BAC Information

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BAC

Clone NameB6Ng01-196B20
ChromosomeX (Build37)
Map Location 41,275,834 - 41,454,139
singlet/doubletdoublet
Overlap genenone
Upstream geneOdz1, Gm362, LOC100039977, LOC100039987
Downstream geneLOC637141, Wdr40c, Wdr40b, LOC665585, 1110059M19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196B20.bB6Ng01-196B20.g
ACCGA018342GA018343
length1,1571,098
definitionB6Ng01-196B20.b B6Ng01-196B20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,452,975 - 41,454,139)(41,275,834 - 41,276,906)
sequence
gaattctccttaaaaagggacggggtttcgttttctctctctcttgcttc
ttgctctcttgcttcttgcactctggctcctgaagatgtaagcaataaag
ttttgccgcagaagattctggtctgtggtgttcttcctggccagtcgtga
gaacgcgtctaataacagaaaatatttgaaatgtaagtaaagaaaatatc
cataaaggtctacctagttctgcttgcacagcatttgcattaaagttcta
tattttatgtaaattttgtatatgaattttgatgtacattttgtaaataa
aacagaggttgtcatgctcacaatggaagcactttttaacagagttattt
acccaaattaaaattttctttttgatcatctatttgtattgtctctagag
tattattaaccatttataaagtccaatagatttttcttttcaaattaaca
tttctactttgcctgttattcctttaactgtgacaacctctttactttat
taaaatatcattactactttttacctttctaggaattggatactaagcat
tgatatcaagatctgttcaataacaatatctactatatttatctaggatc
attggaagaaattcattttgttattgttattttaaattgaccctaattaa
tggtccaggatgcatatagatattgtgtagccagatatacccacttagaa
aatcttcagtattgtctttaaagaaggggatactgtagccttcaaagcaa
tcacaaaccttttgcctggctctaacctcattatagcatttcaaaagaga
attcaaccttctgtgcagtggaccgttgatacatttgcaattaagaaatg
tatataataatcgtcatgcttactttcctagccttggctataactgtctt
tgtatgctgccaaagtcatactcagagttcatgttttcagttaatcttgt
ttattaatcacactcaacctttttgtcatctgtctgaggtacttatatac
cctaatcaagctgtctcattcatgcgattttataattaatttccctcact
ctctcactgagtttcatggcttgaggtaccatataccttttaggttagcc
ccctttctcagtattttactgaggcttgggatcaatgaaaaacttgagta
ctgtata
gaattcctcagtacatttaatggctttatcagggaattattaaagacatt
agggttgaattttttaagaaatttaatttaaataatgcaatgaaaaattc
tttatgctgcctgaaataattttatatacattagtttcttgcttactgat
atttaaaatcaatcaacctgggtttgtaattatggctaaatatggcacac
agttgacctccatttgactgacagagccgagagtctgactcctttgtaga
tccttgaagagaatcttttcttagcagagaaatgtaggtataatgctagg
ctatatatcttcattagttttccttctaacattgcattaataatttgtca
aaatatactcccttgtgcataagtcaccaaacctttccttctttttttct
cttttgtttattgcctctagcatcagactaaaattttaccccaacccccc
ccaaaacaaacaaacaaacaaacaaacaaacaaaaaaagctgtaagtgag
aaattccacaaacagataatttcagtatagaaagagcagtgcattttctt
agaaaaaaaaaaaaactgacaggtactgtaatgaggaatagcaaactttg
cactaaagtttcatttgatggatttatagcttgtcaaataaagatgtttt
gacactgcagtgacatacatatgcctttgagtcaggaatgtcagccttta
atcttcagtcatgtattatagtttttaggaaaagacaattaccttgtcat
acattttgtcccaagatcttttaggtaacattcaatagctgatttctgta
aagtcctgctcctttttgctccacctcattagagatatagaattatctaa
ctcacccatcctgtaaattgagtgatacctttttatttagtttttattag
aaaataaactttttctctttctctgaatccatttttttatattttacttt
caatatattttttccatttcagaatgtcctcctaaaccagttggattaag
catttttattagcaccatgctttccttcggaaatgattggttctaagagt
tttaaacaggtagctatataggatgacttagataatggtggaattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_41452975_41454139
seq2: B6Ng01-196B20.b_45_1201 (reverse)

seq1  TATACAGTACTCAATTTTTTTCCATTGATCACAAGCTTCAGTAAAATACT  50
      |||||||||||||| |||||  |||||||| ||||| |||||||||||||
seq2  TATACAGTACTCAAGTTTTT--CATTGATCCCAAGCCTCAGTAAAATACT  48

seq1  GAAGAAAGGGGCTAACCTAAAAAGTATATGGTACCTCAAAGCCATGAAAA  100
      ||  || ||||||||||||||| |||||||||||||| ||||||||||| 
seq2  GAGAAAGGGGGCTAACCTAAAAGGTATATGGTACCTC-AAGCCATGAAA-  96

seq1  CTTCAGTGAGAGAGTTGAGGGAAATTAATTATAAAATCGCATGAATGAGA  150
        |||||||||||| |||||||||||||||||||||||||||||||||||
seq2  -CTCAGTGAGAGAG-TGAGGGAAATTAATTATAAAATCGCATGAATGAGA  144

seq1  CAGCTTGATTTAGGGTAATATAAGTACCTCAGACAGATGACAAAAAGGTT  200
      |||||||| ||||||| |||||||||||||||||||||||||||||||||
seq2  CAGCTTGA-TTAGGGT-ATATAAGTACCTCAGACAGATGACAAAAAGGTT  192

seq1  GAGTGTGATTAATAAACAAGATTAACTG-AAACATGAACTCTGAGTATTG  249
      |||||||||||||||||||||||||||| |||||||||||||||||| ||
seq2  GAGTGTGATTAATAAACAAGATTAACTGAAAACATGAACTCTGAGTA-TG  241

seq1  ACTTTGGCAGCATACAAAGACAGTTATAGCCAAGGCTAGGAAAGTAAGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGCAGCATACAAAGACAGTTATAGCCAAGGCTAGGAAAGTAAGCA  291

seq1  TGACGATTATTATATACATTTCTTAATTGCAAATGTATCAACGGTCCACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGATTATTATATACATTTCTTAATTGCAAATGTATCAACGGTCCACT  341

seq1  GCACAGAAGGTTGAATTCTCTTTTGAAATGCTATAATGAGGTTAGAGCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAAGGTTGAATTCTCTTTTGAAATGCTATAATGAGGTTAGAGCCA  391

seq1  GGCAAAAGGTTTGTGATTGCTTTGAAGGCTACAGTATCCCCTTCTTTAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGGTTTGTGATTGCTTTGAAGGCTACAGTATCCCCTTCTTTAAA  441

seq1  GACAATACTGAAGATTTTCTAAGTGGGTATATCTGGCTACACAATATCTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATACTGAAGATTTTCTAAGTGGGTATATCTGGCTACACAATATCTA  491

seq1  TATGCATCCTGGACCATTAATTAGGGTCAATTTAAAATAACAATAACAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATCCTGGACCATTAATTAGGGTCAATTTAAAATAACAATAACAAA  541

seq1  ATGAATTTCTTCCAATGATCCTAGATAAATATAGTAGATATTGTTATTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTTCTTCCAATGATCCTAGATAAATATAGTAGATATTGTTATTGA  591

seq1  ACAGATCTTGATATCAATGCTTAGTATCCAATTCCTAGAAAGGTAAAAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCTTGATATCAATGCTTAGTATCCAATTCCTAGAAAGGTAAAAAG  641

seq1  TAGTAATGATATTTTAATAAAGTAAAGAGGTTGTCACAGTTAAAGGAATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATGATATTTTAATAAAGTAAAGAGGTTGTCACAGTTAAAGGAATA  691

seq1  ACAGGCAAAGTAGAAATGTTAATTTGAAAAGAAAAATCTATTGGACTTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAAAGTAGAAATGTTAATTTGAAAAGAAAAATCTATTGGACTTTA  741

seq1  TAAATGGTTAATAATACTCTAGAGACAATACAAATAGATGATCAAAAAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGTTAATAATACTCTAGAGACAATACAAATAGATGATCAAAAAGA  791

seq1  AAATTTTAATTTGGGTAAATAACTCTGTTAAAAAGTGCTTCCATTGTGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTAATTTGGGTAAATAACTCTGTTAAAAAGTGCTTCCATTGTGAG  841

seq1  CATGACAACCTCTGTTTTATTTACAAAATGTACATCAAAATTCATATACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAACCTCTGTTTTATTTACAAAATGTACATCAAAATTCATATACA  891

seq1  AAATTTACATAAAATATAGAACTTTAATGCAAATGCTGTGCAAGCAGAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTACATAAAATATAGAACTTTAATGCAAATGCTGTGCAAGCAGAAC  941

seq1  TAGGTAGACCTTTATGGATATTTTCTTTACTTACATTTCAAATATTTTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGACCTTTATGGATATTTTCTTTACTTACATTTCAAATATTTTCT  991

seq1  GTTATTAGACGCGTTCTCACGACTGGCCAGGAAGAACACCACAGACCAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTAGACGCGTTCTCACGACTGGCCAGGAAGAACACCACAGACCAGA  1041

seq1  ATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGAGCCAGAGTGCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGAGCCAGAGTGCA  1091

seq1  AGAAGCAAGAGAGCAAGAAGCAAGAGAGAGAGAAAACGAAACCCCGTCCC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAAGAGAGCAAGAAGCAAGAGAGAGAGAAAACGAAACCCCGTCCC  1141

seq1  TTTTTAAGGAGAATTC  1165
      ||||||||||||||||
seq2  TTTTTAAGGAGAATTC  1157

seq1: chrX_41275834_41276906
seq2: B6Ng01-196B20.g_65_1162

seq1  GAATTCCTCAGTACATTTAATGGCTTTATCAGGGAATTATTAAAGACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGTACATTTAATGGCTTTATCAGGGAATTATTAAAGACATT  50

seq1  AGGGTTGAATTTTTTAAGAAATTTAATTTAAATAATGCAATGAAAAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGAATTTTTTAAGAAATTTAATTTAAATAATGCAATGAAAAATTC  100

seq1  TTTATGCTGCCTGAAATAATTTTATATACATTAGTTTCTTGCTTACTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCTGCCTGAAATAATTTTATATACATTAGTTTCTTGCTTACTGAT  150

seq1  ATTTAAAATCAATCAACCTGGGTTTGTAATTATGGCTAAATATGGCACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAATCAATCAACCTGGGTTTGTAATTATGGCTAAATATGGCACAC  200

seq1  AGTTGACCTCCATTTGACTGACAGAGCCGAGAGTCTGACTCCTTTGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGACCTCCATTTGACTGACAGAGCCGAGAGTCTGACTCCTTTGTAGA  250

seq1  TCCTTGAAGAGAATCTTTTCTTAGCAGAGAAATGTAGGTATAATGCTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAAGAGAATCTTTTCTTAGCAGAGAAATGTAGGTATAATGCTAGG  300

seq1  CTATATATCTTCATTAGTTTTCCTTCTAACATTGCATTAATAATTTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATATCTTCATTAGTTTTCCTTCTAACATTGCATTAATAATTTGTCA  350

seq1  AAATATACTCCCTTGTGCATAAGTCACCAAACCTTTCCTTCTTTTTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATACTCCCTTGTGCATAAGTCACCAAACCTTTCCTTCTTTTTTTCT  400

seq1  CTTTTGTTTATTGCCTCTAGCATCAGACTAAAATTTTACCCCAACCCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTTATTGCCTCTAGCATCAGACTAAAATTTTACCCCAACCCCCC  450

seq1  CCAAAACAAACAAACAAACAAACAAACAAACAAAAAAAGCTGTAAGTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACAAACAAACAAACAAACAAACAAACAAAAAAAGCTGTAAGTGAG  500

seq1  AAATTCCACAAACAGATAATTTCAGTATAGAAAGAGCAGTGCATTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCACAAACAGATAATTTCAGTATAGAAAGAGCAGTGCATTTTCTT  550

seq1  AGAAAAAAAAAAAAACTGACAGGTACTGTAATGAGGAATAGCAAACTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAAAAAAACTGACAGGTACTGTAATGAGGAATAGCAAACTTTG  600

seq1  CACTAAAGTTTCATTTGATGGATTTATAGCTTGTC-AATAAAGATGTTTT  649
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CACTAAAGTTTCATTTGATGGATTTATAGCTTGTCAAATAAAGATGTTTT  650

seq1  GACACTGCAGTGACATACATATGCCTTTGAGTCAGGAATGTCAGCCTTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGCAGTGACATACATATGCCTTTGAGTCAGGAATGTCAGCCTTTA  700

seq1  ATCTTCAGTCATGTATTATAGTTTTTAGGAAAAGACAATTACCTTGTCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAGTCATGTATTATAGTTTTTAGGAAAAGACAATTACCTTGTCAT  750

seq1  ACATTTTGTCCCAAGATCTTTTAGGTAACATTCAATAGCTGATTTCTGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTGTCCCAAGATCTTTTAGGTAACATTCAATAGCTGATTTCTGTA  800

seq1  AAGTCCTGCTCC-TTTTGCTCCACCTCATTAGAGATATAGAATTATCTAA  848
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTGCTCCTTTTTGCTCCACCTCATTAGAGATATAGAATTATCTAA  850

seq1  CTCA-CCATCCTGTAAATTGAGTGATACC-TTTTATTTAGTTTTTATTAG  896
      |||| |||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTCACCCATCCTGTAAATTGAGTGATACCTTTTTATTTAGTTTTTATTAG  900

seq1  -AAATAAAC-TTTTCTC-TTCTCTGAATCCA-TTTTTTATA-TTTACTTT  941
       |||||||| ||||||| ||||||||||||| ||||||||| ||||||||
seq2  AAAATAAACTTTTTCTCTTTCTCTGAATCCATTTTTTTATATTTTACTTT  950

seq1  C-ATATA-TTTTTCCA-TTCAGAATGTCC-CCT-AACCAG-TGGATT-AG  984
      | ||||| |||||||| |||||||||||| ||| |||||| |||||| ||
seq2  CAATATATTTTTTCCATTTCAGAATGTCCTCCTAAACCAGTTGGATTAAG  1000

seq1  CATTTT--ATAGCA-CATGC-TTCCTTCGGAAATGATTG--TC-CAGAGT  1027
      ||||||   ||||| ||||| ||||||||||||||||||  ||  |||||
seq2  CATTTTTATTAGCACCATGCTTTCCTTCGGAAATGATTGGTTCTAAGAGT  1050

seq1  TTTAACCA-GTAGCTATATAGAATGAC-TAGATAATGTTGAAATTTTT  1073
      ||||| || |||||||||||| ||||| ||||||||| || |||||||
seq2  TTTAAACAGGTAGCTATATAGGATGACTTAGATAATGGTGGAATTTTT  1098