BAC Information

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BAC

Clone NameB6Ng01-193N12
ChromosomeX (Build37)
Map Location 71,082,311 - 71,179,631
singlet/doubletdoublet
Overlap geneL1cam, Avpr2, Arhgap4, Ard1, Renbp
Upstream geneGabrq, Magea9, Cetn2, Nsdhl, Zfp185, Pnma5, LOC628237, Pnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4
Downstream geneHcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg, EG628456, LOC628465, LOC100041484, LOC674920, EG245472, Olfr1326-ps1, Olfr1325, EG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573, LOC100041642, LOC667437
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193N12.bB6Ng01-193N12.g
ACCGA016698GA016699
length744818
definitionB6Ng01-193N12.b B6Ng01-193N12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,082,311 - 71,083,037)(71,178,830 - 71,179,631)
sequence
gaattcagtaagtgaagggaaaggagaaagagcagcttccccttcttttc
aaccaagatcatttttgtttatttctttgtttacatatatatatatatat
atatatatatatatatatatatatatatatatttaatgtatatgagtaca
ctgtagctgtcttcagacacaccaggagagagcatcggatcctattacag
atggttgtgacccaccatgtggttgctgggaattgaactcaggacctctg
ggagagcagtcagtgctcttaaccactgagccatctcgcaagccctcaac
tgaagtctttaagactctgctttagaatttgtatttgcctttaacaatat
tcttcctgggctaaagaggaaaactggctggcttcaaactcagattgacc
tgcctctgcttccccagtgctgggattgaaggtgtgtgccactactgcct
tatatcagttcttccaaatgaatattcagttttgtgacagccaagtaaag
ctgtttgaataacaatctatgtcctgccactgttcatcccacaaatgcca
gtagaaaaaaccactgatccaaaatcatggtcatactaaattatagcaag
caattaatttaagtcaagctttttaaattcacatacatgaagtacctgct
cctaaggcagggtttcaatagattggcattgcacatggggaagatgaggc
ttggatgttggttttttgtttggtctgtctgcctgcatttgttt
gaattcctatatctctactttctttccaacccaacactaggtaggagaga
aaggttagaggggaaaggaagcaacctctttcagccaacaaaatagacta
cttcctgctcattagggtcatcctgtttcatggggcaagtccagtctttg
tcatcagaatattcagcagcccagcacaacagccatccagcaatagcaaa
tccaacagcagggatggggggcaggaccctcagcaggaaggaggaacagt
agccacagcaggccttcttggatattgaattttttttaattaggtatttt
cttcatttacaggggatcttgaatttatactctctccagagtccccaaaa
ttaaactatctgcagctggcaaaaatcatgcgcccccacccccatcaaga
gcataagacaatcatagttgatgctgtggatgaaatgaaatagccctata
tcccacacctgggataaaacacaaacattcatataacataactggatttt
taaataaaccaaaacttactacagtttgttttttgaaggtatcctgtcag
taaagagagcaaaggaaagttccactaacctatgtagctggtctttgcta
cattgtgggctcttttttcctcaccctttatcctccagtttatcccccta
acactaaataggagaggaacaaggatagagatgagaggaattaggaaaat
ccctgaatgtaatttctttttgtttcttctttgaccactgctactaacaa
actgcaaccaatctccataaatgaccaacattcaccaaccttacctctcg
ggggtccttgtatttata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_71082311_71083037
seq2: B6Ng01-193N12.b_52_795

seq1  GAATTCAGTAAGTGAAGGGAAAGGAGAAAGAGCAGCTTCCCCTTCTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAGTGAAGGGAAAGGAGAAAGAGCAGCTTCCCCTTCTTTTC  50

seq1  AACCAAGATCATTTTTGTTTATTTCTTTGTTTACATATATATATATATAT  100
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  AACCAAGATCATTTTTGTTTATTTCTTTGTTTAC--ATATATATATATAT  98

seq1  ATATATATATATATATATATATATATATATATATTTAATGTATATGAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATTTAATGTATATGAGTA  148

seq1  CACTGTAGCTGTCTTCAGACACACCAGGAGAGAGCATCGGATCCTATTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAGCTGTCTTCAGACACACCAGGAGAGAGCATCGGATCCTATTAC  198

seq1  AGATGGTTGTGACCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTTGTGACCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTC  248

seq1  TGGGAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCGCAAGCCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCGCAAGCCCTCA  298

seq1  ACTGAAGTCTTTAAGACTCTGCTTTAGAATTTGTATTTGCCTTTAACAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGTCTTTAAGACTCTGCTTTAGAATTTGTATTTGCCTTTAACAAT  348

seq1  ATTCTTCCTGGGCTAAAGAGGAAAACTGGCTGGCTTCAAACTCAGATTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCCTGGGCTAAAGAGGAAAACTGGCTGGCTTCAAACTCAGATTGA  398

seq1  CCTGCCTCTGCTTCCCCAGTGCTGGGATTGAAGGTGTGTGCCACTACTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCTGCTTCCCCAGTGCTGGGATTGAAGGTGTGTGCCACTACTGC  448

seq1  CTTATATCAGTTCTTCCAAATGAATATTCAGTTTTGTGACAGCCAAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATCAGTTCTTCCAAATGAATATTCAGTTTTGTGACAGCCAAGTAA  498

seq1  AGCTGTTTGAATAACAATCTATGTCCTGCCACTGTTCATCCCACAAATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTTGAATAACAATCTATGTCCTGCCACTGTTCATCCCACAAATGC  548

seq1  CAGTAG-AAAAACCACTGATCCAAAATCATGGTCAAACTAAATTATAGCA  599
      |||||| |||||||||||||||||||||||||||| ||||||||||||||
seq2  CAGTAGAAAAAACCACTGATCCAAAATCATGGTCATACTAAATTATAGCA  598

seq1  AGCAATTAA-TTAAGTCAAGC-TTTTAAATTCACATACATGAAGTACCTG  647
      ||||||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  AGCAATTAATTTAAGTCAAGCTTTTTAAATTCACATACATGAAGTACCTG  648

seq1  CTCCTAAGGCAGGG-TTCAATAGATTGGCATTGCACATGGGGAAGATGAG  696
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTCCTAAGGCAGGGTTTCAATAGATTGGCATTGCACATGGGGAAGATGAG  698

seq1  GCTTGGTTGTTGGTTTTTTGTTTG---------------TTTGTTT  727
      |||||| |||||||||||||||||               |||||||
seq2  GCTTGGATGTTGGTTTTTTGTTTGGTCTGTCTGCCTGCATTTGTTT  744

seq1: chrX_71178830_71179631
seq2: B6Ng01-193N12.g_84_885 (reverse)

seq1  TATAAATACAAGGACCCCCGAGAGGTAAGGTTGGTGAATGTTGGTCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATACAAGGACCCCCGAGAGGTAAGGTTGGTGAATGTTGGTCATTT  50

seq1  ATGGAGATTGGTTGCAGTTTGTTAGTAGCAGTGGTCAAAGAAGAAACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGATTGGTTGCAGTTTGTTAGTAGCAGTGGTCAAAGAAGAAACAAA  100

seq1  AAGAAATTACATTCAGGGATTTTCCTAATTCCTCTCATCTCTATCCTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTACATTCAGGGATTTTCCTAATTCCTCTCATCTCTATCCTTGT  150

seq1  TCCTCTCCTATTTAGTGTTAGGGGGATAAACTGGAGGATAAAGGGTGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCTATTTAGTGTTAGGGGGATAAACTGGAGGATAAAGGGTGAGG  200

seq1  AAAAAAGAGCCCACAATGTAGCAAAGACCAGCTACATAGGTTAGTGGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAGCCCACAATGTAGCAAAGACCAGCTACATAGGTTAGTGGAAC  250

seq1  TTTCCTTTGCTCTCTTTACTGACAGGATACCTTCAAAAAACAAACTGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTGCTCTCTTTACTGACAGGATACCTTCAAAAAACAAACTGTAG  300

seq1  TAAGTTTTGGTTTATTTAAAAATCCAGTTATGTTATATGAATGTTTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTTGGTTTATTTAAAAATCCAGTTATGTTATATGAATGTTTGTGT  350

seq1  TTTATCCCAGGTGTGGGATATAGGGCTATTTCATTTCATCCACAGCATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCCAGGTGTGGGATATAGGGCTATTTCATTTCATCCACAGCATCA  400

seq1  ACTATGATTGTCTTATGCTCTTGATGGGGGTGGGGGCGCATGATTTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGATTGTCTTATGCTCTTGATGGGGGTGGGGGCGCATGATTTTTGC  450

seq1  CAGCTGCAGATAGTTTAATTTTGGGGACTCTGGAGAGAGTATAAATTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCAGATAGTTTAATTTTGGGGACTCTGGAGAGAGTATAAATTCAA  500

seq1  GATCCCCTGTAAATGAAGAAAATACCTAATTAAAAAAAATTCAATATCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCCTGTAAATGAAGAAAATACCTAATTAAAAAAAATTCAATATCCA  550

seq1  AGAAGGCCTGCTGTGGCTACTGTTCCTCCTTCCTGCTGAGGGTCCTGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCCTGCTGTGGCTACTGTTCCTCCTTCCTGCTGAGGGTCCTGCCC  600

seq1  CCCATCCCTGCTGTTGGATTTGCTATTGCTGGATGGCTGTTGTGCTGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCCTGCTGTTGGATTTGCTATTGCTGGATGGCTGTTGTGCTGGGC  650

seq1  TGCTGAATATTCTGATGACAAAGACTGGACTTGCCCCATGAAACAGGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAATATTCTGATGACAAAGACTGGACTTGCCCCATGAAACAGGATG  700

seq1  ACCCTAATGAGCAGGAAGTAGTCTATTTTGTTGGCTGAAAGAGGTTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAATGAGCAGGAAGTAGTCTATTTTGTTGGCTGAAAGAGGTTGCTT  750

seq1  CCTTTCCCCTCTAACCTTTCTCTCCTACCTAGTGTTGGGTTGGAAAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCCTCTAACCTTTCTCTCCTACCTAGTGTTGGGTTGGAAAGAAA  800

seq1  GT  802
      ||
seq2  GT  802