BAC Information

Click to search

BAC

Clone NameB6Ng01-189E04
ChromosomeX (Build37)
Map Location 62,565,721 - 62,566,502
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040011, Ctag2
Downstream geneLOC671840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189E04.bB6Ng01-189E04.g
ACCGA013331GA013332
length1,2001,160
definitionB6Ng01-189E04.b B6Ng01-189E04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttctttgtttccacttggttgatttcacccctgagtttgatta
tttcctgccgtctactcctcttgggtgaatttgcttcctttttttctagg
gcttttagatgtgttgtcaagctgctagtatgtgctgtctcccgtttctt
cttggagcactcagcgctatgagtttccctcttagaatgctttcattgtg
tccataggttgggtacgttgtggcttcattttcattaaacttctaaaagt
tctttagtcttctttaatctttcttgaccaagttatcatgagaaagaagt
gttattcagtcacgtgaatgctggcttccaataatataggtgcattgaga
atcagctaggccatggtcctgaatagtgattccatgtgacaatttcatat


gaattccataggagggctactgatatttgtgagttaattttatatgtagc
tactttcctgaaagattttatcatctgtaggcatttttcctgttgaagtt
gttagggtcacttatgtacactatcatattggcaaataaagatactatga
cttcttcttcctgtcttatttatatagctttgatctccttaatttgcctt
gtgttttatctaagactttaaatactgtatttaatatttatggaaagtgt
gaacaaccttgacttgttcctggttttattggaattgctttgagtttctc
ttcacttggggtaattatgactattgtcttgctgtaaattgcctttatta
catttaggtattccccttgtatgtttgatctctccaggagttttatcata
aagattgtcagattttgtcacaggtcttttctgcatctaatgagataata
acttggtttttaatcttttagtctgtttataaggtggattgtattttttt
taaatttatatatgttacatgttgtctgtatcctcaggataagacctact
taatactggtggataatcttttttatgtgctcttggattcaagttgcaaa
catttcattgagtattttttgtaactatgttaataagcaaaactgatctg
taattctctttctttgatgaacctataaccgctagtgaaatagaaacatt
aattaatcatctctcagctaatcaaagcccagggccagatggttttgaca
cagaattctataagacttttaaagaagaattaatgccaattcttctcaaa
ttattacataaaactgaaacagagaaacattttccaaatatattttatca
gttaccctgatacctaaagcacataattatatttaaaccagctgaaatac
ttgagttatgttgtattgtatcctattgggaaaggtgaattatctgaatt
aacttccttatgccatgagacaatttgtcaacaagtctaaatagtaacac
aaatttatatatctctctatataaactcctgtactcatattttcacattt
tgttgtatgcagagcaaaatattattcttgagttgtattattgtgcatta
catttactgaaagtctaggcatagttatcttgctaaagttgttggaatta
ttaaacctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_62565721_62566502
seq2: B6Ng01-189E04.g_441_1223

seq1  ATCTCTCCAGGAGTTTTATCATAAAGATTGTCAGATTTTGTCACAGGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCAGGAGTTTTATCATAAAGATTGTCAGATTTTGTCACAGGTCT  50

seq1  TTTCTGCATCTAATGAGATAATAACTTGGTTTTTAATCTTTTAGTCTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCATCTAATGAGATAATAACTTGGTTTTTAATCTTTTAGTCTGTT  100

seq1  TATAAGGTGGATTGTATTTTTTTTAAATTTATATATGTTACATGTTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGTGGATTGTATTTTTTTTAAATTTATATATGTTACATGTTGTCT  150

seq1  GTATCCTCAGGATAAGACCTACTTAATACTGGTGGATAATCTTTTTTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTCAGGATAAGACCTACTTAATACTGGTGGATAATCTTTTTTATG  200

seq1  TGCTCTTGGATTCAAGTTGCAAACATTTCATTGAGTATTTTTTGTAACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTGGATTCAAGTTGCAAACATTTCATTGAGTATTTTTTGTAACTA  250

seq1  TGTTAATAAGCAAAACTGATCTGTAATTCTCTTTCTTTGATGAACCTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATAAGCAAAACTGATCTGTAATTCTCTTTCTTTGATGAACCTATA  300

seq1  ACCGCTAGTGAAATAGAAACATTAATTAATCATCTCTCAGCTAATCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCTAGTGAAATAGAAACATTAATTAATCATCTCTCAGCTAATCAAAG  350

seq1  CCCAGGGCCAGATGGTTTTGACACAGAATTCTATAAGACTTTTAAAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGCCAGATGGTTTTGACACAGAATTCTATAAGACTTTTAAAGAAG  400

seq1  AATTAATGCCAATTCTTCTCAAATTATTACATAAAACTGAAACAGAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATGCCAATTCTTCTCAAATTATTACATAAAACTGAAACAGAGAAA  450

seq1  CATTTTCCAAATATATTTTATCAGTTACCCTGATACCTAAAGCACATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCCAAATATATTTTATCAGTTACCCTGATACCTAAAGCACATAAT  500

seq1  TATATTTAAACCAGCTGAAATACTTGAGTTATGTTGTATTGTATCCTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTAAACCAGCTGAAATACTTGAGTTATGTTGTATTGTATCCTATT  550

seq1  GGGAAAGGTGAATTATCTGAATTAACTTCCTTATGCCATGAGACAATTTT  600
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGGAAAGGTGAATTATCTGAATTAACTTCCTTATGCCATGAGACAA-TTT  599

seq1  GTCAACAAGTCTAAATAGTAACACAAATTTTATATTATCTCTCTATATAA  650
      ||||||||||||||||||||||||||| |||||| |||||||||||||||
seq2  GTCAACAAGTCTAAATAGTAACACAAA-TTTATA-TATCTCTCTATATAA  647

seq1  ACTCCTGTACTCATATTTTCAACATTTTG-TGTATGCAGAGCAAAATA-T  698
      |||||||||||||||||||| |||||||| |||||||||||||||||| |
seq2  ACTCCTGTACTCATATTTTC-ACATTTTGTTGTATGCAGAGCAAAATATT  696

seq1  AT--CTGAGTTGTAT--ATGTGCATTACCATTTACTG-AAGTCTAATTTT  743
      ||   ||||||||||   ||||||||| ||||||||| |||||||     
seq2  ATTCTTGAGTTGTATTATTGTGCATTA-CATTTACTGAAAGTCTA--GGC  743

seq1  ATATTTATCTTGTTAAAATTG-TGGAATTATTAAACCTTA  782
      ||| |||||||| |||| ||| ||||||||||||||||||
seq2  ATAGTTATCTTGCTAAAGTTGTTGGAATTATTAAACCTTA  783


| Home | SequenceCutter | Blast | Download |