MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-181E18
Chromosome	10 (Build37)	X (Build37)
Map Location	92,721,397 - 92,721,756	164,815,431 - 164,816,525
singlet/doublet	singlet	singlet
Overlap gene	Pctk2, Elk3
Upstream gene	LOC216229, LOC100041814, Nedd1, Gm872, 4930485B16Rik, EG667314
Downstream gene	LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC216229 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:216229
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC100041814 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041814
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	Nedd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17997 MGI:97293
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm872 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:380653 MGI:2685718
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	4930485B16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:380654 MGI:1922208
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 9 ESTs, 1 Protein

name	EG667314 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:667314 MGI:3644109
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	Pctk2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237459 MGI:97517
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Elk3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13713 MGI:101762
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100041854 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041854
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 1 Protein

name	Lta4h (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16993 MGI:96836
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hal (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15109 MGI:96010
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Amdhd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71761 MGI:1919011
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 20 ESTs, 6 Proteins

name	Ccdc38 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237465 MGI:2444738
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Snrpf (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69878 MGI:1917128
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 82 ESTs, 4 Proteins

name	LOC100041873 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041873
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	Ntn4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57764 MGI:1888978
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667338 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667338
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 218 ESTs, 5 Proteins pseudo : _no_value

name	LOC100041907 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041907
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 449 ESTs, 6 Proteins pseudo : _no_value

name	Usp44 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:327799 MGI:3045318
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Metap2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56307 MGI:1929701
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Vezt (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:215008 MGI:2143698
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fgd6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13998 MGI:1261419
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nr2c1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22025 MGI:1352465
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ndufa12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66414 MGI:1913664
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nedd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679031 GeneID:17997 MGI:97293
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neural precursor cell expressed, developmentally down-regulated gene 1 transcript_id : NM_008682.1

name	Gm872 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388536 GeneID:380653 MGI:2685718
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : gene model 872, (NCBI) transcript_id : XM_354560.4

name	4930485B16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388537 GeneID:380654 MGI:1922208
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 9 ESTs, 1 Protein product : RIKEN cDNA 4930485B16 gene transcript_id : XM_989129.1

name	EG667314 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388567 GeneID:667314 MGI:3644109
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : predicted gene, EG667314 transcript_id : XM_001003594.1

name	Pctk2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22122812 GeneID:237459 MGI:97517
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PCTAIRE-motif protein kinase 2 transcript_id : NM_146239.1

name	Elk3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7305022 GeneID:13713 MGI:101762
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ELK3, member of ETS oncogene family transcript_id : NM_013508.1

name	Elk3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:45383917 GeneID:13713 MGI:101762
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ELK3, member of ETS oncogene family transcript_id : NM_205536.1

name	LOC100041854 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261015 GeneID:100041854
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 1 Protein product : similar to Ubtf protein transcript_id : XM_001477121.1

name	Lta4h (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116734869 GeneID:16993 MGI:96836
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leukotriene A4 hydrolase transcript_id : NM_008517.2

name	Hal (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981709 GeneID:15109 MGI:96010
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : histidine ammonia lyase transcript_id : NM_010401.3

name	Amdhd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388541 GeneID:71761 MGI:1919011
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 20 ESTs, 6 Proteins product : amidohydrolase domain containing 1 transcript_id : XM_125854.4

name	Ccdc38 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802738 GeneID:237465 MGI:2444738
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 38 transcript_id : NM_175488.4

name	Snrpf (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388566 GeneID:69878 MGI:1917128
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 82 ESTs, 4 Proteins product : small nuclear ribonucleoprotein polypeptide F transcript_id : XM_892627.2

name	LOC100041873 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261017 GeneID:100041873
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : hypothetical protein LOC100041873 transcript_id : XM_001477148.1

name	Ntn4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328256 GeneID:57764 MGI:1888978
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : netrin 4 transcript_id : NM_021320.2

name	Usp44 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142344982 GeneID:327799 MGI:3045318
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin specific peptidase 44 transcript_id : NM_183199.2

name	Metap2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:83779008 GeneID:56307 MGI:1929701
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : methionine aminopeptidase 2 transcript_id : NM_019648.3

name	Vezt (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142365165 GeneID:215008 MGI:2143698
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vezatin, adherens junctions transmembrane protein transcript_id : NM_172538.3

name	Fgd6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:37693996 GeneID:13998 MGI:1261419
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : FYVE, RhoGEF and PH domain containing 6 transcript_id : NM_053072.2

name	Nr2c1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982759 GeneID:22025 MGI:1352465
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear receptor subfamily 2, group C, member 1 transcript_id : NM_011629.2

name	Ndufa12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142354746 GeneID:66414 MGI:1913664
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 transcript_id : NM_025551.2

name	Nedd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679032 CCDS:CCDS24123.1 GeneID:17997 MGI:97293
definition	codon_start : 1 exception : mismatches in translation product : neural precursor cell expressed, developmentally down-regulated gene 1 protein_id : NP_032708.1

name	Gm872 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83027669 GeneID:380653 MGI:2685718
definition	codon_start : 1 product : hypothetical protein protein_id : XP_354560.3

name	4930485B16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94388538 GeneID:380654 MGI:1922208
definition	codon_start : 1 product : hypothetical protein LOC380654 protein_id : XP_994223.1

name	EG667314 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94388568 GeneID:667314 MGI:3644109
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001003594.1

name	Pctk2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122813 GeneID:237459 MGI:97517
definition	GO_function : GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : PCTAIRE-motif protein kinase 2 protein_id : NP_666351.1

name	Elk3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:45383918 GeneID:13713 MGI:101762
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0001525 - angiogenesis [Evidence IMP]; GO:0050875 - cellular physiological process [Evidence IEA]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006350 - transcription [Evidence IEA]; GO:0042060 - wound healing [Evidence IMP] codon_start : 1 exception : mismatches in translation note : isoform b is encoded by transcript variant 2 product : ELK3, member of ETS oncogene family isoform b protein_id : NP_991099.1

name	Elk3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305023 CCDS:CCDS24124.1 GeneID:13713 MGI:101762
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0001525 - angiogenesis [Evidence IMP]; GO:0050875 - cellular physiological process [Evidence IEA]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006350 - transcription [Evidence IEA]; GO:0042060 - wound healing [Evidence IMP] codon_start : 1 exception : mismatches in translation note : isoform a is encoded by transcript variant 1 product : ELK3, member of ETS oncogene family isoform a protein_id : NP_038536.1

name	LOC100041854 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261016 GeneID:100041854
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477171.1

name	Lta4h (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116734870 CCDS:CCDS24125.1 GeneID:16993 MGI:96836
definition	EC_number : 3.3.2.6 GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0004301 - epoxide hydrolase activity [Evidence ISS]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004463 - leukotriene-A4 hydrolase activity [Evidence IEA]; GO:0004179 - membrane alanyl aminopeptidase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence ISS] [Evidence IEA] GO_process : GO:0006954 - inflammatory response [Evidence ISS]; GO:0019370 - leukotriene biosynthesis [Evidence IEA] [Evidence ISS]; GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 note : LTA4 hydrodase product : leukotriene A4 hydrolase protein_id : NP_032543.2

name	Hal (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754152 GeneID:15109 MGI:96010
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0016211 - ammonia ligase activity [Evidence IEA]; GO:0004397 - histidine ammonia-lyase activity [Evidence IEA]; GO:0016829 - lyase activity [Evidence IEA] GO_process : GO:0009058 - biosynthesis [Evidence IEA]; GO:0006548 - histidine catabolism [Evidence IEA]; GO:0006547 - histidine metabolism [Evidence IEA] codon_start : 1 note : histidinemia product : histidine ammonia lyase protein_id : NP_034531.1

name	Amdhd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20865128 GeneID:71761 MGI:1919011
definition	codon_start : 1 product : amidohydrolase domain containing 1 protein_id : XP_125854.1

name	Ccdc38 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31541988 CCDS:CCDS24127.1 GeneID:237465 MGI:2444738
definition	codon_start : 1 product : coiled-coil domain containing 38 protein_id : NP_780697.2

name	Snrpf (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83027678 GeneID:69878 MGI:1917128
definition	codon_start : 1 product : small nuclear ribonucleoprotein polypeptide F protein_id : XP_897720.1

name	LOC100041873 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261018 GeneID:100041873
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477198.1

name	Ntn4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946626 CCDS:CCDS24128.1 GeneID:57764 MGI:1888978
definition	GO_component : GO:0005604 - basement membrane [Evidence ISS] [Evidence IDA] GO_process : GO:0016322 - neuron remodeling [Evidence IDA] codon_start : 1 exception : mismatches in translation note : beta-netrin product : netrin 4 protein_id : NP_067295.1

name	Usp44 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34147264 CCDS:CCDS24129.1 GeneID:327799 MGI:3045318
definition	GO_function : GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004221 - ubiquitin thiolesterase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : ubiquitin specific peptidase 44 protein_id : NP_899022.1

name	Metap2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9789873 GeneID:56307 MGI:1929701
definition	EC_number : 3.4.11.18 GO_function : GO:0004177 - aminopeptidase activity [Evidence IEA]; GO:0050897 - cobalt ion binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008235 - metalloexopeptidase activity [Evidence IEA]; GO:0004239 - methionyl aminopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 note : eIF-2-associated p67; initiation factor 2-associated protein (p67); peptidase M 2 product : methionine aminopeptidase 2 protein_id : NP_062622.1

name	Vezt (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542087 GeneID:215008 MGI:2143698
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IDA] GO_process : GO:0016337 - cell-cell adhesion [Evidence IMP]; GO:0043009 - embryonic development (sensu Vertebrata) [Evidence IMP] codon_start : 1 product : transmembrane protein vezatin protein_id : NP_766126.2

name	Fgd6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:37693997 GeneID:13998 MGI:1261419
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005089 - Rho guanyl-nucleotide exchange factor activity [Evidence IEA] GO_process : GO:0035023 - regulation of Rho protein signal transduction [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : ethanol decreased 4 product : FYVE, RhoGEF and PH domain containing 6 protein_id : NP_444302.3

name	Nr2c1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982760 CCDS:CCDS24131.1 GeneID:22025 MGI:1352465
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0042826 - histone deacetylase binding [Evidence IPI]; GO:0004879 - ligand-dependent nuclear receptor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence ISS] [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0016564 - transcriptional repressor activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : early embryonic nuclear receptor; 80-3 cNDA; orphan receptor, TR2-11; nuclear receptor subfamily 2, group H, member 1 product : nuclear receptor subfamily 2, group C, member 1 protein_id : NP_035759.2

name	Ndufa12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27228985 CCDS:CCDS24132.1 GeneID:66414 MGI:1913664
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0009055 - electron carrier activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA] codon_start : 1 product : 13kDa differentiation-associated protein protein_id : NP_079827.2

name	LOC216229 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:216229
definition	number : 1 pseudo : _no_value

name	LOC100041814 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041814
definition	number : 1 pseudo : _no_value

name	LOC667338 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261118 GeneID:667338
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 218 ESTs, 5 Proteins product : similar to ribosomal protein L29 pseudo : _no_value transcript_id : XR_035700.1

name	LOC100041907 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261019 GeneID:100041907
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 449 ESTs, 6 Proteins product : similar to farnesyl pyrophosphate synthase pseudo : _no_value transcript_id : XR_033108.1

clone name	MSMg01-122K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315A08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-060F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-414P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-138J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-492E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-051J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-472D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-430K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371L17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327M13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131O11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-523J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-207E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-199D18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535H08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-050K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-197B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-107C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-107E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-071M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-210I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-162G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-519M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261E15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186G15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-230O01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281G19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-250C20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-083M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-310P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197K13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-258C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287O14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210L01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-271A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337E10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-264E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-299K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257B09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-067P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243I09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112F15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181E18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268L16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316O15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-035D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-213J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330J02
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-181E18.b	B6Ng01-181E18.g
ACC	GA007496	GA007497
length	628	1,103
definition	B6Ng01-181E18.b	B6Ng01-181E18.g
singlet/doublet	singlet	singlet
BLAST hit	unique	unique
Map location.	(92,721,397 - 92,721,756)	(164,815,431 - 164,816,525)
sequence	gaattcagttaaaatcaatgcataacgcaaccaaagcacacaatgaaagt gatactaagaaaaatattcatagtactaagtatcttcataaagaaattag agagatcttactggttacctgtagcgcgtgcgcgcacacatacacacaca cacacacacacacacacacacacatacaaagcaaactcaccctaaaggag tatacaagtagacagcagggaataatcaaactgagggtttaattcaataa aaatggaaacaaagagaacaattcaaagaatcaatgaaatgaggagttag ttctttgagaaaatcaacaagatagacaaacctttattcaaattaactga actgatcatgaatcttggggcctggcagagatcaggggcttataggagtc tgacttaagtcctcgaataaatggtatagtggagtagcttggtatttttg taggattattaacagtggtatcaagggctatctgacactttgcctgcttc cacaagatcctatttctcttcttgagttgcctcatcctgtcttaacttaa gggtacatgctctattgtagcttgttattctgtttggttgacttccctgg caggccttctcttttcgggggggggggg	gaattcttactctgaacacttcactcgtgctacactattaaagacattca aatcaaagggaatgttgagcagttcaatagtacaatagtctactgacaat tccatggttacttggacatgtgactcatctcctagaaaaactttcccaaa aagggattagcatttatgggcattattttgatatgactcttgtataacta gtagtgtttaactcaagttatatggtattatgttattgagataggatctt gtttcatagtcctggctgtcctggaaatcacaataaccttccgccgtcag actcatgagtgtcggacttacatacaactgaactttaggtctagtccttg ttatgttagcccaagctaagcttgaacttgaacatgaggcagtcctgccc agtatccagtgttggaatactagtaagtgcctttttttttctattgttga gccctgaaccctaggccctaaatactcaatttctaaatggtatcttaagt tagaagtttgtaaatttcagaattgctatcataagacagacagaagaaca aatgtgaggaagtattaagcaaagaaaataagataatgtatgagtaaaga actctccattaaaaatgtactgaaaatattgatttaaaaccttttaacta aaggggatttgtacatgcttatctcatcttcattcatgcccactttacct gttttgttataactcataagaacaaaacaggaggagtcagaggtataaat agggctcagcaggtaaagatacttgtccccaagcttaaggacctaagttt gatctgatcactgggacccacatggtagaagagaatggaatatctctgtc ttctgattccacatgtacaccatggtgcacatgcatgcacacgcacatac acacacacacacgtacacacacaacatacaccatggaatacagattatac aaaataatttttctaacaagaaaatatagttaatattgcctttataataa gaatttcacacttaaatgtcagagaagtagaatagccaagaaggtttcct tggcacagtactgtagactggtaccaacctctggaataaatatgtgacct taa
quality values	Open. Hide. 62 47 31 32 62 41 31 54 62 49 56 62 62 62 59 59 43 62 62 62 59 62 62 62 62 62 62 62 62 62 62 59 59 62 49 51 46 48 56 50 34 38 38 56 62 54 54 54 62 62 62 59 62 62 62 62 62 62 62 59 62 62 54 62 62 62 59 62 59 59 62 59 62 59 62 62 59 62 62 62 59 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 59 54 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 47 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 58 52 54 54 58 54 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 54 58 58 58 58 58 58 58 58 58 58 58 58 54 58 58 58 58 58 58 58 58 58 58 50 58 58 58 58 58 58 58 58 58 54 58 58 58 58 58 58 58 58 58 58 53 51 54 49 58 58 58 58 51 58 58 58 58 50 58 58 58 41 58 58 58 58 49 58 58 58 49 50 37 41 22 39 51 51 41 58 50 51 58 58 58 52 51 58 58 58 49 49 58 58 58 58 43 41	Open. 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Alignment Information

BAC End 1

BAC End 2

seq1: chr10_92721397_92721756
seq2: B6Ng01-181E18.b_179_671

seq1  ACACACACACACACACACACACACACACACACACACACATACATA-CTTA  49
      ||||| ||||||||||||||||||||||||||||||||||||| | |  |
seq2  ACACATACACACACACACACACACACACACACACACACATACAAAGCAAA  50

seq1  CTTACTGAGACCGAAAATATTTGCAGA-AGCAAG-----AACAAAATAAG  93
      || ||    |  ||  |||   | ||| |||| |     | |||| | ||
seq2  CTCACCCTAAAGGAGTATACAAGTAGACAGCAGGGAATAATCAAACTGAG  100

seq1  ACATGATTTC--------TGG-CACACATGGCCCTA-CCTACTACTC-AG  132
         | | |||        |||  ||| |  |  | |  | |  | || | 
seq2  GGTTTAATTCAATAAAAATGGAAACAAAGAGAACAATTCAAAGAATCAAT  150

seq1  CATCCCAGG--------------------CACCAAGACAGAAACAC----  158
       |    |||                    || ||||| ||| | ||    
seq2  GAAATGAGGAGTTAGTTCTTTGAGAAAATCAACAAGATAGACAAACCTTT  200

seq1  ---TACCTTCCTTGGACTCATTTTCAATCT---------------ATC--  188
          |  ||   || ||| ||  | |||||               |||  
seq2  ATTCAAATTAACTGAACTGATCATGAATCTTGGGGCCTGGCAGAGATCAG  250

seq1  -------------TCT---CTACTTCCT-----------TCT----GGGC  207
                   |||    ||  ||||           | |    | | 
seq2  GGGCTTATAGGAGTCTGACTTAAGTCCTCGAATAAATGGTATAGTGGAGT  300

seq1  AGC-----ATTT-----AGAT-----CCAG-----TCA---GCT---TAC  231
      |||     ||||      |||      |||     |||   |||   |  
seq2  AGCTTGGTATTTTTGTAGGATTATTAACAGTGGTATCAAGGGCTATCTGA  350

seq1  CACCATGAC--ATTCCACAAGTCACCTGGACCAGTCT--ACCTGCCTCA-  276
      |||  || |   |||||||||   |     |   |||  |  ||||||| 
seq2  CACTTTGCCTGCTTCCACAAGATCCTATTTCTCTTCTTGAGTTGCCTCAT  400

seq1  CATCCCCTA--TCCAGGATACA------ATTCCATGTAGTCACTCTACAA  318
      | |  | ||  |  ||| ||||      |||  |  | || | |||    
seq2  CCTGTCTTAACTTAAGGGTACATGCTCTATTGTAGCTTGTTATTCTGTTT  450

seq1  CACTTCATTCAAAAAAATCCGTTC-ATTTTCGGGGGGGGGGGG  360
         |   |||      |  | |||  |||||||||||||||||
seq2  GGTTGACTTCCCTGGCAGGCCTTCTCTTTTCGGGGGGGGGGGG  493

seq1: chrX_164815431_164816525
seq2: B6Ng01-181E18.g_64_1166

seq1  GAATTCTTACTCTGAACACTTCACTCGTGCTACACTATTAAAGACATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTCTGAACACTTCACTCGTGCTACACTATTAAAGACATTCA  50

seq1  AATCAAAGGGAATGTTGAGCAGTTCAATAGTACAATAGTCTACTGACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAGGGAATGTTGAGCAGTTCAATAGTACAATAGTCTACTGACAAT  100

seq1  TCCATGGTTACTTGGACATGTGACTCATCTCCTAGAAAAACTTTCCCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGTTACTTGGACATGTGACTCATCTCCTAGAAAAACTTTCCCAAA  150

seq1  AAGGGATTAGCATTTATGGGCATTATTTTGATATGACTCTTGTATAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATTAGCATTTATGGGCATTATTTTGATATGACTCTTGTATAACTA  200

seq1  GTAGTGTTTAACTCAAGTTATATGGTATTATGTTATTGAGATAGGATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGTTTAACTCAAGTTATATGGTATTATGTTATTGAGATAGGATCTT  250

seq1  GTTTCATAGTCCTGGCTGTCCTGGAAATCACAATAACCTTCCGCCGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATAGTCCTGGCTGTCCTGGAAATCACAATAACCTTCCGCCGTCAG  300

seq1  ACTCATGAGTGTCGGACTTACATACAACTGAACTTTAGGTCTAGTCCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGAGTGTCGGACTTACATACAACTGAACTTTAGGTCTAGTCCTTG  350

seq1  TTATGTTAGCCCAAGCTAAGCTTGAACTTGAACATGAGGCAGTCCTGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTAGCCCAAGCTAAGCTTGAACTTGAACATGAGGCAGTCCTGCCC  400

seq1  AGTATCCAGTGTTGGAATACTAGTAAGTGCCTTTTTTTTTCTATTGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCCAGTGTTGGAATACTAGTAAGTGCCTTTTTTTTTCTATTGTTGA  450

seq1  GCCCTGAACCCTAGGCCCTAAATACTCAATTTCTAAATGGTATCTTAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAACCCTAGGCCCTAAATACTCAATTTCTAAATGGTATCTTAAGT  500

seq1  TAGAAGTTTGTAAATTTCAGAATTGCTATCATAAGACAGACAGAAGAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTTTGTAAATTTCAGAATTGCTATCATAAGACAGACAGAAGAACA  550

seq1  AATGTGAGGAAGTATTAAGCAAAGAAAATAAGATAATGTATGAGTAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAGGAAGTATTAAGCAAAGAAAATAAGATAATGTATGAGTAAAGA  600

seq1  ACTCTCCATTAAAAATGTACTGAAAATATTGATTTAAAACCTTTTAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCATTAAAAATGTACTGAAAATATTGATTTAAAACCTTTTAACTA  650

seq1  AAGGGGATTTGTACATGCTTATCTCATCTTCATTCATGCCCACTTTACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGATTTGTACATGCTTATCTCATCTTCATTCATGCCCACTTTACCT  700

seq1  GTTTTGTTATAACTCATAAGAACAAAACAGGAGGAGTCAGAGGTATAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTATAACTCATAAGAACAAAACAGGAGGAGTCAGAGGTATAAAT  750

seq1  AGGGCTCAGCAGGTAAAGATACTTGTCCCCAAGCTTAAGGACCTAAGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCAGCAGGTAAAGATACTTGTCCCCAAGCTTAAGGACCTAAGTTT  800

seq1  GATCTGATCACTGGGACCCACATGGTAGAAGAGAATGGAATATCTCTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGATCACTGGGACCCACATGGTAGAAGAGAATGGAATATCTCTGTC  850

seq1  TTCTGATTTCCACATGTACACCATGGTGCACATGCATGCACACGCACATA  900
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGA-TTCCACATGTACACCATGGTGCACATGCATGCACACGCACATA  899

seq1  CACACACACACACGTACACACAC-ACATACACCATGG-ATACAGA-TATA  947
      ||||||||||||||||||||||| ||||||||||||| ||||||| ||||
seq2  CACACACACACACGTACACACACAACATACACCATGGAATACAGATTATA  949

seq1  CAAAATAA-TTTTCTAAC-AGAAAATATAGTTAATATTG-CTTTATAATA  994
      |||||||| ||||||||| |||||||||||||||||||| ||||||||||
seq2  CAAAATAATTTTTCTAACAAGAAAATATAGTTAATATTGCCTTTATAATA  999

seq1  AG-ATTTCACAC-TAAATGTCAGAGAAGTAGAATAGCACAG-AGGTTTCC  1041
      || ||||||||| ||||||||||||||||||||||||  || ||||||||
seq2  AGAATTTCACACTTAAATGTCAGAGAAGTAGAATAGCCAAGAAGGTTTCC  1049

seq1  TTGGCACAGCACTGTAGACTGTGTA-CACACTCTGGGATTAATAATGTGA  1090
      ||||||||| ||||||||||| ||| ||  |||||| || ||| ||||||
seq2  TTGGCACAGTACTGTAGACTG-GTACCAACCTCTGGAATAAAT-ATGTGA  1097

seq1  -CTTAA  1095
       |||||
seq2  CCTTAA  1103

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information