BAC Information

Click to search

BAC

Clone NameB6Ng01-197M05
ChromosomeX (Build37)
Map Location 17,350,491 - 17,351,549
singlet/doubletsinglet
Overlap genenone
Upstream geneMaob, Ndph, LOC100043063, Efhc2, Fundc1, EG278181, EG668994
Downstream geneEG436196, EG331391, Dusp21, LOC100043951, Utx, LOC100043952, 4930578C19Rik, LOC100043098
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197M05.bB6Ng01-197M05.g
ACCGA019544GA019545
length8441,139
definitionB6Ng01-197M05.b B6Ng01-197M05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattgtttttaattgctgagtagtacttcattgcataaatttacc
acattttctgtatccattcctctgttgagggacatctgagtttttttcca
gcttctggctattataaataaggctgctatgaacatagtggagcatgtgt
ccttattacatgttggaacatctgggtatatgcccaggacaggtattgct
ggatcttccggtagtactatgtccaattttctgaggaactgccagaccga
tttccagagtggttgtcccaacttccaatcccagcaacaatggaggaatg
tccctctttctccacatcctcaccagcatctactgtcacctgaatttttt
atcttagccattgttattggtgtgaggtgaaatcttggggttgttttgat
ttgcatttccttgatgtctaaggatgttgaacattttttcaggtgcttct
cagccatttggtattcctcagttgagaattctttgtttagctctgtacct
cactttttaatggggttatttgaatttctggagtccatcttcttgtgttc
tttatatatgttggatattactcccatatctgatttaggattggtaaaga
tcctttcccaatctgttggtggcctttttgtcttattgacagcgtctttt
gccttacagaaactttgcaattttatgtggtcccatttgtcgattctcga
tcttacagcacaaatcatttgctgttctattcaagaatttttcccctgtg
cctatgtcttcaaggcttttccccactttctcctctataagtttcagtgt
ctctggttttatgttgagttccttgattcacttagacttgatct

gaattctacatctagattggcaggcagcagaaagagagacactgggggtg
acttaaatgtttgaaaccccaagccccacccccagtaatgcacttcctcc
aacagggccacagctattccaacaagcccacacctcctaatagtgtcact
ccctggtgactaagcattcaaatatatgaacccatgggggccattcctac
caccacattatgtttctagaaaattgccagatgtgacccaacaatgactt
ctcttgagatgatactttgtgggactttgtaatacttttgtatccccagt
gggtgttgtgttgttagttttcaaaacactcttagtatgtgattgttgtg
ttttaagatttccatggatctagggagattaaggtgttatgtggcaagtt
aaagtgctgtatgtctctgttcttattgatatgcagatgcttatcttaaa
tgatattgcttagatttttgcaagcctttggttgcttttcagaattctga
aaattttatttttaataaattcctttggaaggaacagactttttgtggtt
ccttacctcaccatccctcctaagtgatagttcaaatctgctttcatgtt
gaactgtctataagtgtaacctgccaaatgtttgatttttatggttataa
aatatatttgaactcatatatgtatttctgtaccaaagaaataagatgaa
aataattttaacatgtatatttaggagatccagaagtggaggggagataa
gtttatatacattttatattcatttatgtacatttatgtaattcagaaat
atgagttatagttttcagcaatagagaaaagcaacccagatttactttct
atactttacaaaacttaaccatagacccaaactccaaagttcatgaacat
tttcctagagatagatctaatttactatattagatttcctattattgaca
taacaaattaccacaaatccacttgcttaaataactccatgtatttctcc
ttaacaggttctacacatccaaatctaagtagttctcaggagatttttct
gccttctgggcctcatgaagttggattccaagctgcaatttactctggga
agattctgggaagaagatctctctttcagcctgaaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_17350491_17351549
seq2: B6Ng01-197M05.g_134_1207

seq1  ACCCCAAGCCCCACCCCCAGTAATGCACTTCCTCCAACAGGGCCACAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAGCCCCACCCCCAGTAATGCACTTCCTCCAACAGGGCCACAGCT  50

seq1  ATTCCAACAAGCCCACACCTCCTAATAGTGTCACTCCCTGGTGACTAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAACAAGCCCACACCTCCTAATAGTGTCACTCCCTGGTGACTAAGC  100

seq1  ATTCAAATATATGAACCCATGGGGGCCATTCCTACCACCACATTATGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATATATGAACCCATGGGGGCCATTCCTACCACCACATTATGTTT  150

seq1  CTAGAAAATTGCCAGATGTGACCCAACAATGACTTCTCTTGAGATGATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAATTGCCAGATGTGACCCAACAATGACTTCTCTTGAGATGATAC  200

seq1  TTTGTGGGACTTTGTAATACTTTTGTATCCCCAGTGGGTGTTGTGTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGGACTTTGTAATACTTTTGTATCCCCAGTGGGTGTTGTGTTGTT  250

seq1  AGTTTTCAAAACACTCTTAGTATGTGATTGTTGTGTTTTAAGATTTCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCAAAACACTCTTAGTATGTGATTGTTGTGTTTTAAGATTTCCAT  300

seq1  GGATCTAGGGAGATTAAGGTGTTATGTGGCAAGTTAAAGTGCTGTATGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTAGGGAGATTAAGGTGTTATGTGGCAAGTTAAAGTGCTGTATGTC  350

seq1  TCTGTTCTTATTGATATGCAGATGCTTATCTTAAATGATATTGCTTAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTTATTGATATGCAGATGCTTATCTTAAATGATATTGCTTAGAT  400

seq1  TTTTGCAAGCCTTTGGTTGCTTTTCAGAATTCTGAAAATTTTATTTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAAGCCTTTGGTTGCTTTTCAGAATTCTGAAAATTTTATTTTTAA  450

seq1  TAAATTCCTTTGGAAGGAACAGACTTTTTGTGGTTCCTTACCTCACCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCCTTTGGAAGGAACAGACTTTTTGTGGTTCCTTACCTCACCATC  500

seq1  CCTCCTAAGTGATAGTTCAAATCTGCTTTCATGTTGAACTGTCTATAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTAAGTGATAGTTCAAATCTGCTTTCATGTTGAACTGTCTATAAGT  550

seq1  GTAACCTGCCAAATGTTTGATTTTTATGGTTATAAAATATATTTGAACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCTGCCAAATGTTTGATTTTTATGGTTATAAAATATATTTGAACTC  600

seq1  ATATATGTATTTCTGTACCAAAGAAATAAGATGAAAATAATTTTAACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTATTTCTGTACCAAAGAAATAAGATGAAAATAATTTTAACATG  650

seq1  TATATTTAGGAGATCCAGAAGTGGAGGGGAGATAAGTTTATATACATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTAGGAGATCCAGAAGTGGAGGGGAGATAAGTTTATATACATTTT  700

seq1  ATATTCATTTATGTACATTTATGTAATTCAGAAATATGAGTTATAGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATTTATGTACATTTATGTAATTCAGAAATATGAGTTATAGTTTT  750

seq1  CAGCAATAGAGAAAAGCAACCCAGATTTAC-TTCTATACTTTACAAAACT  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAGCAATAGAGAAAAGCAACCCAGATTTACTTTCTATACTTTACAAAACT  800

seq1  TAACAATAGACCCAAACTCCAAAGTTCATGAACATTTTCCTAGAGATAGA  849
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATAGACCCAAACTCCAAAGTTCATGAACATTTTCCTAGAGATAGA  850

seq1  TCTAATTTACTATATTAGATTT-CTATTATTGACATAACAAATTACCACA  898
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCTAATTTACTATATTAGATTTCCTATTATTGACATAACAAATTACCACA  900

seq1  AATCCACTGGCTTAAATAACTCCATGTA-TTCTC--TTACA-GTTCTACA  944
      |||||||| ||||||||||||||||||| |||||  | ||| ||||||||
seq2  AATCCACTTGCTTAAATAACTCCATGTATTTCTCCTTAACAGGTTCTACA  950

seq1  CATCCAAAATCTAAGTAG-TCTCCAGAGTATTTTCTGC--TCTGGGCCTC  991
      ||||| |||||||||||| ||||  |||  ||||||||  ||||||||||
seq2  CATCC-AAATCTAAGTAGTTCTCAGGAGATTTTTCTGCCTTCTGGGCCTC  999

seq1  ATGAAGTTGTATACCAAGCTGCA--TTACTCTGG--AGATTCTGGGA--G  1035
      ||||||||| || ||||||||||  |||||||||  |||||||||||   
seq2  ATGAAGTTGGATTCCAAGCTGCAATTTACTCTGGGAAGATTCTGGGAAGA  1049

seq1  AGATCTCTCTTTCAG-CTGAAATTA  1059
      ||||||||||||||| |||||| ||
seq2  AGATCTCTCTTTCAGCCTGAAAATA  1074


| Home | SequenceCutter | Blast | Download |