BAC Information

Click to search

BAC

Clone NameB6Ng01-190C13
ChromosomeX (Build37)
Map Location 109,245,766 - 109,246,729
singlet/doubletsinglet
Overlap genenone
Upstream geneCylc1, LOC100042872, Rps6ka6, EG664791, D030011N01Rik, LOC100038989, Tex16
Downstream geneLOC622570, 4933403O08Rik, EG385407, Apool, Satl1, EG623341, 2010106E10Rik, Zfp711, Pof1b, LOC623412, EG623428, LOC100039112, Chm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190C13.bB6Ng01-190C13.g
ACCGA013987GA013988
length1,218996
definitionB6Ng01-190C13.b B6Ng01-190C13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagaattcaaatcatgtattgtcttcattatttcattaagccttg
tgttacctatatcaacatcatccagacacttattgctatcctcttgaaat
tcaataaggttacttatcctctttattaaacttcattaattctttaatac
aatttatgagtgatctgttaaattttatcatgtgattcacctaggtaatt
cttgttaaatacatttatactggactagtgtgtttgattagagaatgttg
tcttgtcctttaatgattgtttttgtgtatgccatgtgatgcaagaatgt
gcagttcttcctttgattgtgtgtctgatgagatatctttctagaacatt
atccatttcatttagattttccaattttgtggagtacatgcttttgaagt
aagacccaatgattcttttaatttctcgttgtctggtattatatcttcct
tttcatttctgattttgttgatttggatactatctctctgcaattttgtt
agtttggctaaaggtttatctatcttgtggattttctccaagacacattt
cattggttctttgtattgcttactttggttctaattgattgattttagcc
ctgattttgattatttcctgccatctacccctcttctgtatgtttgcttg
gaaaatttaaacaaaaaggatgattttattctatatatcttccctgacaa
agagatcattgagtagagagttgttcagtttctctgagtgtgtgtgtcta
tgtattcatatgtgggtatatgtgttttcagatgtatttcaatgtgtgtg
aacatgcatatgaactcaagtgtcttcttcagtaagtctccaccttaatt
tagagacaggctctgtctcttaaatacaaaattttgtcagatgtaaataa
tactttatttgcattcattgtggaccatttcataaaacaaacactgcata
ctttaaaagacaaataggcaagatttgcactctttataagaatttactgc
tccaaatggtcagaggttacaacttattggaagttctagtaaaacttttt
ttaaatctgtgaacttctgcacacttctgttcacttaaatttcaattagg
atttgtttgagaatgactgtgacacataccccgaacatgccacattatat
attacatcataatactatacagtatgaagtgattagtctacacttatcac
ttaattaagaattaatac
gaattctcacctgaggaataccaaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccctatttataatagccagaagctggaaagaacacagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
gtggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggattcccaagatataaggtacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagagacaaagtttggagcttagatga
aaggacaattaatttcttaaataattacttcaacacaagatctcacaatg
tagttgaggtacccttgagaacccgctgcctgagtagaagtgtggagatc
ataggtttgtgttaacataccacttaaaatattttttgtcatctaaatta
tatatatatatataattatatgtaattatatatatacatatatatattag
aaagttagttgggtagacaaaaaattacactaatgtagggttactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_109245766_109246729
seq2: B6Ng01-190C13.b_317_1261

seq1  TGTGTATGCCATGTGATGCAAGAATGTGCAGTTCTTCCTTTGATTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGCCATGTGATGCAAGAATGTGCAGTTCTTCCTTTGATTGTGTG  50

seq1  TCTGATGAGATATCTTTCTAGAACATTATCCATTTCATTTAGATTTTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGAGATATCTTTCTAGAACATTATCCATTTCATTTAGATTTTCCA  100

seq1  ATTTTGTGGAGTACATGCTTTTGAAGTAAGACCCAATGATTCTTTTAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTGGAGTACATGCTTTTGAAGTAAGACCCAATGATTCTTTTAATT  150

seq1  TCTCGTTGTCTGGTATTATATCTTCCTTTTCATTTCTGATTTTGTTGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTTGTCTGGTATTATATCTTCCTTTTCATTTCTGATTTTGTTGATT  200

seq1  TGGATACTATCTCTCTGCAATTTTGTTAGTTTGGCTAAAGGTTTATCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACTATCTCTCTGCAATTTTGTTAGTTTGGCTAAAGGTTTATCTAT  250

seq1  CTTGTGGATTTTCTCCAAGACACATTTCATTGGTTCTTTGTATTGCTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGATTTTCTCCAAGACACATTTCATTGGTTCTTTGTATTGCTTAC  300

seq1  TTTGGTTCTAATTGATTGATTTTAGCCCTGATTTTGATTATTTCCTGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTCTAATTGATTGATTTTAGCCCTGATTTTGATTATTTCCTGCCA  350

seq1  TCTACCCCTCTTCTGTATGTTTGCTTGGAAAATTTAAACAAAAAGGATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCCTCTTCTGTATGTTTGCTTGGAAAATTTAAACAAAAAGGATGA  400

seq1  TTTTATTCTATATATCTTCCCTGACAAAGAGATCATTGAGTAGAGAGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCTATATATCTTCCCTGACAAAGAGATCATTGAGTAGAGAGTTG  450

seq1  TTCAGTTTCTCTGAGTGTGTGTGTCTATGTATTCATATGTGGGTATATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTTCTCTGAGTGTGTGTGTCTATGTATTCATATGTGGGTATATGT  500

seq1  GTTTTCAGATGTATTTCAATGTGTGTGAACATGCATATGAACTCAAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAGATGTATTTCAATGTGTGTGAACATGCATATGAACTCAAGTGT  550

seq1  CTTCTTCAGTAAGTCTCCACCTTAATTTAGAGACAGGCTCTGTCTCTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCAGTAAGTCTCCACCTTAATTTAGAGACAGGCTCTGTCTCTTAA  600

seq1  ATACAAAATTTTGTCAGATGTAAATAATACTTTATTTGCATTCATTGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAATTTTGTCAGATGTAAATAATACTTTATTTGCATTCATTGTGG  650

seq1  ACCATTTCATAAAACAAACACTGCATACTTTAAAAGACAAATAGGCAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTCATAAAACAAACACTGCATACTTTAAAAGACAAATAGGCAAGA  700

seq1  TTTGCACTCTTTATAAAGAATTTACTGCTCCAAATGGTCAGAGGTTACAA  750
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTGCACTCTTTAT-AAGAATTTACTGCTCCAAATGGTCAGAGGTTACAA  749

seq1  CTTATT-GAAGTTCTAGTAAAACCTTTTTTTAAATCTGTGAACTTCTGCA  799
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  CTTATTGGAAGTTCTAGTAAAA-CTTTTTTTAAATCTGTGAACTTCTGCA  798

seq1  CACTTCTGTTCACTTAAATTTCCAATTA-GATTTGTTTGAAGATGAACTG  848
      ||||||||||||||||||||| |||||| |||||||||||  ||| ||||
seq2  CACTTCTGTTCACTTAAATTT-CAATTAGGATTTGTTTGAGAATG-ACTG  846

seq1  TGACACATACCCCAAAACATG-CACATATATAT-TTACATCAATAAATAC  896
      |||||||||||||  |||||| ||||| ||||| ||||||||   |||||
seq2  TGACACATACCCC-GAACATGCCACAT-TATATATTACATCA--TAATAC  892

seq1  TATAACAGTTAATGAGAAAGTAGATTTTTATGTCATCAATTTTAATCACT  946
      ||| |||||  |||   |||| ||||     |||  || ||   ||||||
seq2  TAT-ACAGT--ATG---AAGT-GATT----AGTCTACACTT---ATCACT  928

seq1  TAATTTAAGAATAAATAC  964
      ||| |||||||| |||||
seq2  TAA-TTAAGAATTAATAC  945