BAC Information

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BAC

Clone NameB6Ng01-197F16
ChromosomeX (Build37)
Map Location 89,926,118 - 90,021,291
singlet/doubletdoublet
Overlap genenone
Upstream geneMageb5, LOC673766, LOC633484, LOC674396, EG278087, Mageb1, EG236892, EG236893, Mageb18, EG436259, EG668061, EG546347, LOC629568
Downstream geneLOC100042663, Rp23-438h3.2, Arx, Pola1, EG629581, Pcyt1b, Pdk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197F16.bB6Ng01-197F16.g
ACCGA019241GA019242
length1,1841,009
definitionB6Ng01-197F16.b B6Ng01-197F16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,020,075 - 90,021,291)(89,926,118 - 89,926,960)
sequence
gaattctgtcctagaatatatatgcaaggctgatagagataggcaaatgg
ctatggtgagaagtgagcatttgctttccatattagagaaagatgacaga
tcctaaatgaagtagaagactgattcttgatattcagaatggagacagtt
cttcatcaagcctatattaaattcatttcattaatgttttgtgtgagaag
gcagaaaaaagtaacttttggggggagactgggagactgaaattgcccaa
tgttccagttacttttattatgatgtgaactcacatctcataaaaaaaaa
aaaaaacatgaaaaaagtattttctttatctgcctggcagatgcgtttca
attacagttggtcgggtatgatgacaaatgcctttaatgatctgctgcct
ttcagggttctgcaaagaatgctttttaatgtcacaggtgctagaagaag
gatttttcatagcagttttcctagtatttgagatgtgatttttaaaatta
ttacatttattcttttcctctccctgcctccttccccctctctcttctcc
atgtctacacacacacacacacacacacacacacacacacacacatgaag
gccagagaacaacatgtagaagatagttctttccttttaccgtgtggatc
ctggaatagaactcatgtcttcaggcttaaaaacaatcatctttacagtt
acccctcccagccattctcagcagcccagagatatgatctcatgtgttgt
gttgtggcacatgcatcgaaacatttggggtttcagcctatccacgcagg
tttcttgtccttttttccttgaatcttgtgttctttcttggatttgaata
gacttttatcaggataaaacttgcataatgactttagttctcccaacgtc
taccactctgtgctatagtgtgctaaatgagagccccaaatcactgggta
tagatgattatcatctatacttttagagacttcaattagagactgagttt
tgggactcctccaaaagtgccattctactccgaggatctatgaagaatct
ttgcctcaaacaccttatctgtgtttgcattaggatattaggacagtaga
tgactcagcttattgaaggaaccggactcagatgaaccatctccaaagtc
ttagaacctgaataaacttgagactctacttgaa
gaattcattaacaaagctatcatcattctattgcctagaaaaattaaatt
aaaatatattattattaaaaataggaaatttaataaattctaaatgggcc
atttaatattaaaagaatttaatttctttaagaccgtttcccactacctg
ctattttcaaagccatctttcagcacatacccactttaaatttctaatta
tctgtgagtgattgactttagataattcaggtaaaccggtatttgaagtt
cttggcagcaaggaactgggatcagtattggccataaacatctactcagc
taacttagccattgtcactaagtatgaatagaatgccagctatgagaata
ggcaatgcagaaataaaactccatattgcagagaagattttgacaaggat
cccaggaacacaaaatgtagggacagtctatctagtatgatggtggggaa
actgagtatccttgtgcagaacactgatagatcatcatctcatatagtat
atgaaaaaatcaagccaaaaaggacaataggcttaaatatgacttaaaat
gaagaaaaacctacaagacaaaatcattagggactatgtccattacatgg
acagtggaagacaacaacaggggatatccatgatgagtattcatgcaaaa
ctcctcagcatagtaccagcaaactgaattggacaatatgtaaagaagat
tacaccccatggctaaaatgttatacctggaatacaagtattgttaacca
cattataaatagtgctacccatgacattagccaaatggaaaataaaaatt
actcaatcatctaaataatgaacaaaaattgagaaaggttcaacatcgtg
tcacagtaatacaataaacaaaaaagaagaaagttatagctacataataa
atgataaggttgtctgcttctgccactgctattcacatagcattgggaaa
tcctagccccagttatgaggcacgtaaaaaaaaaaaaaaaagccctgcaa
atcatttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_90020075_90021291
seq2: B6Ng01-197F16.b_50_1233 (reverse)

seq1  TTCAAGTAGAG-CTCAAGATTTAATTTTAGTGTTTATAAAGATTTGGGGA  49
      ||||||||||| |||||| ||||  || |  | || |||   ||||| ||
seq2  TTCAAGTAGAGTCTCAAG-TTTA--TTCA--GGTTCTAAGACTTTGGAGA  45

seq1  GGATGGGGTTCTCATCCTGAGCTCCGTCTCCTTTTAAAATAAGGCTGAGG  99
       | |       |||| ||||| ||||  |||||    ||||| ||||| |
seq2  TGGT-------TCAT-CTGAG-TCCGGTTCCTT---CAATAA-GCTGA-G  81

seq1  TCATCCTAACTGTCCTTAATATCCTTAATGCAAACACAGAATAAGGGGTT  149
      |||||   ||||||| |||||||| |||||||||||||| ||||||    
seq2  TCATC--TACTGTCC-TAATATCC-TAATGCAAACACAG-ATAAGG----  122

seq1  TGTTTGAAGCAAAGATTCTTTCATAGGTCCCTCGGAGTAGAAATGCCACT  199
      ||||||| |||||||||| ||||||| | ||||||||||| |||| ||||
seq2  TGTTTGAGGCAAAGATTC-TTCATAGAT-CCTCGGAGTAG-AATGGCACT  169

seq1  TTTGGAGGAGTCCCAAAACTCAGTTCCTCCTAATTGGAGTCTCTAAAAGT  249
      ||||||||||||||||||||||||  || ||||||| |||||||||||||
seq2  TTTGGAGGAGTCCCAAAACTCAGT--CT-CTAATTGAAGTCTCTAAAAGT  216

seq1  ATAGATGATAATCATCTATACCCAGTGATTTGGGGCTCTCATTTAGCACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGATAATCATCTATACCCAGTGATTTGGGGCTCTCATTTAGCACA  266

seq1  CTATAGCACAGAGTGGTAGACGTTGGGAGAACTAAAGTCATTATGCAAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCACAGAGTGGTAGACGTTGGGAGAACTAAAGTCATTATGCAAGT  316

seq1  TTTATCCTGATAAAAGTCTATTCAAATCCAAGAAAGAACACAAGATTCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCTGATAAAAGTCTATTCAAATCCAAGAAAGAACACAAGATTCAA  366

seq1  GGAAAAAAGGACAAGAAACCTGCGTGGATAGGCTGAAACCCCAAATGTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAGGACAAGAAACCTGCGTGGATAGGCTGAAACCCCAAATGTTT  416

seq1  CGATGCATGTGCCACAACACAACACATGAGATCATATCTCTGGGCTGCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGCATGTGCCACAACACAACACATGAGATCATATCTCTGGGCTGCTG  466

seq1  AGAATGGCTGGGAGGGGTAACTGTAAAGATGATTGTTTTTAAGCCTGAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGCTGGGAGGGGTAACTGTAAAGATGATTGTTTTTAAGCCTGAAG  516

seq1  ACATGAGTTCTATTCCAGGATCCACACGGTAAAAGGAAAGAACTATCTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGTTCTATTCCAGGATCCACACGGTAAAAGGAAAGAACTATCTTC  566

seq1  TACATGTTGTTCTCTGGCCTTCATGTGTGTGTGTGTGTGTGTGTGTGTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTTGTTCTCTGGCCTTCATGTGTGTGTGTGTGTGTGTGTGTGTGT  616

seq1  GTGTGTGTGTGTAGACATGGAGAAGAGAGAGGGGGAAGGAGGCAGGGAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTAGACATGGAGAAGAGAGAGGGGGAAGGAGGCAGGGAGA  666

seq1  GGAAAAGAATAAATGTAATAATTTTAAAAATCACATCTCAAATACTAGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGAATAAATGTAATAATTTTAAAAATCACATCTCAAATACTAGGA  716

seq1  AAACTGCTATGAAAAATCCTTCTTCTAGCACCTGTGACATTAAAAAGCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCTATGAAAAATCCTTCTTCTAGCACCTGTGACATTAAAAAGCAT  766

seq1  TCTTTGCAGAACCCTGAAAGGCAGCAGATCATTAAAGGCATTTGTCATCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCAGAACCCTGAAAGGCAGCAGATCATTAAAGGCATTTGTCATCA  816

seq1  TACCCGACCAACTGTAATTGAAACGCATCTGCCAGGCAGATAAAGAAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCGACCAACTGTAATTGAAACGCATCTGCCAGGCAGATAAAGAAAAT  866

seq1  ACTTTTTTCATGTTTTTTTTTTTTTTTATGAGATGTGAGTTCACATCATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTCATGTTTTTTTTTTTTTTTATGAGATGTGAGTTCACATCATA  916

seq1  ATAAAAGTAACTGGAACATTGGGCAATTTCAGTCTCCCAGTCTCCCCCCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGTAACTGGAACATTGGGCAATTTCAGTCTCCCAGTCTCCCCCCA  966

seq1  AAAGTTACTTTTTTCTGCCTTCTCACACAAAACATTAATGAAATGAATTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTACTTTTTTCTGCCTTCTCACACAAAACATTAATGAAATGAATTT  1016

seq1  AATATAGGCTTGATGAAGAACTGTCTCCATTCTGAATATCAAGAATCAGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGGCTTGATGAAGAACTGTCTCCATTCTGAATATCAAGAATCAGT  1066

seq1  CTTCTACTTCATTTAGGATCTGTCATCTTTCTCTAATATGGAAAGCAAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACTTCATTTAGGATCTGTCATCTTTCTCTAATATGGAAAGCAAAT  1116

seq1  GCTCACTTCTCACCATAGCCATTTGCCTATCTCTATCAGCCTTGCATATA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTTCTCACCATAGCCATTTGCCTATCTCTATCAGCCTTGCATATA  1166

seq1  TATTCTAGGACAGAATTC  1217
      ||||||||||||||||||
seq2  TATTCTAGGACAGAATTC  1184

seq1: chrX_89926118_89926960
seq2: B6Ng01-197F16.g_62_905

seq1  GAATTCATTAACAAAGCTATCATCATTCTATTGCCTAGAAAAATTAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAACAAAGCTATCATCATTCTATTGCCTAGAAAAATTAAATT  50

seq1  AAAATATATTATTATTAAAAATAGGAAATTTAATAAATTCTAAATGGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATTATTATTAAAAATAGGAAATTTAATAAATTCTAAATGGGCC  100

seq1  ATTTAATATTAAAAGAATTTAATTTCTTTAAGACCGTTTCCCACTACCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATATTAAAAGAATTTAATTTCTTTAAGACCGTTTCCCACTACCTG  150

seq1  CTATTTTCAAAGCCATCTTTCAGCACATACCCACTTTAAATTTCTAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCAAAGCCATCTTTCAGCACATACCCACTTTAAATTTCTAATTA  200

seq1  TCTGTGAGTGATTGACTTTAGATAATTCAGGTAAACCGGTATTTGAAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAGTGATTGACTTTAGATAATTCAGGTAAACCGGTATTTGAAGTT  250

seq1  CTTGGCAGCAAGGAACTGGGATCAGTATTGGCCATAAACATCTACTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCAGCAAGGAACTGGGATCAGTATTGGCCATAAACATCTACTCAGC  300

seq1  TAACTTAGCCATTGTCACTAAGTATGAATAGAATGCCAGCTATGAGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTAGCCATTGTCACTAAGTATGAATAGAATGCCAGCTATGAGAATA  350

seq1  GGCAATGCAGAAATAAAACTCCATATTGCAGAGAAGATTTTGACAAGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGCAGAAATAAAACTCCATATTGCAGAGAAGATTTTGACAAGGAT  400

seq1  CCCAGGAACACAAAATGTAGGGACAGTCTATCTAGTATGATGGTGGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAACACAAAATGTAGGGACAGTCTATCTAGTATGATGGTGGGGAA  450

seq1  ACTGAGTATCCTTGTGCAGAACACTGATAGATCATCATCTCATATAGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTATCCTTGTGCAGAACACTGATAGATCATCATCTCATATAGTAT  500

seq1  ATGAAAAAATCAAGCCAAAAAGGACAATAGGCTTAAATATGACTTAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAATCAAGCCAAAAAGGACAATAGGCTTAAATATGACTTAAAAT  550

seq1  GAAGAAAAACCTACAAGACAAAATCATTAGGGACTATGTCCATTACATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAACCTACAAGACAAAATCATTAGGGACTATGTCCATTACATGG  600

seq1  ACAGTGGAAGACAACAACAGGGGATATCCATGATGAGTATTCATGCAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGAAGACAACAACAGGGGATATCCATGATGAGTATTCATGCAAAA  650

seq1  CTCCTCAGCATAGTACCAGCAAACTGAATTGGACAATATGTAAAGAAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGCATAGTACCAGCAAACTGAATTGGACAATATGTAAAGAAGAT  700

seq1  TACACCCCATGGCTAAAATGTTATACCTGGAATACAAGTATTGTTAACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCCCATGGCTAAAATGTTATACCTGGAATACAAGTATTGTTAACCA  750

seq1  CATTATAAATAGTGCTACCCATGACATTAGCCAAATGGAAAATAAAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATAAATAGTGCTACCCATGACATTAGCCAAATGGAAAATAAAAATT  800

seq1  ACTCAATCATCTAAATAATGAACAAAAATTGAG-AAGGTTCAAC  843
      ||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACTCAATCATCTAAATAATGAACAAAAATTGAGAAAGGTTCAAC  844