BAC Information

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BAC

Clone NameB6Ng01-197D20
ChromosomeX (Build37)
Map Location 149,743,408 - 149,855,414
singlet/doubletdoublet
Overlap geneKlf8, EG635136
Upstream gene2900056M20Rik, Tspyl2, Gpr173, LOC207318, EG667113, EG635412, LOC635396, EG667130, Shroom2, Gpr143, LOC100039874, LOC667147, EG624124, Usp51, LOC635253, Mageh1, EG385454, EG436240, Rragb, LOC100039932
Downstream geneUbqln2, Cypt3, LOC100039998, LOC667241, Kctd12b, 2210013O21Rik, Smt3h1-ps, Spin2, 4921511M17Rik, OTTMUSG00000019268, LOC625650, LOC100040020, EG546397, OTTMUSG00000019256, EG434874, LOC635580, EG625767, LOC270665, LOC100040076, 4930524N10Rik, EG434879
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197D20.bB6Ng01-197D20.g
ACCGA019158GA019159
length1,095985
definitionB6Ng01-197D20.b B6Ng01-197D20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,743,408 - 149,744,506)(149,854,434 - 149,855,414)
sequence
gaattctgttactccatcagtggcttggaaagtcagatacatcttgagaa
ctctgaaatagtaagtagtatcttcttttttaaattttattctcaaaata
catttcttttacttatttttgttagttctctgaaatttgtatacaatgta
tttcagtcatattgacctcatccccaatttccctcagatccacacttccc
tttgctatgtgcccaattttgtggatttgcacccatcaactctaatttct
aatgtccatatattcatgggtgtgtggtctctaactgaattgtggtcaac
ctagcaggggcaatattcttgaagaaatctgactctgcttctcctaatgg
ctatcagttgcctcaactaggggtgggacttcatgtctctcttccctctc
cagtctgagatttaggctggcttgtgcttacatggggcttatgtatactg
tgccaatcactgtgaattcatatgtacagctgctctgttgcattcggaaa
acagcttgatatctccatgttctgtgactgtgtcttttcagcagtagtgt
gttattctcaaatatattaatatagtgcctggctttgtataaaaacttca
aagaactaataaaaacaagtaaaataaatgtattttaagaatcatttaga
aatcagttataaaggttatatatgtacgtgagacctacagtaactgaact
gagcccatgctatttattgtgaaggagtttttaatgtaccttggttttgt
tttgtttttactgtatatgtatttatttgttgtgtgtatttctatctcag
atttgatttctgtatagtaaatgtggtgctcagaggttcatagatgggat
ggagtaagagaaagattagaaattcttaaatgagaagaaattccacagtg
taggatgtagagtaacttgaccatgctttcattggtgtaggacacagggt
agttttctttattctttacgactattgtcatcgagccctaggatcaacat
gtattgcgatagttgaagactttttggatggaggaaagagggaatcagag
atcagttgtactccccagagccttccttgcctctaggccaggtcc
gaattcacacgggacatgatacattcccacagttcaaaggctgaagcagg
aggaccctaaatttgaggccagctttggttacatagaaagaccatttcta
agggtataggaactccacaggaagaccaacagagtcaactaacctggacc
ctgggctctcagagactgaaccaccaaccaaagagcatgcacaggctgga
cctaggcctccccgcacatatgtagcagatgtgccgcttggtcttcatgc
aaatcccaacaactggagcaggggctatcccaaaagctgttccctggcaa
tgggatatattctactagctgggctgccttgtctggcctcagtggaagaa
aaagcagctagccttgaagagacttgaagtgccagggtgaggggataccc
aggagggcccctattcactcagagaagggggaaagggatcgtaggagggg
gtgactgggacggggacactgaactggaataaataaaaacattaaataaa
ttaaagaaaagaaaaactctttctaaaagccagtgacaaaaatggagtca
tttgtggcagccatttcaaaaggagctaaaaccaatacattaacaataag
ccatttttatgcatagttatttgtaaagagaaaaaagagatgaaccaaaa
aaaaaattccttcctctcttacaataatatagtagctggagccagaccaa
gtgactcacgatatcttacacaatttgaccctagctcttaaaacctggaa
cctcaccctcaacaggcagtctcagaaagaaaaggatattatacaattta
ctgagctgagagtgagctccacttcctcttatctgttgactgggcctgaa
ggcaaggacatataacttctcttaactgattccacaggaccccatgcccc
tggaaagaagatgattatctttcctctgatgaattcacctatttgggctt
atgttgcccgatggataatcttttattaaaacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_149743408_149744506
seq2: B6Ng01-197D20.b_44_1138

seq1  GAATTCTGTTACTCCATCAGTGGCTTGGAAAGTCAGATACATCTTGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTACTCCATCAGTGGCTTGGAAAGTCAGATACATCTTGAGAA  50

seq1  CTCTGAAATAGTAAGTAGTATCTTCTTTTTTAAATTTTATTCTCAAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAATAGTAAGTAGTATCTTCTTTTTTAAATTTTATTCTCAAAATA  100

seq1  CATTTCTTTTACTTATTTTTGTTAGTTCTCTGAAATTTGTATACAATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTTTACTTATTTTTGTTAGTTCTCTGAAATTTGTATACAATGTA  150

seq1  TTTCAGTCATATTGACCTCATCCCCAATTTCCCTCAGATCCACACTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTCATATTGACCTCATCCCCAATTTCCCTCAGATCCACACTTCCC  200

seq1  TTTGCTATGTGCCCAATTTTGTGGATTTGCACCCATCAACTCTAATTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATGTGCCCAATTTTGTGGATTTGCACCCATCAACTCTAATTTCT  250

seq1  AATGTCCATATATTCATGGGTGTGTGGTCTCTAACTGAATTGTGGTCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCATATATTCATGGGTGTGTGGTCTCTAACTGAATTGTGGTCAAC  300

seq1  CTAGCAGGGGCAATATTCTTGAAGAAATCTGACTCTGCTTCTCCTAATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGGGGCAATATTCTTGAAGAAATCTGACTCTGCTTCTCCTAATGG  350

seq1  CTATCAGTTGCCTCAACTAGGGGTGGGACTTCATGTCTCTCTTCCCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGTTGCCTCAACTAGGGGTGGGACTTCATGTCTCTCTTCCCTCTC  400

seq1  CAGTCTGAGATTTAGGCTGGCTTGTGCTTACATGGGGCTTATGTATACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGAGATTTAGGCTGGCTTGTGCTTACATGGGGCTTATGTATACTG  450

seq1  TGCCAATCACTGTGAATTCATATGTACAGCTGCTCTGTTGCATTCGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATCACTGTGAATTCATATGTACAGCTGCTCTGTTGCATTCGGAAA  500

seq1  ACAGCTTGATATCTCCATGTTCTGTGACTGTGTCTTTTCAGCAGTAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTGATATCTCCATGTTCTGTGACTGTGTCTTTTCAGCAGTAGTGT  550

seq1  GTTATTCTCAAATATATTAATATAGTGCCTGGCTTTGTATAAAAACTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCTCAAATATATTAATATAGTGCCTGGCTTTGTATAAAAACTTCA  600

seq1  AAGAACTAATAAAAACAAGTAAAATAAATGTATTTTAAGAATCATTTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTAATAAAAACAAGTAAAATAAATGTATTTTAAGAATCATTTAGA  650

seq1  AATCAGTTATAAAGGTTATATATGTACGTGAGACCTACAGTAACTGAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTTATAAAGGTTATATATGTACGTGAGACCTACAGTAACTGAACT  700

seq1  GAGCCCATGCTATTTATTGTGAAGGAGTTTTTAATGTACCTTGGTTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCATGCTATTTATTGTGAAGGAGTTTTTAATGTACCTTGGTTTTGT  750

seq1  TTTGTTTTTACTGTATATGTATTTATTTGTTGTGTGTATTTCTATCTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTACTGTATATGTATTTATTTGTTGTGTGTATTTCTATCTCAG  800

seq1  ATTTGATTTCTGTATAGTAAATGTGGTGCTCAGAGGTTCATAGAT-GGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATTTGATTTCTGTATAGTAAATGTGGTGCTCAGAGGTTCATAGATGGGAT  850

seq1  GGAGTAAGAGAAAGATTTAGAAATTCTTAAATGAGAAGAAATTCCAAAGT  899
      ||||||||||||||| |||||||||||||||||||||||||||||| |||
seq2  GGAGTAAGAGAAAGA-TTAGAAATTCTTAAATGAGAAGAAATTCCACAGT  899

seq1  GTA-GATGTAGAGTAACTTGACCATGC-TTCATTGTTGTAGGACACAGGG  947
      ||| ||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  GTAGGATGTAGAGTAACTTGACCATGCTTTCATTGGTGTAGGACACAGGG  949

seq1  TAGTTTTCTTTAGTCTTTAAGGGCTATTGTCATCAGAGCCCTAGGATCAA  997
      |||||||||||| ||||| | | ||||||||||| |||||||||||||||
seq2  TAGTTTTCTTTATTCTTT-ACGACTATTGTCATC-GAGCCCTAGGATCAA  997

seq1  AATGTATTTGCGATAGTTTGAAGAGTTTTTTTGTATGAAGGAAAGAGGAA  1047
       ||||| ||||||||| |||||||   |||||| ||| |||||||||| |
seq2  CATGTA-TTGCGATAG-TTGAAGA--CTTTTTGGATGGAGGAAAGAGGGA  1043

seq1  ATCAGAGACCAGTT-TACTTCCCACAGAGCCTT-CTTCCCTCTA-GCCAG  1094
      |||||||| ||||| ||||  || ||||||||| ||| |||||| |||||
seq2  ATCAGAGATCAGTTGTACT--CCCCAGAGCCTTCCTTGCCTCTAGGCCAG  1091

seq1  AGTCC  1099
       ||||
seq2  -GTCC  1095

seq1: chrX_149854434_149855414
seq2: B6Ng01-197D20.g_64_1048 (reverse)

seq1  AAAGTTTTAAT-AAAGAATATCCA-CTGGGAACATAAGCAC-AATAGGTG  47
      ||||||||||| ||||| |||||| | || ||||||||| | ||||||||
seq2  AAAGTTTTAATAAAAGATTATCCATCGGGCAACATAAGCCCAAATAGGTG  50

seq1  AATT-ATCAGA-GAAAGATAATCATCTTCTTTCCAGGGGCATGGGGTCCT  95
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  AATTCATCAGAGGAAAGATAATCATCTTCTTTCCAGGGGCATGGGGTCCT  100

seq1  TTGGAATCAGTTAAGAGAAGTTATCTGGCCTTGCCTTCAGGCCCAGTTCA  145
       ||||||||||||||||||||||| || |||||||||||||||||| |||
seq2  GTGGAATCAGTTAAGAGAAGTTATATGTCCTTGCCTTCAGGCCCAG-TCA  149

seq1  ACAGATAAGAGG-AGTGGAGCTCACTCTCAGCTCAGTAAATTGTATAATT  194
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  ACAGATAAGAGGAAGTGGAGCTCACTCTCAGCTCAGTAAATTGTATAATA  199

seq1  GCCTTTTCTTTCTGAGACTGCCTGTTGAGGGTGAGGTTCCAGGTTTTTAA  244
       |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCCTTTTCTTTCTGAGACTGCCTGTTGAGGGTGAGGTTCCAGG-TTTTAA  248

seq1  GAGCTAGGGTCAAATTGTGTAAGATATCCTGAGTCACCTGGTCTGGCTCC  294
      |||||||||||||||||||||||||||| |||||||| ||||||||||||
seq2  GAGCTAGGGTCAAATTGTGTAAGATATCGTGAGTCACTTGGTCTGGCTCC  298

seq1  AGCTACTATATTATTGTAAGAGAGGAAGGAATTTTTTTTTTGGTTCATCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTATATTATTGTAAGAGAGGAAGGAATTTTTTTTTTGGTTCATCT  348

seq1  CTTTTTTCTCTTTACAAATAACTATGCATAAAAATGGCTTATTCTTAATG  394
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTTTTTTCTCTTTACAAATAACTATGCATAAAAATGGCTTATTGTTAATG  398

seq1  TTTTGGTTTTAGCTCCTTTTGAAATGGCTGCCACAAATGACTCCATTTTT  444
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTTTTAGCTCCTTTTGAAATGGCTGCCACAAATGACTCCATTTTT  448

seq1  GTCACTGGCTTTTAGAAAGAGTTTTTCTTTTCTTTAATTTATTTAATGTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGGCTTTTAGAAAGAGTTTTTCTTTTCTTTAATTTATTTAATGTT  498

seq1  TTTATTTATTCCAGTTCAGTGTCCCCGTCCCAGTCACCCCCTCCTACGAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTCCAGTTCAGTGTCCCCGTCCCAGTCACCCCCTCCTACGAT  548

seq1  CCCTTTCCCCCTTCTCTGAGTGAATAGGGGCCCTCCTGGGTATCCCCTCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCCCCCTTCTCTGAGTGAATAGGGGCCCTCCTGGGTATCCCCTCA  598

seq1  CCCTGGCACTTCAAGTCTCTTCAAGGCTAGCTGCTTTTTCTTCCACTGAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCACTTCAAGTCTCTTCAAGGCTAGCTGCTTTTTCTTCCACTGAG  648

seq1  GCCAGACAAGGCAGCCCAGCTAGTAGAATATATCCCATTGACAGGGAACA  694
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCCAGACAAGGCAGCCCAGCTAGTAGAATATATCCCATTGCCAGGGAACA  698

seq1  GCTTTTGGGATAGCCCCTGCTCCAGTTGTTGGGATCTGCATGAAGACCAA  744
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCTTTTGGGATAGCCCCTGCTCCAGTTGTTGGGATTTGCATGAAGACCAA  748

seq1  GCGGCACATCTGCTACATATGTGCGGGGAGGCCTAGGTCCAGCCTGTGCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCACATCTGCTACATATGTGCGGGGAGGCCTAGGTCCAGCCTGTGCA  798

seq1  TGCTCTTTGGTTGGTGGTTCAGTCTCTGAGAGCCCAGGGTCCAGGTTAGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTTGGTTGGTGGTTCAGTCTCTGAGAGCCCAGGGTCCAGGTTAGT  848

seq1  TGACTCTGTTGGTCTTCCTGTGGAGTTCCTATACCCTTAGAAATGGTCTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTGTTGGTCTTCCTGTGGAGTTCCTATACCCTTAGAAATGGTCTT  898

seq1  TCTATGTAACCAAAGCTGGCCTCAAATTTAGGGTCCTCCTGCTTCAGCCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTAACCAAAGCTGGCCTCAAATTTAGGGTCCTCCTGCTTCAGCCT  948

seq1  TTGAACTGTGGGAATGTATCATGTCCCGTGTGAATTC  981
      |||||||||||||||||||||||||||||||||||||
seq2  TTGAACTGTGGGAATGTATCATGTCCCGTGTGAATTC  985