BAC Information

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BAC

Clone NameB6Ng01-199F23
Chromosome1 (Build37)X (Build37)
Map Location 142,610,638 - 142,611,159121,545,191 - 121,546,286
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG214403, BC026782, LOC545399, EG545367, Cfh, Kcnt2
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199F23.bB6Ng01-199F23.g
ACCGA020722GA020723
length9061,097
definitionB6Ng01-199F23.b B6Ng01-199F23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,610,638 - 142,611,159)(121,545,191 - 121,546,286)
sequence
ggaattctttgttcagttctgagccccattttttaatggggttatttgat
tttctgaagtccaccttcttgagttctttatatatgttggatattagtcc
cctatctgatttaggataggtaaagatcctttcccaatctgttggtggtc
tttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttc
attaggtcccatttgtcgattctcgatcttacagcacaagccattgctgt
tctgttcaggaatttttcccctgtgcccatatcttcaaggcttttcccca
ctttctcctctataagtttcagtgtctctggttttatgtgaagttccttg
atccacttagatttgaccttagtacaaggagataagtatggatcgattcg
cattcttctacacgataacaaccagttgtgccagcaccaattgttgaaaa
tgctgtctttcttccactggatggttttagctcccttgtcgaagatcaag
tgaccataggtgtgtgggttcatttctggatcttcaattctattccattg
gtctacttgtctgtctctataccagtaccatgcagtttttatcacaattg
ctctgtagtaaagctttaggtctggcatggtgattccgccagaagttctt
ttatccttgagaagactttttgctatcctaggttttttgttattccagac
aaatttgcaaattgctccttccaattcgttgaagagttgagttgggaatt
ttgatggggattgcattgaatctgtagattgcttttggcagatagccatt
tttacaatgttgatcctgccaatccatgatcatgggagatctttccatct
tctgagaatcttctttaatttccttccttcagagatttgaagttttttat
tcatac

gaattcacatgaaagaacaaagtaataagaaagatgaatggaaaataaac
aactgagccaagaagacaaaactgaatccaaatttgatggtgaggaaagt
ctagagccaatccagccagtgttgcaaaactttaaagattcagaaattgc
ccacagcaaatacttctgggaaagaaagagcaaaaataaaaataaataaa
agagataggtggaatttttttttcagaaagtagaatctgaattcaaatat
ttcatctcaccaatgaaatgacaattaatacttggagaatttttgaattc
attctaattggagaatacagggataattggtaatttttatttcctttcta
catacaatatagaaatattatatctatattaggcttagagtcaggaaaac
gtgggaaacaatgtagataattaatattcatctctagaagtcagccaggt
aaagaacaaagtcaaaataacacaaatggcaaatctaaaaaaagcaacac
tgtaaattcagcatgtgctcagaaatacaaatatgatttttaagaaattc
caccctttattatgaacaatgaatataattaccagaatttaacctttaag
aaaatcacatggataatacaagttagaaggaaactacacacctcaagcat
aacaaaattcattatatatatttatacatacacacacacataaacatgta
gtctgagccagaaatgcaatctcttactgtttgaatcagttacaaagata
tttttgtcacatagattctctcttaaagaagagaaaaatccattatatca
ttgacatttctctggatgctacaacctgaatccatcttgagatgtttttt
tttttttttttcatccttagagattgagctacagtgcagattcaaaatca
taggaattgtaattcttgagtcactggagtaatcttattgcagaaagttt
ggagttaaaaataatctataacttagaagagtgaatattgtcacaaactt
tgtagaaatttaaatgtggacttatgggaagacatggtggctgttaggtt
ctatttctcagggtagaaatggatctactagatggccagtttattgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_142610638_142611159
seq2: B6Ng01-199F23.b_427_952 (reverse)

seq1  GTATGA--TAAAAACTTCAAATCTCTGAA-GAAAGAAATTAAAGAAGA-T  46
      ||||||   |||||||||||||||||||| ||| |||||||||||||| |
seq2  GTATGAATAAAAAACTTCAAATCTCTGAAGGAAGGAAATTAAAGAAGATT  50

seq1  CTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACAT  96
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTCAGAAGATGGAAAGATCTCCCATGATCATGGATTGGCAGGATCAACAT  100

seq1  TGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCC  146
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGTAAAAATGGCTATC-TGCCAAAAGCAATCTACAGATTCAATGCAATCC  149

seq1  CCATCAAAATT-CCAACTCAATTCTTCAACGAATTGGAAGGAGCAATTTG  195
      ||||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  CCATCAAAATTCCCAACTCAACTCTTCAACGAATTGGAAGGAGCAATTTG  199

seq1  CAAATTTGTCTGGAATAACAAAAAACCTAGGATAGCAAAAAGTCTTCTCA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTGTCTGGAATAACAAAAAACCTAGGATAGCAAAAAGTCTTCTCA  249

seq1  AGGATAAAAGAACTTCTGGCGGAATCACCATGCCAGACCTAAAGCTTTAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAAAAGAACTTCTGGCGGAATCACCATGCCAGACCTAAAGCTTTAC  299

seq1  TACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACA  349

seq1  AGTAGACCAATGGAATAGAATTGAAGATCCAGAAATGAACCCACACACCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGACCAATGGAATAGAATTGAAGATCCAGAAATGAACCCACACACCT  399

seq1  ATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAA  449

seq1  GACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCGTGTAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCGTGTAG  499

seq1  AAGAATGCGAATCGATCCATACTTATC  522
      |||||||||||||||||||||||||||
seq2  AAGAATGCGAATCGATCCATACTTATC  526


seq1: chrX_121545191_121546286
seq2: B6Ng01-199F23.g_63_1159

seq1  GAATTCACATGAAAGAACAAAGTAATAAGAAAGATGAATGGAAAATAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGAAAGAACAAAGTAATAAGAAAGATGAATGGAAAATAAAC  50

seq1  AACTGAGCCAAGAAGACAAAACTGAATCCAAATTTGATGGTGAGGAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGCCAAGAAGACAAAACTGAATCCAAATTTGATGGTGAGGAAAGT  100

seq1  CTAGAGCCAATCCAGCCAGTGTTGCAAAACTTTAAAGATTCAGAAATTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGCCAATCCAGCCAGTGTTGCAAAACTTTAAAGATTCAGAAATTGC  150

seq1  CCACAGCAAATACTTCTGGGAAAGAAAGAGCAAAAATAAAAATAAATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCAAATACTTCTGGGAAAGAAAGAGCAAAAATAAAAATAAATAAA  200

seq1  AGAGATAGGTGGAATTTTTTTTTCAGAAAGTAGAATCTGAATTCAAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAGGTGGAATTTTTTTTTCAGAAAGTAGAATCTGAATTCAAATAT  250

seq1  TTCATCTCACCAATGAAATGACAATTAATACTTGGAGAATTTTTGAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTCACCAATGAAATGACAATTAATACTTGGAGAATTTTTGAATTC  300

seq1  ATTCTAATTGGAGAATACAGGGATAATTGGTAATTTTTATTTCCTTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAATTGGAGAATACAGGGATAATTGGTAATTTTTATTTCCTTTCTA  350

seq1  CATACAATATAGAAATATTATATCTATATTAGGCTTAGAGTCAGGAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAATATAGAAATATTATATCTATATTAGGCTTAGAGTCAGGAAAAC  400

seq1  GTGGGAAACAATGTAGATAATTAATATTCATCTCTAGAAGTCAGCCAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAACAATGTAGATAATTAATATTCATCTCTAGAAGTCAGCCAGGT  450

seq1  AAAGAACAAAGTCAAAATAACACAAATGGCAAATCTAAAAAAAGCAACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACAAAGTCAAAATAACACAAATGGCAAATCTAAAAAAAGCAACAC  500

seq1  TGTAAATTCAGCATGTGCTCAGAAATACAAATATGATTTTTAAGAAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATTCAGCATGTGCTCAGAAATACAAATATGATTTTTAAGAAATTC  550

seq1  CACCCTTTATTATGAACAATGAATATAATTACCAGAATTTAACCTTTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTTATTATGAACAATGAATATAATTACCAGAATTTAACCTTTAAG  600

seq1  AAAATCACATGGATAATACAAGTTAGAAGGAAACTACACACCTCAAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCACATGGATAATACAAGTTAGAAGGAAACTACACACCTCAAGCAT  650

seq1  AACAAAATTCATTATATATATTTATACATACACACACACATAAACATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATTCATTATATATATTTATACATACACACACACATAAACATGTA  700

seq1  GTCTGAGCCAGAAATGCAATCTCTTACTGTTTGAATCAGTTACAAAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGCCAGAAATGCAATCTCTTACTGTTTGAATCAGTTACAAAGATA  750

seq1  TTTTTGTCACATAGATTCTCTCTTAAAGAAGAGAAAAATCCATTATATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCACATAGATTCTCTCTTAAAGAAGAGAAAAATCCATTATATCA  800

seq1  TTGACATTTCTCTGGATGCTACAACCTGAATCCATCTTGAGATGTTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||      
seq2  TTGACATTTCTCTGGATGCTACAACCTGAATCCATCTTGAGATG------  844

seq1  TTTTTTTTTTTTTTTTTTCATCCTTAGAGATTGAGCTACAGTGCAGATTC  900
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTTTTTTTTTTTTTTTCATCCTTAGAGATTGAGCTACAGTGCAGATTC  893

seq1  AAAAATCATAGGAATTGTAATTC-TGAGTCACTGGAGTAATCTTA-TGCA  948
       |||||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  -AAAATCATAGGAATTGTAATTCTTGAGTCACTGGAGTAATCTTATTGCA  942

seq1  GAAAGTTT-GAGT--AAAATAATCTATAACTTAGAAGAGTGAATA-TGTC  994
      |||||||| ||||  |||||||||||||||||||||||||||||| ||||
seq2  GAAAGTTTGGAGTTAAAAATAATCTATAACTTAGAAGAGTGAATATTGTC  992

seq1  ACAAACTTTGTAGAAAATTTAAATGTGGAC-TAT-GGAAGACATGGTGGT  1042
      ||||||||||||| |||||||||||||||| ||| |||||||||||||| 
seq2  ACAAACTTTGTAG-AAATTTAAATGTGGACTTATGGGAAGACATGGTGGC  1041

seq1  TGGTA-GTTCTA-TTCTCAGGGGTAGAAATGATACTACTAGATGG-CAGT  1089
      || || |||||| |||||| |||||||||||   ||||||||||| ||||
seq2  TGTTAGGTTCTATTTCTCA-GGGTAGAAATGGATCTACTAGATGGCCAGT  1090

seq1  TTATTGC  1096
      |||||||
seq2  TTATTGC  1097


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