BAC Information

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BAC

Clone NameB6Ng01-197K19
ChromosomeX (Build37)
Map Location 110,660,291 - 110,803,858
singlet/doubletdoublet
Overlap geneDach2
Upstream gene2010106E10Rik, Zfp711, Pof1b, LOC623412, EG623428, LOC100039112, Chm, EG664918
Downstream geneLOC237016, EG664945, EG634881, LOC100039201, Klhl4, Gm1866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197K19.bB6Ng01-197K19.g
ACCGA019476GA019477
length8591,080
definitionB6Ng01-197K19.b B6Ng01-197K19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,803,007 - 110,803,858)(110,660,291 - 110,661,377)
sequence
gaattcctacctgaggaataccgaatggctgagaagcacctgaaaacatg
ttcagcatccttaatcatcagggaaatgcaaatcaaagcaaccctgagat
tccacctcagaccagtcagaatggctaagtcaaaaatttaggtgacagca
gatgctggcgaggatgtggagaaagagaaaaactcctccattgttggtgg
gattgcaagcttgtacaaccactctggaaatcagtctggcggttcctcag
aaaattggacatagtactaccggaggatcccgcaatacctctcttgggca
tatatccagaagatgttccaactggtaaggaggacacatgctccactatg
ttcatagcagccttatttatttatttatttatttatttatttatttattt
atttatttatttatttatttttcccccttgcgcctctgcaatgcacgctg
ggccttgctgaggtgctcttttttttttttttttttttttttttttttta
tggttcaagcgtaatttttttttctttccattttttattaggtatttagc
tcatttacatttccaatgctataccaaaagtcccccatacccacccaccc
cactcccctacccgcccactccccctttttggccctggggttcccctgta
ctggggcatataaagtttgcaagtccaatgggcctctctttccagagatg
gccgactaggccatcttttgataaatatgcagctagaaaaaaagaacccg
ggggggacggggtttattcaaaatgttgttccccctaagagggggggaaa
tcccttttagcccccgggggaattttctctaccccccccaggggggagcc
ctgtgatcc

gaattcaggttgctgacagaatttgtttttcttcataaacacggaaaggt
caggtagagtttaactaccattggtgtctttgatacattgtaataaatgt
caaccccaaatattaattcatgatgcaattaaaattcttagtgttccagc
aagaaatatcctgacttagttaaacatgcacataggtaatcgttaacagt
gctttaataggcaggcggacatcttcagagacattgtcagtttttatttt
gaacatttactataagataaaacattacacattcatgacactgtgataaa
gttttttaaatatcaataattctaaaaagtgaagactgagtcttgcatta
ctacagacagaccccttttaaggaatttagttgaagtgttctcacgtgct
gctagtaaatatacccttaactgtcagtaagtaaatctttggctgttttt
ttaagtctgtcacagaatgtagccttttttttttttaaggaatagtacaa
atagttgactgacaaagatgatctaaccttatttatcatgaaattaatta
ctgctcataaaatttatattaaataatgtaaaggttcaaggcatcataga
tttatagtgttttctttatttcaaacaatgaaaccacgtgctctcacatt
actctttgattcataaatggatagttgtatgaaataaaaaagtttgaaag
ggaaatttcataatctcagtaggtaaagaatcagcttcaatgaacattac
actggagacagatatggcacagaatgtcatatgttgctcctagaagactt
attgaactttcttggagagctgccaacttacaaagtttataaagtgatag
tgactctagttcaatcacagaagtatgaagtgctgttattattcatgtga
tttaaaaaaaaaacttacacattaagttctcctaaacagttttatcaaat
gatgaaaaaaatctgtattaggataaattacttaaaaagatagacctgag
taaatcaggacactgaaataatttaaacgtacataatgttagatgtataa
gtggcatattctataaacagaatctcatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_110803007_110803858
seq2: B6Ng01-197K19.b_41_899 (reverse)

seq1  GGATCACAGGGCT-CCCAATGGAGGAGCTAGAG-AAAGTACCCAAGGAGC  48
      ||||||||||||| |||  ||| || | ||||| ||| | |||  || ||
seq2  GGATCACAGGGCTCCCCCCTGGGGGGGGTAGAGAAAATTCCCCCGGGGGC  50

seq1  T-AAAGGGATCTGCAACCCT-ATAGGTGGATCAACATTATGAACTAA-CC  95
      | |||||||| | |  ||||  |||| ||| ||||||| ||||  || ||
seq2  TAAAAGGGATTTCCCCCCCTCTTAGGGGGAACAACATTTTGAATAAACCC  100

seq1  AGT-ACCCCGGAGCTC-TTGACTCTAGCTGCATATGTATCAAAAGATGGC  143
       ||  |||| | | || ||   ||||||||||||| ||||||||||||||
seq2  CGTCCCCCCCGGGTTCTTTTTTTCTAGCTGCATATTTATCAAAAGATGGC  150

seq1  CTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACACAAACTTTAT  193
      ||||||||||||| |||||||||||||||||||||||   ||||||||||
seq2  CTAGTCGGCCATCTCTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTAT  200

seq1  ATGCCCCAGAACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGCGGGT  243
      ||||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  ATGCCCCAGTACAGGGGAACCCCAGGGCCAAAAAGGGGGAGTGGGCGGGT  250

seq1  AGGGGAGTGGGGTGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGTGGGGTGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAA  300

seq1  TGTAAATGAGCTAAATACCTAATAAAAAATGGAAAGAAAAAAAAATTACG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGAGCTAAATACCTAATAAAAAATGGAAAGAAAAAAAAATTACG  350

seq1  CTTGAACCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGCACCTC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGCACCTC  400

seq1  AGCAAGGCCCAGCGTGCATTGCAGAGGCGCAAGGGGGAAAAATAAATAAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGCCCAGCGTGCATTGCAGAGGCGCAAGGGGGAAAAATAAATAAA  450

seq1  TAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAGGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAGGC  500

seq1  TGCTATGAACATAGTGGAGCATGTGTCCTCCTTACCAGTTGGAACATCTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGAACATAGTGGAGCATGTGTCCTCCTTACCAGTTGGAACATCTT  550

seq1  CTGGATATATGCCCAAGAGAGGTATTGCGGGATCCTCCGGTAGTACTATG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATATATGCCCAAGAGAGGTATTGCGGGATCCTCCGGTAGTACTATG  600

seq1  TCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTACAAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTACAAG  650

seq1  CTTGCAATCCCACCAACAATGGAGGAGTTTTTCTCTTTCTCCACATCCTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAATCCCACCAACAATGGAGGAGTTTTTCTCTTTCTCCACATCCTC  700

seq1  GCCAGCATCTGCTGTCACCTAAATTTTTGACTTAGCCATTCTGACTGGTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCATCTGCTGTCACCTAAATTTTTGACTTAGCCATTCTGACTGGTC  750

seq1  TGAGGTGGAATCTCAGGGTTGCTTTGATTTGCATTTCCCTGATGATTAAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGGAATCTCAGGGTTGCTTTGATTTGCATTTCCCTGATGATTAAG  800

seq1  GATGCTGAACATGTTTTCAGGTGCTTCTCAGCCATTCGGTATTCCTCAGG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGAACATGTTTTCAGGTGCTTCTCAGCCATTCGGTATTCCTCAGG  850

seq1  TAGGAATTC  852
      |||||||||
seq2  TAGGAATTC  859


seq1: chrX_110660291_110661377
seq2: B6Ng01-197K19.g_67_1146

seq1  GAATTCAGGTTGCTGACAGAATTTGTTTTTCTTCATAAACACGGAAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTGCTGACAGAATTTGTTTTTCTTCATAAACACGGAAAGGT  50

seq1  CAGGTAGAGTTTAACTACCATTGGTGTCTTTGATACATTGTAATAAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGAGTTTAACTACCATTGGTGTCTTTGATACATTGTAATAAATGT  100

seq1  CAACCCCAAATATTAATTCATGATGCAATTAAAATTCTTAGTGTTCCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCAAATATTAATTCATGATGCAATTAAAATTCTTAGTGTTCCAGC  150

seq1  AAGAAATATCCTGACTTAGTTAAACATGCACATAGGTAATCGTTAACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATATCCTGACTTAGTTAAACATGCACATAGGTAATCGTTAACAGT  200

seq1  GCTTTAATAGGCAGGCGGACATCTTCAGAGACATTGTCAGTTTTTATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAATAGGCAGGCGGACATCTTCAGAGACATTGTCAGTTTTTATTTT  250

seq1  GAACATTTACTATAAGATAAAACATTACACATTCATGACACTGTGATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTACTATAAGATAAAACATTACACATTCATGACACTGTGATAAA  300

seq1  GTTTTTTAAATATCAATAATTCTAAAAAGTGAAGACTGAGTCTTGCATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTAAATATCAATAATTCTAAAAAGTGAAGACTGAGTCTTGCATTA  350

seq1  CTACAGACAGACCCCTTTTAAGGAATTTAGTTGAAGTGTTCTCACGTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGACAGACCCCTTTTAAGGAATTTAGTTGAAGTGTTCTCACGTGCT  400

seq1  GCTAGTAAATATACCCTTAACTGTCAGTAAGTAAATCTTTGGCTGTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTAAATATACCCTTAACTGTCAGTAAGTAAATCTTTGGCTGTTTTT  450

seq1  TTAAGTCTGTCACAGAATGTAGCCTTTTTTTTTTTTAAGGAATAGTACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCTGTCACAGAATGTAGCCTTTTTTTTTTTTAAGGAATAGTACAA  500

seq1  ATAGTTGACTGACAAAGATGATCTAACCTTATTTATCATGAAATTAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTGACTGACAAAGATGATCTAACCTTATTTATCATGAAATTAATTA  550

seq1  CTGCTCATAAAATTTATATTAAATAATGTAAAGGTTCAAGGCATCATAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCATAAAATTTATATTAAATAATGTAAAGGTTCAAGGCATCATAGA  600

seq1  TTTATAGTGTTTTCTTTATTTCAAACAATGAAACCACGTGCTCTCACATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGTGTTTTCTTTATTTCAAACAATGAAACCACGTGCTCTCACATT  650

seq1  ACTCTTTGATTCATAAATGGATAGTTGTATGAAATAAAAAAGTTTGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTGATTCATAAATGGATAGTTGTATGAAATAAAAAAGTTTGAAAG  700

seq1  GGAAATTTCATAATCTCAGTAGGTAAAGAATCAGCTTCAATGAACATTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTTCATAATCTCAGTAGGTAAAGAATCAGCTTCAATGAACATTAC  750

seq1  ACTGGAGACAGATATGGCACAGAATGTCATATGTTGCTCCTAGAAGACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGACAGATATGGCACAGAATGTCATATGTTGCTCCTAGAAGACTT  800

seq1  ATTGAACTTTCTTGGAGAGCTGCCAACTTACAAAGTTTATAAGGTGATAG  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATTGAACTTTCTTGGAGAGCTGCCAACTTACAAAGTTTATAAAGTGATAG  850

seq1  TGACTCTAGTTCAATCACAGAAGTATGAAGTGCTGTTATTATTCATGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTAGTTCAATCACAGAAGTATGAAGTGCTGTTATTATTCATGTGA  900

seq1  TTT-AAAAAAAAACTTACACATTAAGTTCTCCTAAACAGTTTTATCAAAT  949
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAAAAAACTTACACATTAAGTTCTCCTAAACAGTTTTATCAAAT  950

seq1  GATGAAAAAAAAATCTGTATTAGGATAAATTACTTAAAAAGATAGACCTG  999
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  GATG--AAAAAAATCTGTATTAGGATAAATTACTTAAAAAGATAGACCTG  998

seq1  AGTAAAATCAGGACACTGAAATAATTTAAACGTACATAATGTTTAGATGT  1049
      ||| ||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  AGT-AAATCAGGACACTGAAATAATTTAAACGTACATAATG-TTAGATG-  1045

seq1  TATAAGTGGCATTAATTCTATAAAACAGAATCTCATAG  1087
      ||||||||||||  ||||||| ||||||||||||||||
seq2  TATAAGTGGCAT--ATTCTAT-AAACAGAATCTCATAG  1080


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