BAC Information

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BAC

Clone NameB6Ng01-175N04
ChromosomeX (Build37)
Map Location 151,492,035 - 151,492,826
singlet/doubletsinglet
Overlap geneMagea5
Upstream geneLOC100040020, EG546397, OTTMUSG00000019256, EG434874, LOC635580, EG625767, LOC270665, LOC100040076, 4930524N10Rik, EG434879, LOC667313, 4930542N07Rik, EG434881, LOC100040899, LOC667331, LOC100040925, LOC100040937, Magea6, Magea3, LOC626034, Magea8, Magea2
Downstream geneMagea1, 1700042B14Rik, LOC245676, Amd-ps1, LOC667369, Sat1, Acot9, LOC667383, Prdx4, LOC667394, Ptchd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175N04.bB6Ng01-175N04.g
ACCGA003527GA003528
length796661
definitionB6Ng01-175N04.b B6Ng01-175N04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatcttcacatttatgggatccatctgcaacatatggggagacat
gttgtaggaattagccatttttgtttttttttcctattttaatgtagtgt
attgagatagagagatagttcagtggttatcagtacttgttgttcctgta
ggttcaattccctgccacaaatgttgcttcataactccagttccagggca
tctggccttatttactgacttgtatgtgcaccagtaatatatgtgttgtg
cttaaataaacattcagtcacacatccatgtacattaagtaaaaagaatt
ctggtggttatctggagacagaggaggagctgagccatgcatgatgccaa
ggtgacagctatggtttgagttctgaagacctgttccagatttagtcacc
ccaaattgaaccagttctacttatttagccccaagttcattaagtaggaa
caatcaagagtactgggctccaagttagacaacatcttcagcataaagtg
gggtatgtaagtcccacccttagctgtggagctctatataatttatagcc
ccataggagagagtttgctttccttacatgggcagtgtctggttagttta
tcatgcttcactggatggccacaggtccaagtgcatttcaggcattatca
atttgactccatgggttaaaaaacacgagattgcaagtattggtaagaat
agaagtgggtggaacttgtaggacttgggagaattttggggacatataac
catgcctggaatgtttggtaaggtagagtatttcaggatccagaga
gaattccagtgctatattttacaggtaggaagagagtggacagccttgtc
tattccctaattctagtagaattgcttcaagttcctctctgtttagcttg
atataggctactggtttgcagtatatggcttttgctatatttagatatgg
gcatggaattgctgatcattccaaaacttttaatatgaaggagagttaga
atacattccatatacagtactcaaagccagaatctattgtggttgctggg
acgtgcttactgataggagcctgatatgactgtctcctgagatgctctgg
caaagcttgacaaatatagaggattctcacagccaaactttgggctgagc
atggggtcccagataataaagttgtaaatgggcagatggagcagtctgca
gccacatgattggagccacagtgtcacaatccagatccccaagagttcct
ggaggaaggattaccaatcaaatagtatatatgtaggaaataatggcata
tgaggtagaggatggacttgctggacatcagtggaagaataggcccttgg
gcctgtgggggtttgatgccccagtgtaggagaatctcagagatggaagg
tacaagtgggtagatatgaggaggagcaccctcattgagacaggtggagg
gagggagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_151492035_151492826
seq2: B6Ng01-175N04.b_48_843 (reverse)

seq1  TCTCTGGGTCCTGAAATACTCTACCTTACC-AACATTCCAGGCATGGTTT  49
      ||||||| |||||||||||||||||||||| |||||||||||||||||| 
seq2  TCTCTGGATCCTGAAATACTCTACCTTACCAAACATTCCAGGCATGGTTA  50

seq1  TATGTCCC--AAATTCTCCCAAGTCCTCCAAGTTCCACCCACTTCTATTC  97
      ||||||||  ||||||||||||||||| ||||||||||||||||||||||
seq2  TATGTCCCCAAAATTCTCCCAAGTCCTACAAGTTCCACCCACTTCTATTC  100

seq1  TTACCAATACTTGCAATCTCGTGTTTTTTAACCCATGGAGTCAAATTGAT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAATACTTGCAATCTCGTGTTTTTTAACCCATGGAGTCAAATTGAT  150

seq1  AATGCCTG-AATGCACTTGGACCTGTGGCCATCCAGTGAAGCATGATAAA  196
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTGAAATGCACTTGGACCTGTGGCCATCCAGTGAAGCATGATAAA  200

seq1  CTAACCAGACACTGCCCATGTAAGGAAAGCAAACTCTCTCCTATGGGGCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCAGACACTGCCCATGTAAGGAAAGCAAACTCTCTCCTATGGGGCT  250

seq1  ATAAATTATATAGAGCTCCACAGCTAAGGGTGGGACTTACATACCCCACT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTATATAGAGCTCCACAGCTAAGGGTGGGACTTACATACCCCACT  300

seq1  TTATGCTGAAGATGTTGTCTAACTTGGAGCCCAGTACTCTTGATTGTTCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTGAAGATGTTGTCTAACTTGGAGCCCAGTACTCTTGATTGTTCC  350

seq1  TACTTAATGAACTTGGGGCTAAATAAGTAGAACTGGTTCAATTTGGGGTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAATGAACTTGGGGCTAAATAAGTAGAACTGGTTCAATTTGGGGTG  400

seq1  ACTAAATCTGGAACAGGTCTTCAGAACTCAAACCATAGCTGTCACCTTGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATCTGGAACAGGTCTTCAGAACTCAAACCATAGCTGTCACCTTGG  450

seq1  CATCATGCATGGCTCAGCTCCTCCTCTGTCTCCAGATAACCACCAGAATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGCATGGCTCAGCTCCTCCTCTGTCTCCAGATAACCACCAGAATT  500

seq1  CTTTTTACTTAATGTACATGGATGTGTGACTGAATGTTTATTTAAGCACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTACTTAATGTACATGGATGTGTGACTGAATGTTTATTTAAGCACA  550

seq1  ACACATATATTACTGGTGCACATACAAGTCAGTAAATAAGGCCAGATGCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATATTACTGGTGCACATACAAGTCAGTAAATAAGGCCAGATGCC  600

seq1  CTGGAACTGGAGTTATGAAGCAACATTTGTGGCAGGGAATTGAACCTACA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTGGAGTTATGAAGCAACATTTGTGGCAGGGAATTGAACCTACA  650

seq1  GGAACAACAAGTACTGATAACCACTGAACTATCTCTCTATCTCAATACAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAACAAGTACTGATAACCACTGAACTATCTCTCTATCTCAATACAC  700

seq1  TACATTAAAATAGGAAAAAAAAACAAAAATGGCTAATTCCTACAACATGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAAAATAGGAAAAAAAAACAAAAATGGCTAATTCCTACAACATGT  750

seq1  CTCCCCATATGTTGCAGATGGATCCCATAAATGTGAAGATGAATTC  792
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCATATGTTGCAGATGGATCCCATAAATGTGAAGATGAATTC  796