BAC Information

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BAC

Clone NameB6Ng01-178B11
ChromosomeX (Build37)
Map Location 83,773,200 - 83,896,512
singlet/doubletdoublet
Overlap genenone
Upstream geneMap3k7ip3, Gyk, LOC100042350, LOC629340, LOC100041562, 5430427O19Rik, 1700072E05Rik, Nr0b1, CN716893, LOC667841, LOC236427, EG667852, EG436212, Gm41, EG629374, EG637027
Downstream geneIl1rapl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178B11.bB6Ng01-178B11.g
ACCGA005177GA005178
length1,1341,128
definitionB6Ng01-178B11.b B6Ng01-178B11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,773,200 - 83,774,343)(83,895,376 - 83,896,512)
sequence
gaattccaagggatctgtctgtctgtgtccctagtctcccccctcccccc
ctggactgaagtcacagactaacaagactatttctggtttacgtgttgtc
aatctaacctgatattaccaggcttgggtaacaggtactttattgactga
gccattttcagagctccaacagtttgtgtctttatatgaatattagttat
agggatgtgttcatttcatgaaaattcactgtctatctgtgtgcttcact
gaattcatatataatttcagtaaatttaaaattggcagtgcaggagcttt
ttatccattggttcaattatttcttagtcatgttgaatatgagaaagcat
aaggaatttctggctgagaatgatgactgatgaacatgaaaagagttttg
gcttacatttaggtaccagaaaactcatcagcaagaatataaaagtgagt
ctagtcataaaagtgaaaataccactggctcaataagccaacaattatac
atgaattgccaattttattctgcccaaaataggtgccacctattgcttga
tggcacaaataagcatgttagggaggaataaactgttgtcagttgggcag
ggacctttgaaaacattccttcaaaaattggtctgccatctggatagaag
gtttacagcctcaacactgcatgattgtctattaaaaggacacatggatg
ggagacaatgaggaagaataaatatgagcattctgtacttacctagccaa
aacctgagcctctccagcaagaccagacgctggaatctttgtcaacccat
catgtaaaagacctgatggaaacaagctctggaacgcagcagaggaattg
tgtttgctgcccaaaagttgtgctattccatatgaaaaggaaagcagtcg
gccttagctaacctgtgagagggttttcttcttatggattttaaaataaa
atctagagaattcctctggattttcagattgaattgaacagaaaagttca
ctgcaaattatacatccatcttacaatatgaggagaaagaaagagacatg
ccatgactgacaaagtaccatattattttataaatatatcccctcatgga
atctcatgtgagcaattacctctgaatcagtaca
gaattcaaataatacaaataaaaggctctttccttaaaatttcctttgtc
taagaccagtctgaaaacagttttctagattagaaataaaaccatgaatt
tatgtacaactgatgattttttttttttgcaatttcaccacctgcaagta
caacactaatttgttttgcaaaggaacagatacagtagctaaagatccaa
gtccacatattccttttgtgaaaaaaaaaaagcacaacgttattttgatt
atttacatattttgtttatttctacttggaaatagaaatctatctgaagc
acttcatattcctgattttcccttcagggtttaagttgaatcagatttgt
agggagatggtattcttccatggaacaagaaaaggacttttccttgagta
atagatgcatgatggcacttcaaaacagttctcatctactgaatacttcc
tttattttatagtcatagctctcttttacctctaagcccttcatgtcttt
gttatttgtggatgcacagttcttttctaacttctaacatggagttatcc
tatgactctatatcagttccatttgcctagaaacacatccaatacagctt
ttatttatttatttgtagtgctacttcatttctagatcctcctaagaaag
aaattccaagctccctgggttattggacccagagcaaggagtaggcacac
acagtaggggaactatctaaatttttcttctattaccaccattagtctga
gcctcagctttgtagcagtgtgagatatgcagagccaagaaatccctgac
tgattgtatagtgagcagatgaagtctggggtgaagatatattgttgaca
tacacaaatccatgtcaaggaccaaggcacatatggatcaggcttggaaa
ggaaaagcctacttttgcccaagtgtgagtatttatgatcagtattgcaa
aaactagcaaccccagttcctcctcatatatgttacaatctgagacagct
agcctacagaaactctactgagactactcctccctatgtgatgtaataaa
catcatgctgagtttaaaatatggatggtaagatataagcttcatcagag
tatacacagcaccctatccagaattttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_83773200_83774343
seq2: B6Ng01-178B11.b_45_1178

seq1  GAATTCCAAGGGATCTGTCTGTCTGTGTCCCTAGTCTCCCCCCTCCCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGGATCTGTCTGTCTGTGTCCCTAGTCTCCCCCCTCCCCCC  50

seq1  CTGGACTGAAGTCACAGACTAACAAGACTATTTCTGGTTTACGTGTTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTGAAGTCACAGACTAACAAGACTATTTCTGGTTTACGTGTTGTC  100

seq1  AATCTAACCTGATATTACCAGGCTTGGGTAACAGGTACTTTATTGACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAACCTGATATTACCAGGCTTGGGTAACAGGTACTTTATTGACTGA  150

seq1  GCCATTTTCAGAGCTCCAACAGTTTGTGTCTTTATATGAATATTAGTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTTCAGAGCTCCAACAGTTTGTGTCTTTATATGAATATTAGTTAT  200

seq1  AGGGATGTGTTCATTTCATGAAAATTCACTGTCTATCTGTGTGCTTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGTGTTCATTTCATGAAAATTCACTGTCTATCTGTGTGCTTCACT  250

seq1  GAATTCATATATAATTTCAGTAAATTTAAAATTGGCAGTGCAGGAGCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATATAATTTCAGTAAATTTAAAATTGGCAGTGCAGGAGCTTT  300

seq1  TTATCCATTGGTTCAATTATTTCTTAGTCATGTTGAATATGAGAAAGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCATTGGTTCAATTATTTCTTAGTCATGTTGAATATGAGAAAGCAT  350

seq1  AAGGAATTTCTGGCTGAGAATGATGACTGATGAACATGAAAAGAGTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATTTCTGGCTGAGAATGATGACTGATGAACATGAAAAGAGTTTTG  400

seq1  GCTTACATTTAGGTACCAGAAAACTCATCAGCAAGAATATAAAAGTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACATTTAGGTACCAGAAAACTCATCAGCAAGAATATAAAAGTGAGT  450

seq1  CTAGTCATAAAAGTGAAAATACCACTGGCTCAATAAGCCAACAATTATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCATAAAAGTGAAAATACCACTGGCTCAATAAGCCAACAATTATAC  500

seq1  ATGAATTGCCAATTTTATTCTGCCCAAAATAGGTGCCACCTATTGCTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTGCCAATTTTATTCTGCCCAAAATAGGTGCCACCTATTGCTTGA  550

seq1  TGGCACAAATAAGCATGTTAGGGAGGAATAAACTGTTGTCAGTTGGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAAATAAGCATGTTAGGGAGGAATAAACTGTTGTCAGTTGGGCAG  600

seq1  GGACCTTTGAAAACATTCCTTCAAAAATTGGTCTGCCATCTGGATAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTTTGAAAACATTCCTTCAAAAATTGGTCTGCCATCTGGATAGAAG  650

seq1  GTTTACAGCCTCAACACTGCATGATTGTCTATTAAAAGGACACATGGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACAGCCTCAACACTGCATGATTGTCTATTAAAAGGACACATGGATG  700

seq1  GGAGACAATGAGGAAGAATAAATATGAGCATTCTGTACTTACCTAGCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAATGAGGAAGAATAAATATGAGCATTCTGTACTTACCTAGCCAA  750

seq1  AACCTGAGCCTCTCCAGCAAGACCAGACGCTGGAATCTTTGTCAACCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAGCCTCTCCAGCAAGACCAGACGCTGGAATCTTTGTCAACCCAT  800

seq1  CATGTAAAAGACCTGATGGAAACAAGCTCTGGAACGCAGCAGAGGAATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAAAGACCTGATGGAAACAAGCTCTGGAACGCAGCAGAGGAATTG  850

seq1  TGTTTGCTGCCCAAAAGTTGTGCTATTCCATATGAAAAGGAAAGCAGTCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCTGCCCAAAAGTTGTGCTATTCCATATGAAAAGGAAAGCAGTCG  900

seq1  GCCTTAGCTAACCTGTGAGAGGGTTTTCTTCTTATGGATTTTAAAATAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAGCTAACCTGTGAGAGGGTTTTCTTCTTATGGATTTTAAAATAAA  950

seq1  ATCTAGAGAATTCCTCTGGATTTTCAGATTGAATTTGAACAGAAAAGTTC  1000
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATCTAGAGAATTCCTCTGGATTTTCAGATTGAA-TTGAACAGAAAAGTTC  999

seq1  ACTGCAAATTTATACATCCATCTACAAATATGAGGAAGAAAGAAAAGAGA  1050
      |||||||| ||||||||||||||   ||||||||| |||||| |||||||
seq2  ACTGCAAA-TTATACATCCATCTTACAATATGAGG-AGAAAG-AAAGAGA  1046

seq1  CAATGCCATGGACTGACCAAAGTACCCAATAATTATTTATAAATATATCC  1100
      | ||||||| |||||| |||||||||  ||| |  |||||||||||||||
seq2  C-ATGCCAT-GACTGA-CAAAGTACC--ATATTATTTTATAAATATATCC  1091

seq1  CCTCATGGAATCTCATGTTGAAGCAAT--ACTCTGAATCAGGTACA  1144
      ||||||||||||||||||   ||||||   |||||||||| |||||
seq2  CCTCATGGAATCTCATGT--GAGCAATTACCTCTGAATCA-GTACA  1134

seq1: chrX_83895376_83896512
seq2: B6Ng01-178B11.g_67_1194 (reverse)

seq1  GAAAATCTGGGATAGGGTTGGCTGTGTATACTCTGATGGAGCTATAAATC  50
      ||||||   |||||||||  |||||||||||||||||| |||| || |||
seq2  GAAAATTCTGGATAGGGT--GCTGTGTATACTCTGATGAAGCT-TATATC  47

seq1  CTAACAT-CATATCTAAAACCTCAGCATGATTGTTATATACATCACATAG  99
       || ||| ||||| | ||| |||||||||||  |||| ||||||||||||
seq2  TTACCATCCATATTTTAAA-CTCAGCATGATGTTTAT-TACATCACATAG  95

seq1  GGAGGAGTTAGTCTCAGTAGGAAGTTTCTGTAGGCTAGCTGTCTCAGATT  149
      ||||||| ||||||||||||  ||||||||||||||||||||||||||||
seq2  GGAGGAG-TAGTCTCAGTAG--AGTTTCTGTAGGCTAGCTGTCTCAGATT  142

seq1  GTAAACATATATGAGGAGGAAACTGGGGTTGCTAGTTTTTGCAATACTGA  199
      || |||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GT-AACATATATGAGGAGG-AACTGGGGTTGCTAGTTTTTGCAATACTGA  190

seq1  TCATAAATACTCACACTTGGGCAAAAGTAGGCTTTTCCTTTCCAAGCCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAATACTCACACTTGGGCAAAAGTAGGCTTTTCCTTTCCAAGCCTG  240

seq1  ATCCATATGTGCCTTGGTCCTTGACATGGATTTGTGTATGTCAACAATAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATATGTGCCTTGGTCCTTGACATGGATTTGTGTATGTCAACAATAT  290

seq1  ATCTTCACCCCAGACTTCATCTGCTCACTATACAATCAGTCAGGGATTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCACCCCAGACTTCATCTGCTCACTATACAATCAGTCAGGGATTTC  340

seq1  TTGGCTCTGCATATCTCACACTGCTACAAAGCTGAGGCTCAGACTAATGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCTGCATATCTCACACTGCTACAAAGCTGAGGCTCAGACTAATGG  390

seq1  TGGTAATAGAAGAAAAATTTAGATAGTTCCCCTACTGTGTGTGCCTACTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATAGAAGAAAAATTTAGATAGTTCCCCTACTGTGTGTGCCTACTC  440

seq1  CTTGCTCTGGGTCCAATAACCCAGGGAGCTTGGAATTTCTTTCTTAGGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCTGGGTCCAATAACCCAGGGAGCTTGGAATTTCTTTCTTAGGAG  490

seq1  GATCTAGAAATGAAGTAGCACTACAAATAAATAAATAAAAGCTGTATTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGAAATGAAGTAGCACTACAAATAAATAAATAAAAGCTGTATTGG  540

seq1  ATGTGTTTCTAGGCAAATGGAACTGATATAGAGTCATAGGATAACTCCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTCTAGGCAAATGGAACTGATATAGAGTCATAGGATAACTCCAT  590

seq1  GTTAGAAGTTAGAAAAGAACTGTGCATCCACAAATAACAAAGACATGAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAGTTAGAAAAGAACTGTGCATCCACAAATAACAAAGACATGAAG  640

seq1  GGCTTAGAGGTAAAAGAGAGCTATGACTATAAAATAAAGGAAGTATTCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGAGGTAAAAGAGAGCTATGACTATAAAATAAAGGAAGTATTCAG  690

seq1  TAGATGAGAACTGTTTTGAAGTGCCATCATGCATCTATTACTCAAGGAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGAGAACTGTTTTGAAGTGCCATCATGCATCTATTACTCAAGGAAA  740

seq1  AGTCCTTTTCTTGTTCCATGGAAGAATACCATCTCCCTACAAATCTGATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTTTCTTGTTCCATGGAAGAATACCATCTCCCTACAAATCTGATT  790

seq1  CAACTTAAACCCTGAAGGGAAAATCAGGAATATGAAGTGCTTCAGATAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTAAACCCTGAAGGGAAAATCAGGAATATGAAGTGCTTCAGATAGA  840

seq1  TTTCTATTTCCAAGTAGAAATAAACAAAATATGTAAATAATCAAAATAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTTCCAAGTAGAAATAAACAAAATATGTAAATAATCAAAATAAC  890

seq1  GTTGTGCTTTTTTTTTTTCACAAAAGGAATATGTGGACTTGGATCTTTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGCTTTTTTTTTTTCACAAAAGGAATATGTGGACTTGGATCTTTAG  940

seq1  CTACTGTATCTGTTCCTTTGCAAAACAAATTAGTGTTGTACTTGCAGGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTATCTGTTCCTTTGCAAAACAAATTAGTGTTGTACTTGCAGGTG  990

seq1  GTGAAATTGCAAAAAAAAAAAATCATCAGTTGTACATAAATTCATGGTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATTGCAAAAAAAAAAAATCATCAGTTGTACATAAATTCATGGTTT  1040

seq1  TATTTCTAATCTAGAAAACTGTTTTCAGACTGGTCTTAGACAAAGGAAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTAATCTAGAAAACTGTTTTCAGACTGGTCTTAGACAAAGGAAAT  1090

seq1  TTTAAGGAAAGAGCCTTTTATTTGTATTATTTGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGAAAGAGCCTTTTATTTGTATTATTTGAATTC  1128