BAC Information

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BAC

Clone NameB6Ng01-182F03
ChromosomeX (Build37)
Map Location 138,383,231 - 138,453,681
singlet/doubletdoublet
Overlap geneLOC622901
Upstream geneVsig1, Psmd10, Atg4a, LOC100038961, Col4a6, Col4a5, Irs4, LOC633596, EG666488
Downstream geneEG436234, EG622956, Gucy2f, LOC623006, LOC100039023, Nxt2, EG434858, Kcne1l, Acsl4, Ppia-psx_1100.1, EG633736, EG245651, LOC100039086, EG436235, Tmem164, Ammecr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182F03.bB6Ng01-182F03.g
ACCGA008243GA008244
length1,038968
definitionB6Ng01-182F03.b B6Ng01-182F03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,452,652 - 138,453,681)(138,383,231 - 138,384,180)
sequence
gaattcactttggcttgctttaatgataacctataaatatcttgaaccag
ttcttattcccttacccaatctagtaatattacaccaattatgtttaata
ggtcagaaaactatacaacactaaagttaatacacatgttttggtcatac
aactgctaagtggtcgaatctcaatttgaactctgcaattggattctagc
taatatttgtcccttttggaaaaaaaaaaaagaacagattgaataatata
cacttgcttccttgttatatggacattatctgcagttgtttctagccccg
acaatcccctctgaagtgtaagtaatccatattttctctttcccagagcg
aatggtatttttgttggacagtaaaagctaggacagccaattctttgtga
tacctcttgtggtacaagcatgacacctacttgttacaatggactccctc
tggcctctgcacactcccttgcctttccctgctcctgacttcatttctga
tctctgactctctctcatttcaaaagtgatgtctataaggagaccctgtg
gtgttggaccaggaacatcttcaagattcaaggaagaccaagaatagcag
tggtcagttcattgataaagttatgggagtagggggagcaacatattgaa
tttgttagaaagaaattgtgagtcaggttagttggaatgagcctaaaata
tctagagagttttctgtagataagtttgtataggaatatttggtgtcttg
agttatttacatcacgagatacctggagtatagataaactctattcgaaa
tgctcatgtcatttcaagcaagtgtttctgacaataatgtaaaatgccag
caaaaggtacaggcctgttgattatgaatacagtgaagccaccagccatt
attctctctctcaccatggtagaattgtatctaatcataggatgctccct
gtgtccatttggtttctacccatactattaaagccaataacttcttaggc
taataagtaattaaaatatgttaatgtttgcctgacct
gaattccctcgcaagtattttcactaacatttttttctttattcgttatt
ttttctccaaatgggacagtcattattatatcttaatctgttatgttact
ggtattatcccccaaattttatcttgtttttgttggaaaagggtgccttt
gattgaaaactcagttttttctctcataacgacttctaatctctttcccc
tccgtctcttccttctcaatctcctctctcccaatctctcctcccacctg
gattcatcccctttctgtctctcattaaaaaataacccacgtgtaaggat
tataataaaatatgggataattcaaaaaaatataataagatgaaactaat
atatgataattagacaaaacgggcaaaaggaaaaaagcttaagagagggc
accaaaaacgaacacccattcttttgcacgctcccgaatcccataaaaca
actaagttgaaacatatatacataaaagtcccatagggcaaaaagggatg
tgtgtgtgtgtgagcgtgcataaaactaaaattataaaaattaaaaaaaa
attaagtaaaatccctgacacaatcttctgttgcccatctagtgctgggc
atgcagcctgctcttgagagtagtttgtttcccaagtgagactccctttg
agggaaatgatattttcatttgcaatgtgcttataaattagagtctagat
aatatatcttaaaagtactgaaatttctgactaatgaatgaaatggtttt
tatgcccccttccccagagatactggagtaatattttggaactctaccac
attggtatgatttgacgcctgcctgtgaaattatacattgtctattgagt
acgggttggagatgagttgatatcaatagtcgagattgagatagatagat
aacagatatggatattttgtcatgtatgatgtccttgaaaaaaccattca
gcatgtgttatcagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_138452652_138453681
seq2: B6Ng01-182F03.b_42_1079 (reverse)

seq1  AGGTCA-GCAAACATT-ACATATTTAATTTACTTA-TAGCCTA--GAGAT  45
      |||||| ||||||||| |||||||| | ||||||| |||||||   || |
seq2  AGGTCAGGCAAACATTAACATATTTTAATTACTTATTAGCCTAAGAAGTT  50

seq1  ATTGGCTTTAATAGTTATGGGTAGAAAAC-AATTGACACA-GGAGCAT-C  92
      |||||||||||||| |||||||||||| | ||| |||||| ||||||| |
seq2  ATTGGCTTTAATAG-TATGGGTAGAAACCAAATGGACACAGGGAGCATCC  99

seq1  TATGATTAGATACAATTCTACCATGTGTAGAGAGAGAATAATGGCTGGTG  142
      |||||||||||||||||||||||||   ||||||||||||||||||||||
seq2  TATGATTAGATACAATTCTACCATGGTGAGAGAGAGAATAATGGCTGGTG  149

seq1  GCTTCACTGTATTCATAATCAACAGGCCTGTACCTTTTGCTGGCATTTTA  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCACTGTATTCATAATCAACAGGCCTGTACCTTTTGCTGGCATTTTA  199

seq1  C-TTATTGTCAGAAACACTTGCTTGAAATGACATGAGCATTTCGAATAGA  241
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTGTCAGAAACACTTGCTTGAAATGACATGAGCATTTCGAATAGA  249

seq1  GTTTATCTATACTCCAGGTATCTCGTGATGTAATTAACTCAAGACACCAA  291
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTTTATCTATACTCCAGGTATCTCGTGATGTAAATAACTCAAGACACCAA  299

seq1  ATATTCCTATACAAACTTATCTACAGAAAACTCTCTAGATA-TTTAGGCT  340
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATATTCCTATACAAACTTATCTACAGAAAACTCTCTAGATATTTTAGGCT  349

seq1  CATTCCAACTAACCTGACTCACAATTTCTTTCTAACAAATTCAATATGTT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAACTAACCTGACTCACAATTTCTTTCTAACAAATTCAATATGTT  399

seq1  GCTCCCCCTACTCCCATAACTTTATCAATGAACTGACCACTGCTATTCTT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCCTACTCCCATAACTTTATCAATGAACTGACCACTGCTATTCTT  449

seq1  GGTCTTCCTTGAATCTTGAAGATGTTCCTGGTCCAACACCACAGGGTCTC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCCTTGAATCTTGAAGATGTTCCTGGTCCAACACCACAGGGTCTC  499

seq1  CTTATAGACATCACTTTTGAAATGTGTGGCTGTCACTGCTCAGAAATGAA  540
      |||||||||||||||||||||||| | |   ||||  | |||||||||||
seq2  CTTATAGACATCACTTTTGAAATGAGAGAGAGTCAGAGATCAGAAATGAA  549

seq1  GTCAGGAGCAGCGAAAGGCAAGGGAGTCTGCAGAGGCCAGACTGAGTCCA  590
      ||||||||||| ||||||||||||||| |||||||||||||  |||||||
seq2  GTCAGGAGCAGGGAAAGGCAAGGGAGTGTGCAGAGGCCAGAGGGAGTCCA  599

seq1  TTCTAACCTGTAGGTCTCCTGCTTGTACCACATGTGTTATCACATAGATT  640
      || ||||  |||||| || ||||||||||||| | | ||||||| ||| |
seq2  TTGTAACAAGTAGGTGTCATGCTTGTACCACAAGAGGTATCACAAAGAAT  649

seq1  TGGCTGTCCTAGCTTTAACTGTCCAACATAAATGCCATTCACCTTGGGAA  690
      |||||||||||||||| ||||||||||| |||| |||||| |  ||||||
seq2  TGGCTGTCCTAGCTTTTACTGTCCAACAAAAATACCATTCGCTCTGGGAA  699

seq1  AGAGAAAATCTGGATTACTTACACTACCGAGTGGATTGTCGGGGCTAGAA  740
      ||||||||| ||||||||||||||| | ||| ||||||||||||||||||
seq2  AGAGAAAATATGGATTACTTACACTTCAGAGGGGATTGTCGGGGCTAGAA  749

seq1  ACAACTGCAGATAATGTCCATATAACAAGGAAGCAAGTGTATATTATTCA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGCAGATAATGTCCATATAACAAGGAAGCAAGTGTATATTATTCA  799

seq1  ATCTGTTCTTTTTTTTTTTTCCAAAAGGGACAAATCTTAGCTAGAATCCA  840
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATCTGTTCTTTTTTTTTTTTCCAAAAGGGACAAATATTAGCTAGAATCCA  849

seq1  ATTGCAGAGTTCAAATTGAGATTCGACCACTTAGCAGTTGTATGACCATG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  ATTGCAGAGTTCAAATTGAGATTCGACCACTTAGCAGTTGTATGACCAAA  899

seq1  ACATGTGTATTAACTTTTGTGTTGCTTAGTTTTCTGACCTATGAAACATA  940
      ||||||||||||||||| ||||||  |||||||||||||||| |||||||
seq2  ACATGTGTATTAACTTTAGTGTTGTATAGTTTTCTGACCTATTAAACATA  949

seq1  ATTGGTGAGATATTACTAGATTGGGTAAGGGCATAAGAACTGGTATATAG  990
      |||||||  |||||||||||||||||||||| |||||||||||| |  ||
seq2  ATTGGTGTAATATTACTAGATTGGGTAAGGGAATAAGAACTGGT-TCAAG  998

seq1  ATATTTATATGTTATCATTACTGCAAGCCAAAGTGAATTC  1030
      ||||||||| ||||||||||  ||||||||||||||||||
seq2  ATATTTATAGGTTATCATTAAAGCAAGCCAAAGTGAATTC  1038

seq1: chrX_138383231_138384180
seq2: B6Ng01-182F03.g_73_1028

seq1  AAGTATTTTCACTAACATTTATTTCTTTATTCATTATTTTTAATAGAGAT  50
      |||||||||||||||||||| ||||||||||| ||||||||  |  | ||
seq2  AAGTATTTTCACTAACATTTTTTTCTTTATTCGTTATTTTTTCTCCAAAT  50

seq1  GGGACAGTCATTATTATATCTTAATCTGTTATTTTATTGGTATTATCCCC  100
      |||||||||||||||||||||||||||||||| ||| |||||||||||||
seq2  GGGACAGTCATTATTATATCTTAATCTGTTATGTTACTGGTATTATCCCC  100

seq1  CAAATTTTATCATTTTAGTGTTTAAAAAGTTTTCCTTTTATTAGAAACAG  150
      ||||||||||| | ||  ||||  |||||  | ||||| |||  ||||  
seq2  CAAATTTTATCTTGTTTTTGTTGGAAAAGGGTGCCTTTGATTGAAAACTC  150

seq1  ATTTTTTTCTCACATAACATATTCTAATCAGTTTCCCCTCCATCTCTTCC  200
      | ||||||||| ||||||   ||||||||  |||||||||| ||||||||
seq2  AGTTTTTTCTCTCATAACGACTTCTAATCTCTTTCCCCTCCGTCTCTTCC  200

seq1  TTCTCATTCTCCTCTCTCCCAATCTCTCCTCCCACCTGGATTCATCCCCT  250
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAATCTCCTCTCTCCCAATCTCTCCTCCCACCTGGATTCATCCCCT  250

seq1  TTCTGTCTCTAATTAGAAAAGAACAGACTTGTAAGGATAATAATAAAATA  300
      |||||||||| |||| |||| |||  || ||||||||| |||||||||||
seq2  TTCTGTCTCTCATTAAAAAATAACCCACGTGTAAGGATTATAATAAAATA  300

seq1  TGGTATAATTCAATAAAATATAATAAGATAAAACTAATATATCAGAATTA  350
      ||| ||||||||| ||||||||||||||| |||||||||||| | |||||
seq2  TGGGATAATTCAAAAAAATATAATAAGATGAAACTAATATATGATAATTA  350

seq1  GACAAAACAAGCAGAAGGAAAAAAGCTTAAGAGAGGGCACAAAAAACAGA  400
      ||||||||  ||| |||||||||||||||||||||||||| ||||||  |
seq2  GACAAAACGGGCAAAAGGAAAAAAGCTTAAGAGAGGGCACCAAAAACGAA  400

seq1  GACCCATTCATTTGCACACTCAAGAATCCCATAAAAGAACTAAGTTGAAA  450
       |||||||| ||||||| |||  ||||||||||||| |||||||||||||
seq2  CACCCATTCTTTTGCACGCTCCCGAATCCCATAAAACAACTAAGTTGAAA  450

seq1  CATATATACATAAAAGTCCCATAGGGCAAAAAGGGATGTGTGTGTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATACATAAAAGTCCCATAGGGCAAAAAGGGATGTGTGTGTGTGTG  500

seq1  AGCGTGCATAAAACTAAAATTATAAAAATTAAAAAAAAATTAAGTAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGCATAAAACTAAAATTATAAAAATTAAAAAAAAATTAAGTAAAAT  550

seq1  CCCTGACACAATCTTCTGTTGCCCATCTAGTGCTGGGCATGCAGCCTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACACAATCTTCTGTTGCCCATCTAGTGCTGGGCATGCAGCCTGCT  600

seq1  CTTAAGAGTAGTTTGTTTCCCAAGTGAGACTCCCTTTGAGGGAAATGATA  650
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAGTAGTTTGTTTCCCAAGTGAGACTCCCTTTGAGGGAAATGATA  650

seq1  TTTTCATTTGCAA-GTGCTTATAAATTAGAGTCAAGAAATTATATCTTAA  699
      ||||||||||||| ||||||||||||||||||| ||| | ||||||||||
seq2  TTTTCATTTGCAATGTGCTTATAAATTAGAGTCTAGATAATATATCTTAA  700

seq1  AAGTACTGAAATTTCTGACTAATGAATGAAATGGTTTTTATG-CTCCTTC  748
      |||||||||||||||||||||||||||||||||||||||||| | |||||
seq2  AAGTACTGAAATTTCTGACTAATGAATGAAATGGTTTTTATGCCCCCTTC  750

seq1  CCCAGAGATCCTGGTGTAATATTTTGGAACACTACCACATTGGTATGATT  798
      ||||||||| |||| ||||||||||||||| |||||||||||||||||||
seq2  CCCAGAGATACTGGAGTAATATTTTGGAACTCTACCACATTGGTATGATT  800

seq1  TGAAGCCTACCTTTAAAAATTATACATTGTCTATTGAGAAAGGGTTGGAG  848
      ||| |||| ||| |  |||||||||||||||||||||| | |||||||||
seq2  TGACGCCTGCCTGT-GAAATTATACATTGTCTATTGAGTACGGGTTGGAG  849

seq1  TTGAGTTGATATCAATA-TCGAGATTGAGATAGAGAGATATACAGATA--  895
       |||||||||||||||| |||||||||||||||| ||||| |||||||  
seq2  ATGAGTTGATATCAATAGTCGAGATTGAGATAGATAGATA-ACAGATATG  898

seq1  GGTAGTTTGTCATCTATGTTGT-CTTGATAAAACCA-GCAGCAT-TGTAA  942
      | || |||||||| |||| ||| ||||| |||||||  |||||| ||| |
seq2  GATATTTTGTCATGTATGATGTCCTTGAAAAAACCATTCAGCATGTGTTA  948

seq1  GCAGGGGA  950
       |||||||
seq2  TCAGGGGA  956