BAC Information

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BAC

Clone NameB6Ng01-175B12
ChromosomeX (Build37)
Map Location 119,510,099 - 119,511,106
singlet/doubletsinglet
Overlap geneNap1l3
Upstream geneEG245575, LOC100039544
Downstream gene3110007F17Rik, LOC100039751, LOC100039763
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175B12.bB6Ng01-175B12.g
ACCGA002992GA002993
length1,1921,000
definitionB6Ng01-175B12.b B6Ng01-175B12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctgaacatgataaaaacaatctacagcaatcca
atagccaacatcaaagtaaatggtgagaagctggaagcaatcccactaaa
atcagggactagacaaggctgtccactttcgctctacctattcaacattg
tacttgaagtcctagccagagcaattaaacaacaaaaggagatcaagggg
atacaaattggaaaggaagaagtccaaataccactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaagcc
tgataaacagcttcaatgaagtagccggatataaaattaactcaaacaag
tcaatggcctttctgtacacaaaagataaacagactgagaaagaaattag
ggaaagaacacccttctcaatagtcacaaacaatataaaataccttggca
tgactctaactaaggaagtgaaagatctgtgtgataagaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattagaaagggcaatcagcagattcatctggaataacaaaaaaac
taggatagcaaaaacttctcaaggataaaggaacctctggtagaatcacc
atgccggacctaaaactgcactacagagcaattgtgataaaaactgcatg
gtactggtatagtgacaaacaagtagaccaatggaacagaattgaagacc
cagagatgaacccacacacctatggtcacttgatctttgacaagggagct
aaaaccatccagtggaaaaaagacagcattttcaacaaatggtgctggca
caaatggaggttatcatgtagaagaatgcgaattgatccatttctatctc
cttgtactaaggtcaaatctacatggattaaagaactccacataaaacca
gagacactgaaacttatagaaggagaaagtaggaaaggctcgaagacatg
ggtacaggggaaatctgattagaaacaacatggtcgtggctgagatcgag
actgatattggactcataaaattgctaggcttcctgcccaag

gaattccattcacattcttcctctgtaggctcatattctgcatttatgat
ctgaaaacgcttatcatatagaggcttattgagttcagcatactttcttt
caagatcatgaattgcccttaagaacaaggtgtctaccttgtcacactca
ttctgaatatttctgagtgcctgcacccgatttcttacggcttggggcag
cttatccaagaaaagtttcccggagggacgtcgctgggcccttctggaag
gctcaggtaccctcttctttcggttcaaatgactgccattgctgctgctg
ccactgctaccgctactgctactgctgctgctgctgctgctgctgctact
gctgctgctgctactgctgctgccgctgctgctgctgccgctgctgctgc
aactattggtactgctagagctattgctgtcagattcatccccagaatca
caagctgtgctagccatcgcctcttcagcaaccccatgggcaccaggttc
tgtgaccattttaggatccgcttctgccatactgttagccccgtacacct
atttaaggtggtgacaacagcagagatcgtgcacccagagacggacagaa
aaggactcacggatgctccagtggcggcggcggtggggggcggtggcagc
aggggcgaaggccggagaaggtcaggcggcggagactgcagcggcggcgg
ccgggatccagtggcaacacggactgcagcagctgtggcagtggcgcgat
gggggcggggtcacagaggtggcgcgcaggaaccgcagcaggggaagcag
cctggagccttagctacgaggcttgtcaggccgcaatggacctgcgccga
gacctgctgcagtccagtgacgcagtaccggactcagaaccgtctctggg
ttaggatgggcagcccctcccttgttgacagcctctgttaaattcgtccc
aggatgcttcagttcacttctatttgcgagaggactggattgactagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_119510099_119511106
seq2: B6Ng01-175B12.g_66_1065

seq1  GAATTCCATTCACATTCTTCCTCTGTAGGCTCATATTCTGCATTTATGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCACATTCTTCCTCTGTAGGCTCATATTCTGCATTTATGAT  50

seq1  CTGAAAACGCTTATCATATAGAGGCTTATTGAGTTCAGCATACTTTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAACGCTTATCATATAGAGGCTTATTGAGTTCAGCATACTTTCTTT  100

seq1  CAAGATCATGAATTGCCCTTAAGAACAAGGTGTCTACCTTGTCACACTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCATGAATTGCCCTTAAGAACAAGGTGTCTACCTTGTCACACTCA  150

seq1  TTCTGAATATTTCTGAGTGCCTGCACCCGATTTCTTACGGCTTGGGGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAATATTTCTGAGTGCCTGCACCCGATTTCTTACGGCTTGGGGCAG  200

seq1  CTTATCCAAGAAAAGTTTCCCGGAGGGACGTCGCTGGGCCCTTCTGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCCAAGAAAAGTTTCCCGGAGGGACGTCGCTGGGCCCTTCTGGAAG  250

seq1  GCTCAGGTACCCTCTTCTTTCGGTTCAAATGACTGCCATTGCTGCTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGTACCCTCTTCTTTCGGTTCAAATGACTGCCATTGCTGCTGCTG  300

seq1  CCACTGCTACCGCTACTGCTACTGCTGCTGCTGCTGCTGCTGCTGCTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCTACCGCTACTGCTACTGCTGCTGCTGCTGCTGCTGCTGCTACT  350

seq1  GCTGCTGCTGCTACTGCTGCTGCCGCTGCTGCTGCTGCCGCTGCTGCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGCTGCTACTGCTGCTGCCGCTGCTGCTGCTGCCGCTGCTGCTGC  400

seq1  AACTATTGGTACTGCTAGAGCTATTGCTGTCAGATTCATCCCCAGAATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTGGTACTGCTAGAGCTATTGCTGTCAGATTCATCCCCAGAATCA  450

seq1  CAAGCTGTGCTAGCCATCGCCTCTTCAGCAACCCCATGGGCACCAGGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGTGCTAGCCATCGCCTCTTCAGCAACCCCATGGGCACCAGGTTC  500

seq1  TGTGACCATTTTAGGATCCGCTTCTGCCATACTGTTAGCCCCGTACACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCATTTTAGGATCCGCTTCTGCCATACTGTTAGCCCCGTACACCT  550

seq1  ATTTAAGGTGGTGACAACAGCAGAGATCGTGCACCCAGAGACGGACAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGGTGGTGACAACAGCAGAGATCGTGCACCCAGAGACGGACAGAA  600

seq1  AAGGACTCACGGATGCTCCAGTGGCGGCGGCGGTGGGGGGCGGTGGCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTCACGGATGCTCCAGTGGCGGCGGCGGTGGGGGGCGGTGGCAGC  650

seq1  AGGGGCGAAGGCCGGAGAAGGTCAGGCGGCGGAGACTGCAGCGGCGGCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCGAAGGCCGGAGAAGGTCAGGCGGCGGAGACTGCAGCGGCGGCGG  700

seq1  CCGGGATCCAGTGGCAACACGGACTGCAGCAGCTGTGGCAGTGGCGCGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGATCCAGTGGCAACACGGACTGCAGCAGCTGTGGCAGTGGCGCGAT  750

seq1  GGGGGCGGGGTCACAGAGGTGGCGCGCAGGAAACCGCAGCAGGGGAAGCA  800
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGGGGCGGGGTCACAGAGGTGGCGCGCAGG-AACCGCAGCAGGGGAAGCA  799

seq1  GCCTGGAGCCTTAGCTACGAGGCTTGTCAGGCCGCAATGGACCTGCGCCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAGCCTTAGCTACGAGGCTTGTCAGGCCGCAATGGACCTGCGCCG  849

seq1  AGACCTGCTGCAGTCCAGTGACGCAGTACCGGACTCAGAACCGTCTCCTG  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGACCTGCTGCAGTCCAGTGACGCAGTACCGGACTCAGAACCGTCT-CTG  898

seq1  GGTTAGGATGGGCAGCCCCTCCCTTGTTGACAGCCCTCTGGTTAAATTCG  950
      ||||||||||||||||||||||||||||||||| ||||| ||||||||||
seq2  GGTTAGGATGGGCAGCCCCTCCCTTGTTGACAG-CCTCT-GTTAAATTCG  946

seq1  TTCCCAGGATGCCTTCAGTTCACTCCTTATTTGCGGAGAGGACTTGATTG  1000
       |||||||||| |||||||||||| | ||||||| ||||||||| |||||
seq2  -TCCCAGGATG-CTTCAGTTCACTTC-TATTTGC-GAGAGGACTGGATTG  992

seq1  ACTAGTGT  1008
      ||||||||
seq2  ACTAGTGT  1000


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