAGTTCCACATTTTTTTATTCACC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACATAGAATTTCATTGTATATAAGTTCCACATTTTTTTATTCACC  880

seq1  TATCTGCTGATAGTTTTACTTCCTGGCTATTGTGAATAGTTCATTAATAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCTGATAGTTTTACTTCCTGGCTATTGTGAATAGTTCATTAATAG  930

seq1  ATATAGATGGTGTCCTGGTTACTTTTTGTCAACTTGACACAAGCATTATC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGATGGTGTCCTGGTTACTTTTTGTCAACTTGACACAAGCATTATC  980

seq1  TGGGGAAAGGAATATTAGTAGGCTATCCTGGGAACATACTCTTGACTAGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAAGGAATATTAGTAGGCTATCCTGGGAACATACTCTTGACTAGT  1030

seq1  TATTGAACTTAGAGGCCGAAGGTCACTGATACAGACCCTGGATTTTCTAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAACTTAGAGGCCGAAGGTCACTGATACAGACCCTGGATTTTCTAC  1080

seq1  AGGAAAATACCTGAGCAAGCCAGAAGCAGCACTCTTTTGTGCCCTCTTCT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATACCTGAGCAAGCCAGAAGCAGCACTCTTTTGTGCCCTCTTCT  1130

seq1  TCAACTCTTCCCTTTGGGTTCCTGCCTAGAATTC  1181
      ||||||||||||||||||||||||||||||||||
seq2  TCAACTCTTCCCTTTGGGTTCCTGCCTAGAATTC  1164

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