This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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BAC
Clone Name
B6Ng01-195J23
Chromosome
X (Build37)
Map Location
119,127,525 - 119,127,792
singlet/doublet
singlet
Overlap gene
none
Upstream gene
LOC385419
,
EG434907
,
EG245575
Downstream gene
LOC100039544
,
Nap1l3
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC385419
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:385419
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 17 Proteins
pseudo
: _no_value
name
EG434907
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:434907
MGI:3647868
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 329 ESTs, 8 Proteins
name
EG245575
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:245575
MGI:3647043
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 13 Proteins
name
LOC100039544
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100039544
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 8 Proteins
pseudo
: _no_value
name
Nap1l3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:54561
MGI:1859565
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG434907
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149272151
GeneID:434907
MGI:3647868
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 329 ESTs, 8 Proteins
product
: predicted gene, EG434907
transcript_id
: XM_486849.5
name
EG245575
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149272153
GeneID:245575
MGI:3647043
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 13 Proteins
product
: predicted gene, EG245575
transcript_id
: XM_142100.7
name
Nap1l3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:20270268
GeneID:54561
MGI:1859565
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: nucleosome assembly protein 1-like 3
transcript_id
: NM_138742.1
name
EG434907
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:149272152
GeneID:434907
MGI:3647868
definition
codon_start
: 1
product
: similar to Ubiquitin-like, containing PHD and RING finger domains, 1
protein_id
: XP_486849.5
name
EG245575
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:149272154
GeneID:245575
MGI:3647043
definition
codon_start
: 1
product
: similar to RIKEN cDNA 9230105E10 gene
protein_id
: XP_142100.7
name
Nap1l3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:20270269
CCDS:CCDS30372.1
GeneID:54561
MGI:1859565
definition
codon_start
: 1
product
: nucleosome assembly protein 1-like 3
protein_id
: NP_620081.1
name
LOC385419
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:385419
definition
number
: 2
pseudo
: _no_value
name
LOC385419
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:385419
definition
number
: 1
pseudo
: _no_value
name
LOC100039544
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149272157
GeneID:100039544
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 8 Proteins
product
: similar to SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 3
pseudo
: _no_value
transcript_id
: XR_031017.1
clone name
MSMg01-318O08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-195L14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-045J03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-480C14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-533E22
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-435D19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-215H18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-371K22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-483I21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-540I20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-494L22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-141D01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-455F13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-052P14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-435E08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-378A02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-463L02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-046B19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-387O05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-105F01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-395C19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-547K10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-392M04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-117F07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-461B22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-096G07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-471N06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-390E01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-072B19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-365I07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-378E06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-262D24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-015G09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-315B02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-101C15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-123M06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-313H03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-001K05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-283P10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-103I23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-325D05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-086O16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-015O09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-244J18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-137M13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-003D17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-195J23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-151F07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-262C06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-102P07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-037D21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-186B07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-263B02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-193G10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-256B23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-175B12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-318E10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-020K01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-308C08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-144J17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-302P21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-269L09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-193H07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-052M07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-337B07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-049D13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-152J15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-065K09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-047I18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-317P17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-068O22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-300O16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-199K22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-274E18
singlet/doublet
doublet
plural/unique
unique