BAC Information

Click to search

BAC

Clone NameB6Ng01-198A19
ChromosomeX (Build37)
Map Location 17,111,138 - 17,251,873
singlet/doubletdoublet
Overlap geneFundc1, EG278181, EG668994
Upstream geneLOC668993, Maoa, Maob, Ndph, LOC100043063, Efhc2
Downstream geneEG436196, EG331391, Dusp21, LOC100043951, Utx, LOC100043952, 4930578C19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198A19.bB6Ng01-198A19.g
ACCGA019749GA019750
length7121,039
definitionB6Ng01-198A19.b B6Ng01-198A19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,251,162 - 17,251,873)(17,111,138 - 17,112,153)
sequence
gaattcactggagttttatgccttcaacttgaaagaaactctggatgatg
agaaacctcaaggcaagatcaatgatgaggacaaacagaagattcttgac
aaatgcaatgaaatcatcaactggctggataagaaccagactgcagagaa
ggaagaatttgagcatcagcagaaagaactggagaaagtcttcaatccta
acattactaagctataccagagtgctggtggcatgcctaaaggaatgcct
ggtggcctccctggtagagcttccctatccagtggtgcttcttcaggccc
caccattggagaggtagattaagtcagtccaagaagagggtgtagcattg
ttccacaggggcccaaaacaagtaacatggaatgaaaaaaaaaactattt
acactgtcaacaggacaaaatggcaaccaacagatccttaccaatcctac
atctgatagagggctattatacaatatatacaaagaactcaagaagttag
gctccacagaactaaataactctaccaaaaaatggagaacagctcttgat
ctcttgccttcctgctcttggtctgttctcttatccatttccctctctcc
ccattcctctcccccttccctctccacattctcatggctggcctctaatt
ctcttcccttctcttctcttctcttcccttcccttccctctccctctccc
tctccctctccc

gaattctttgtttagctctgagccccatcttttaagggggttatttgatt
ttctggagtccaccctcttgagttctttatatatattggatattagtccc
ctagtttcccttagaatttatctgttgagtcatgtaattatttgaagaaa
tcatataatgttgaaaatcttgtatttgaaggttgctgatttcatcctgt
ggtgtggtaacacatttaagaattaacataataaagtgttggtttttttt
aaaccacaacactggattgagaatgaggttctgtagtaaaacacttaagt
atcatgagtgagcccccaggtttgatctccagcagcactgacaacataac
aacagcaacaaatccttagtgttagaaaacaaaggtgccattagcagacc
aaaacattttgtaatttggaatttgaaagtaggtgggataagttggaaga
gaaatagtaggccagattcaaaactgctgtttagatgaatagactgaaga
tacatattggacaccatgttggatagaattaatatcaatatactacatac
ttgaaaattgcacataaagtagattctaagtattctcaccacaaaatggt
atatgaggcaatgcttatgttaattagttcaatttagctgctctacaatg
aataacatatactaaaacagcattgtgttatgtcgtaaatatatataagc
aattgtgggaaaaaatgaaggtcttactatttagctctggcaggatcagg
aaaacccagaacccagagatcttgcccacctctgtctcccaaggactaga
attaaaggcatgccttcctatgtcagtctctaattttatttttttgtttt
gtttgttatgtcttgcctatgtgctcagggatggccttagcacttcataa
tggttgactatgaatggccctttgaagttttttaccttttactatcttaa
ccctctcctaaatgggtgggaattgtgcccacctagtaattttgtttttt
cctttttcccagacagagtcttgtctcaggtaacctgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_17251162_17251873
seq2: B6Ng01-198A19.b_43_754 (reverse)

seq1  GGGAGAGGGAGAGGGAGAGGGAGAGGGAAGGGAAGGGAAGAGAAGAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGGGAGAGGGAGAGGGAGAGGGAAGGGAAGGGAAGAGAAGAGAAG  50

seq1  AGAAGGGAAGAGAATTAGAGGCCAGCCATGAGAATGTGGAGAGGGAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGAAGAGAATTAGAGGCCAGCCATGAGAATGTGGAGAGGGAAGGG  100

seq1  GGAGAGGAATGGGGAGAGAGGGAAATGGATAAGAGAACAGACCAAGAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAATGGGGAGAGAGGGAAATGGATAAGAGAACAGACCAAGAGCA  150

seq1  GGAAGGCAAGAGATCAAGAGCTGTTCTCCATTTTTTGGTAGAGTTATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCAAGAGATCAAGAGCTGTTCTCCATTTTTTGGTAGAGTTATTTA  200

seq1  GTTCTGTGGAGCCTAACTTCTTGAGTTCTTTGTATATATTGTATAATAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTGGAGCCTAACTTCTTGAGTTCTTTGTATATATTGTATAATAGC  250

seq1  CCTCTATCAGATGTAGGATTGGTAAGGATCTGTTGGTTGCCATTTTGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATCAGATGTAGGATTGGTAAGGATCTGTTGGTTGCCATTTTGTCC  300

seq1  TGTTGACAGTGTAAATAGTTTTTTTTTTCATTCCATGTTACTTGTTTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACAGTGTAAATAGTTTTTTTTTTCATTCCATGTTACTTGTTTTGG  350

seq1  GCCCCTGTGGAACAATGCTACACCCTCTTCTTGGACTGACTTAATCTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGTGGAACAATGCTACACCCTCTTCTTGGACTGACTTAATCTACC  400

seq1  TCTCCAATGGTGGGGCCTGAAGAAGCACCACTGGATAGGGAAGCTCTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAATGGTGGGGCCTGAAGAAGCACCACTGGATAGGGAAGCTCTACC  450

seq1  AGGGAGGCCACCAGGCATTCCTTTAGGCATGCCACCAGCACTCTGGTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGCCACCAGGCATTCCTTTAGGCATGCCACCAGCACTCTGGTATA  500

seq1  GCTTAGTAATGTTAGGATTGAAGACTTTCTCCAGTTCTTTCTGCTGATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTAATGTTAGGATTGAAGACTTTCTCCAGTTCTTTCTGCTGATGC  550

seq1  TCAAATTCTTCCTTCTCTGCAGTCTGGTTCTTATCCAGCCAGTTGATGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTCTTCCTTCTCTGCAGTCTGGTTCTTATCCAGCCAGTTGATGAT  600

seq1  TTCATTGCATTTGTCAAGAATCTTCTGTTTGTCCTCATCATTGATCTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGCATTTGTCAAGAATCTTCTGTTTGTCCTCATCATTGATCTTGC  650

seq1  CTTGAGGTTTCTCATCATCCAGAGTTTCTTTCAAGTTGAAGGCATAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGTTTCTCATCATCCAGAGTTTCTTTCAAGTTGAAGGCATAAAAC  700

seq1  TCCAGTGAATTC  712
      ||||||||||||
seq2  TCCAGTGAATTC  712


seq1: chrX_17111138_17112153
seq2: B6Ng01-198A19.g_67_1105

seq1  GAATTCTTTGTTTAGCTCTGAGCCCCATCTTTTAAGGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGAGCCCCATCTTTTAAGGGGGTTATTTGATT  50

seq1  TTCTGGAGTCCACCCTCTTGAGTTCTTTATATATATTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTCCACCCTCTTGAGTTCTTTATATATATTGGATATTAGTCCC  100

seq1  CTAGTTTCCCTTAGAATTTATCTGTTGAGTCATGTAATTATTTGAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTCCCTTAGAATTTATCTGTTGAGTCATGTAATTATTTGAAGAAA  150

seq1  TCATATAATGTTGAAAATCTTGTATTTGAAGGTTGCTGATTTCATCCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAATGTTGAAAATCTTGTATTTGAAGGTTGCTGATTTCATCCTGT  200

seq1  GGTGTGGTAACACATTTAAGAATTAACATAATAAAGTGTTGGTTTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGTAACACATTTAAGAATTAACATAATAAAGTGTTGGTTTTTTTT  250

seq1  AAACCACAACACTGGATTGAGAATGAGGTTCTGTAGTAAAACACTTAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACAACACTGGATTGAGAATGAGGTTCTGTAGTAAAACACTTAAGT  300

seq1  ATCATGAGTGAGCCCCCAGGTTTGATCTCCAGCAGCACTGACAACATAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAGTGAGCCCCCAGGTTTGATCTCCAGCAGCACTGACAACATAAC  350

seq1  AACAGCAACAAATCCTTAGTGTTAGAAAACAAAGGTGCCATTAGCAGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAACAAATCCTTAGTGTTAGAAAACAAAGGTGCCATTAGCAGACC  400

seq1  AAAACATTTTGTAATTTGGAATTTGAAAGTAGGTGGGATAAGTTGGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTTTGTAATTTGGAATTTGAAAGTAGGTGGGATAAGTTGGAAGA  450

seq1  GAAATAGTAGGCCAGATTCAAAACTGCTGTTTAGATGAATAGACTGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGTAGGCCAGATTCAAAACTGCTGTTTAGATGAATAGACTGAAGA  500

seq1  TACATATTGGACACCATGTTGGATAGAATTAATATCAATATACTACATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTGGACACCATGTTGGATAGAATTAATATCAATATACTACATAC  550

seq1  TTGAAAATTGCACATAAAGTAGATTCTAAGTATTCTCACCACAAAATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATTGCACATAAAGTAGATTCTAAGTATTCTCACCACAAAATGGT  600

seq1  ATATGAGGCAATGCTTATGTTAATTAGTTCAATTTAGCTGCTCTACAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGGCAATGCTTATGTTAATTAGTTCAATTTAGCTGCTCTACAATG  650

seq1  AATAACATATACTAAAACAGCATTGTGTTATGTCGTAAATATATATAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACATATACTAAAACAGCATTGTGTTATGTCGTAAATATATATAAGC  700

seq1  AATTGTGGGAAAAAATGAAGGTCTTACTATTTAGCTCTGGCAGGATCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGGGAAAAAATGAAGGTCTTACTATTTAGCTCTGGCAGGATCAGG  750

seq1  AAAACCCAGAACCCAGAGATCTTGCCCACCTCTGTCTCCCAAGGACTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCAGAACCCAGAGATCTTGCCCACCTCTGTCTCCCAAGGACTAGA  800

seq1  ATTAAAGGCATGCCTTCCTATGTCAGTCTCTAATTTTA-TTTTTTGTTTT  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATTAAAGGCATGCCTTCCTATGTCAGTCTCTAATTTTATTTTTTTGTTTT  850

seq1  GTTTGTTATGTCTTG-CTATGTGCTCAAGGATGGCC-TAGCAC-TCATAA  896
      ||||||||||||||| ||||||||||| |||||||| |||||| ||||||
seq2  GTTTGTTATGTCTTGCCTATGTGCTCAGGGATGGCCTTAGCACTTCATAA  900

seq1  T-GTTGACTATG-ATGGCC--TTG-AGTTTTT--ACTTTTACTATCTTAA  939
      | |||||||||| ||||||  ||| |||||||   |||||||||||||||
seq2  TGGTTGACTATGAATGGCCCTTTGAAGTTTTTTACCTTTTACTATCTTAA  950

seq1  CCC---CCTAAAT-GGTGGG-ATTGTGCC--ACTAGTA---TTTTTTTTT  979
      |||   ||||||| |||||| ||||||||   ||||||   || ||||||
seq2  CCCTCTCCTAAATGGGTGGGAATTGTGCCCACCTAGTAATTTTGTTTTTT  1000

seq1  CCTTTTTCCCAGACAGAGTCTTGT-TC-TGTAACCTGTG  1016
      |||||||||||||||||||||||| ||  ||||||||||
seq2  CCTTTTTCCCAGACAGAGTCTTGTCTCAGGTAACCTGTG  1039


| Home | SequenceCutter | Blast | Download |