BAC Information

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BAC

Clone NameB6Ng01-177F11
ChromosomeX (Build37)
Map Location 71,529,531 - 71,684,053
singlet/doubletdoublet
Overlap geneTaz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg
Upstream geneXlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1
Downstream geneEG628456, LOC628465, LOC100041484, LOC674920, EG245472, Olfr1326-ps1, Olfr1325, EG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573, LOC100041642, LOC667437, EG667446, LOC669291, Gab3, Dkc1, Mpp1, EG547412, 4930428E23Rik, EG667190, F8, LOC572559, LOC667218, Fundc2, Mtcp1, Brcc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177F11.bB6Ng01-177F11.g
ACCGA004639GA004640
length1,1111,182
definitionB6Ng01-177F11.b B6Ng01-177F11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,529,531 - 71,530,633)(71,682,879 - 71,684,053)
sequence
gaattcaaggaagctgtatttgcagtcccttctgaatctaccactcctgt
cagggagaacagtgtggtgttaccactttataatggcagtggggtacatg
tatagaaggctaagggttttgtttttgggagaacaaacagtggtaagatg
aggaggctcagattgaccactcagtacctttcacaaaccccttagtgtag
gggccatcttgaccccattctctagatagggctcagattctctagacaaa
gcttagaagtccaaggtcatagactaccatgtggcaaacttaagattcag
atccacattgccctttcatctgggtatgtagattccttttcaagcaaaga
atgaaagaaagggtggtctaaaaataagagaagagaaggttagagaatgt
cagaagggtagaagattgtatttccacctttctaagcattccagaagaga
ctatattattttgttgaatgatatagtctcagtgccatttcctctcagat
cctgctctgatatgtcagcattctgataatttacacctgtccctgactct
aagctcctttactctgcaaactcaaaagtcttgtgtgtatgcatctgttt
tcattctttaaaaaaaaaaagattaattttatgtgtgagcaccctgtttt
cagacacaccagaagaggccatcagatcccattacagatggctgtgagcc
accatgtggttgctggaaattggactcagactctttggaagagcctttgt
tcagtgctctgaactcctgagccatctctccagcccttttcatttttttc
ttttttctttcgttttcagtttgagggatagaacacagaggcttgtatat
ttttaggcatatactgtacctatgggcctatacagatagttctgttcttc
ttgaactgattctaggactttcttgcagttaaaagccgatctgagtgttt
ggagaactatctcagtggtttagagcactgcctgcctcttccaaaggacc
agagttccatttcccatcagtcacaatgccagctcatgccctgcatcggt
ttctcaggggtccctacacccttacatagacatacatgctgggcaaacat
aaaaattaaaa
gaattcatctctgcctctataccctcactgtaaaagctcatggtgtctta
cctctatcacccatatcttctgatcctggcctacagtaccccacagtttc
ccttaaactctagttccggtgttagcctcaacaccctggtacctccctgt
gtgctcattacaaagacaatgatggacatttccatgtgtctttgaggaag
ccactgacagcagatcatcccaactttgacaaggcagatctggactactg
ggcctgctcccctttggctttttctcacactgccctccccccaccaaccc
accaccagtgctctctgagcccaagtcaaactctcctccctcccacagga
caggagccccaacccactactccacaaacacaataactacctattgcact
gagaaggcctgttagcttcactaactatatggaggacagcagcaaggcag
tatgagaggcacaacagtacccatgcctgtaactaaatgatctcatgtgg
caacctaacccccttggcaaaagagagtgagtgacagtcccaagaccatt
agttgacaaagtcagtcaaactcacttttctgccagaattcagaaatact
ggtacatgcctggcagaggataccaacgtgaacaactcccaacagaaaca
tggaatccatagtctttaatgagaagtagttcatgagggctctgtgctat
tcacagggttgctgtggaatgtatccagtcttgttcacctaggactttct
gccttggtagaatcccactgcatatcagtctggatagtgagctcttgagt
gtggtctcaggggccctgcagtgcttcctaaagaataagctagatcccag
tatgatgttttgagtgaaaatgggcccccgtaggattctagagagtggaa
ttatttaaaggattaggataagtggcccttgttagagtaggtggtggcct
tgttaaaagaaggcggatcactgggatggactttgaggtttcagaatgct
caagctaggcctcactgggttactctctcttctgctgccttgcaaatccg
atgaagaactttcaagacactgtcagcatcatgttctgtcctgccttacc
attcatgctttgctaccattgacaatttatgaacttaaacctcttgaagt
gcagcagatagaacgcttcttataaaggttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_71529531_71530633
seq2: B6Ng01-177F11.b_49_1159

seq1  GAATTCAAGGAAGCTGTATTTGCAGTCCCTTCTGAATCTACCACTCCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGAAGCTGTATTTGCAGTCCCTTCTGAATCTACCACTCCTGT  50

seq1  CAGGGAGAACAGTGTGGTGTTACCACTTTATAATGGCAGTGGGGTACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGAACAGTGTGGTGTTACCACTTTATAATGGCAGTGGGGTACATG  100

seq1  TATAGAAGGCTAAGGGTTTTGTTTTTGGGAGAACAAACAGTGGTAAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAGGCTAAGGGTTTTGTTTTTGGGAGAACAAACAGTGGTAAGATG  150

seq1  AGGAGGCTCAGATTGACCACTCAGTACCTTTCACAAACCCCTTAGTGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCTCAGATTGACCACTCAGTACCTTTCACAAACCCCTTAGTGTAG  200

seq1  GGGCCATCTTGACCCCATTCTCTAGATAGGGCTCAGATTCTCTAGACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCATCTTGACCCCATTCTCTAGATAGGGCTCAGATTCTCTAGACAAA  250

seq1  GCTTAGAAGTCCAAGGTCATAGACTACCATGTGGCAAACTTAAGATTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGAAGTCCAAGGTCATAGACTACCATGTGGCAAACTTAAGATTCAG  300

seq1  ATCCACATTGCCCTTTCATCTGGGTATGTAGATTCCTTTTCAAGCAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACATTGCCCTTTCATCTGGGTATGTAGATTCCTTTTCAAGCAAAGA  350

seq1  ATGAAAGAAAGGGTGGTCTAAAAATAAGAGAAGAGAAGGTTAGAGAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGAAAGGGTGGTCTAAAAATAAGAGAAGAGAAGGTTAGAGAATGT  400

seq1  CAGAAGGGTAGAAGATTGTATTTCCACCTTTCTAAGCATTCCAGAAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGGTAGAAGATTGTATTTCCACCTTTCTAAGCATTCCAGAAGAGA  450

seq1  CTATATTATTTTGTTGAATGATATAGTCTCAGTGCCATTTCCTCTCAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTATTTTGTTGAATGATATAGTCTCAGTGCCATTTCCTCTCAGAT  500

seq1  CCTGCTCTGATATGTCAGCATTCTGATAATTTACACCTGTCCCTGACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCTGATATGTCAGCATTCTGATAATTTACACCTGTCCCTGACTCT  550

seq1  AAGCTCCTTTACTCTGCAAACTCAAAAGTCTTGTGTGTATGCATCTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCTTTACTCTGCAAACTCAAAAGTCTTGTGTGTATGCATCTGTTT  600

seq1  TCATTCTTTAAAAAAAAAAAGATTAATTTTATGTGTGAGCACCCTGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTTAAAAAAAAAAAGATTAATTTTATGTGTGAGCACCCTGTTTT  650

seq1  CAGACACACCAGAAGAGGCCATCAGATCCCATTACAGATGGCTGTGAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACACCAGAAGAGGCCATCAGATCCCATTACAGATGGCTGTGAGCC  700

seq1  ACCATGTGGTTGCTGGAAATTGGACTCAGACTCTTTGGAAGAGCCTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTGGTTGCTGGAAATTGGACTCAGACTCTTTGGAAGAGCCTTTGT  750

seq1  TCAGTGCTCTGAACTCCTGAGCCATCTCTCCAGCCC-TTTCATTTTTTTC  799
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCAGTGCTCTGAACTCCTGAGCCATCTCTCCAGCCCTTTTCATTTTTTTC  800

seq1  TTTTTTCTTTCGTTTTCAGTTTGAGGGATAGAACACAGAGGCTTGTATA-  848
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTTTTCTTTCGTTTTCAGTTTGAGGGATAGAACACAGAGGCTTGTATAT  850

seq1  TTTTAGGCATATACTGTACCTAT-GGCCTATACAGATAGTTCTGTTCTTC  897
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTTAGGCATATACTGTACCTATGGGCCTATACAGATAGTTCTGTTCTTC  900

seq1  TTGAACTGATTCTA-GACTTTCTTGCAGTTAAAAGCCGATCTGAGTGGTT  946
      |||||||||||||| |||||||||||||||||||||||||||||||| ||
seq2  TTGAACTGATTCTAGGACTTTCTTGCAGTTAAAAGCCGATCTGAGTGTTT  950

seq1  GGAGAACTATCTCAGTGGTTAAGAGCACTGCCTG-CTCTTCCAAAGGACC  995
      |||||||||||||||||||| ||||||||||||| |||||||||||||||
seq2  GGAGAACTATCTCAGTGGTTTAGAGCACTGCCTGCCTCTTCCAAAGGACC  1000

seq1  AGAGTT-CAATTCCCATCAGTCAC-ATGGCAGCTCATG-CCTGTAATTCG  1042
      |||||| || |||||||||||||| ||| ||||||||| |||| |  |||
seq2  AGAGTTCCATTTCCCATCAGTCACAATGCCAGCTCATGCCCTGCA--TCG  1048

seq1  GTT--CCAGGGGATCCTACACCCTTACATAGACATACATGCGGGCAAAAC  1090
      |||   ||||||  ||||||||||||||||||||||||||| ||  ||||
seq2  GTTTCTCAGGGGTCCCTACACCCTTACATAGACATACATGCTGGGCAAAC  1098

seq1  ATAAAAATTAAAA  1103
      |||||||||||||
seq2  ATAAAAATTAAAA  1111

seq1: chrX_71682879_71684053
seq2: B6Ng01-177F11.g_68_1249 (reverse)

seq1  ACAACTTTTATAAGGAAAACATTCTATCTGGCTTACATTCAGAGGTTT-A  49
      ||||| ||||||||  || | |||||||||    || |  |||||||| |
seq2  ACAACCTTTATAAG--AAGCGTTCTATCTGCTGCACTTCAAGAGGTTTAA  48

seq1  GTCCAT-TATTGTC-ATGGTAGC-AAGCATG-ATGGTAA-GCA-GACAG-  92
      || |||  |||||| |||||||| ||||||| ||||||| ||| ||||| 
seq2  GTTCATAAATTGTCAATGGTAGCAAAGCATGAATGGTAAGGCAGGACAGA  98

seq1  ACATGATGCTGGACAGGTGTC-TGAAAGTTCTTCATCGGGATTGGCAGGC  141
      |||||||||| |||| ||||| |||||||||||||||||  |||  ||||
seq2  ACATGATGCT-GACA-GTGTCTTGAAAGTTCTTCATCGGATTTGCAAGGC  146

seq1  AGCAGGAAGAGAGAGTAAACCAGTGA-GCCTAGCTTGAGCA-TCTGAAAC  189
      |||| ||||||||||||| ||||||| |||||||||||||| ||||||||
seq2  AGCA-GAAGAGAGAGTAACCCAGTGAGGCCTAGCTTGAGCATTCTGAAAC  195

seq1  CTCAAAGTCCATCCCCAGTGATCCG-CTTCTTTTAACAAGGCCA-CACCT  237
      |||||||||||| |||||||||||| |||||||||||||||||| |||||
seq2  CTCAAAGTCCAT-CCCAGTGATCCGCCTTCTTTTAACAAGGCCACCACCT  244

seq1  ACTCTTAACAA-GGCCACTTATCCTAATCCTTTTAAATAATTCCACTCTC  286
      |||| |||||| |||||||||||||||||| |||||||||||||||||||
seq2  ACTC-TAACAAGGGCCACTTATCCTAATCC-TTTAAATAATTCCACTCTC  292

seq1  TAGAATCCTACGGGGG-CCATTTTCACTCAAAACATCATACTGGGATCTA  335
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAGAATCCTACGGGGGCCCATTTTCACTCAAAACATCATACTGGGATCTA  342

seq1  GCTTATTCTTTAGGAAGCACTGCAGGGCCCCTGAGACCACACTCAAGAGC  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTCTTTAGGAAGCACTGCAGGGCCCCTGAGACCACACTCAAGAGC  392

seq1  TCACTATCCAGACTGATATGCAGTGGGATTCTACCAAGGCAGAAAGTCCT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATCCAGACTGATATGCAGTGGGATTCTACCAAGGCAGAAAGTCCT  442

seq1  AGGTGAACAAGACTGGATACATTCCACAGCAACCCTGTGAATAGCACAGA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAACAAGACTGGATACATTCCACAGCAACCCTGTGAATAGCACAGA  492

seq1  GCCCTCATGAACTACTTCTCATTAAAGACTATGGATTCCATGTTTCTGTT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCATGAACTACTTCTCATTAAAGACTATGGATTCCATGTTTCTGTT  542

seq1  GGGAGTTGTTCACGTTGGTATCCTCTGCCAGGCATGTACCAGTATTTCTG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTGTTCACGTTGGTATCCTCTGCCAGGCATGTACCAGTATTTCTG  592

seq1  AATTCTGGCAGAAAAGTGAGTTTGACTGACTTTGTCAACTAATGGTCTTG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGGCAGAAAAGTGAGTTTGACTGACTTTGTCAACTAATGGTCTTG  642

seq1  GGACTGTCACTCACTCTCTTTTGCCAAGGGGGTTAGGTTGCCACATGAGA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTCACTCACTCTCTTTTGCCAAGGGGGTTAGGTTGCCACATGAGA  692

seq1  TCATTTAGTTACAGGCATGGGTACTGTTGTGCCTCTCATACTGCCTTGCT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAGTTACAGGCATGGGTACTGTTGTGCCTCTCATACTGCCTTGCT  742

seq1  GCTGTCCTCCATATAGTTAGTGAAGCTAACAGGCCTTCTCAGTGCAATAG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTCCATATAGTTAGTGAAGCTAACAGGCCTTCTCAGTGCAATAG  792

seq1  GTAGTTATTGTGTTTGTGGAGTAGTGGGTTGGGGCTCCTGTCCTGTGGGA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTATTGTGTTTGTGGAGTAGTGGGTTGGGGCTCCTGTCCTGTGGGA  842

seq1  GGGAGGAGAGTTTGACTTGGGCTCAGAGAGCACTGGTGGTGGGTTGGTGG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGAGTTTGACTTGGGCTCAGAGAGCACTGGTGGTGGGTTGGTGG  892

seq1  GGGGAGGGCAGTGTGAGAAAAAGCCAAAGGGGAGCAGGCCCAGTAGTCCA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGGCAGTGTGAGAAAAAGCCAAAGGGGAGCAGGCCCAGTAGTCCA  942

seq1  GATCTGCCTTGTCAAAGTTGGGATGATCTGCTGTCAGTGGCTTCCTCAAA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCCTTGTCAAAGTTGGGATGATCTGCTGTCAGTGGCTTCCTCAAA  992

seq1  GACACATGGAAATGTCCATCATTGTCTTTGTAATGAGCACACAGGGAGGT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATGGAAATGTCCATCATTGTCTTTGTAATGAGCACACAGGGAGGT  1042

seq1  ACCAGGGTGTTGAGGCTAACACCGGAACTAGAGTTTAAGGGAAACTGTGG  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGTGTTGAGGCTAACACCGGAACTAGAGTTTAAGGGAAACTGTGG  1092

seq1  GGTACTGTAGGCCAGGATCAGAAGATATGGGTGATAGAGGTAAGACACCA  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGTAGGCCAGGATCAGAAGATATGGGTGATAGAGGTAAGACACCA  1142

seq1  TGAGCTTTTACAGTGAGGGTATAGAGGCAGAGATGAATTC  1175
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTTTACAGTGAGGGTATAGAGGCAGAGATGAATTC  1182