BAC Information

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BAC

Clone NameB6Ng01-199J09
ChromosomeX (Build37)
Map Location 70,312,395 - 70,484,478
singlet/doubletdoublet
Overlap genePnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c
Upstream geneMagea4, Gabre, Magea10, Gabra3, Gabrq, Magea9, Cetn2, Nsdhl, Zfp185, Pnma5, LOC628237
Downstream geneXlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199J09.bB6Ng01-199J09.g
ACCGA020881GA020882
length1,012621
definitionB6Ng01-199J09.b B6Ng01-199J09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,312,395 - 70,313,402)(70,483,858 - 70,484,478)
sequence
gaattccagagagcaagcagggacagccaggtgaatacaactctgccagg
cagctgccaaggctggccccaaaccctgccgacctggagggtggcctggc
agctttgccgaggtgccatcctccatctgccacccataaccaaacaggtg
gacatcacagaaaaggccatctcaagggttctgccaactgcctggctctc
ccaacacaaatgccccttcctcttccctttcccctctcccccttcccctg
ccactgctgtccagaggcaggctgccccctgctctggaaccccgccccct
tatctgttaacctcatagtgacccagctgtccagtgagtcccttccccca
tcacgtgcttacccaccatcagctgctcctgtataaagctgtgagtgagg
gcaactggaggccctgactacctacctggtcagccacttctacaccctgg
cacgtgttgtgagcttctgtgccagcctaggctatgctagctgctctctt
acccacctggtgttgtgaactccttgtcagctttcctagtgtacatctag
gccagctgcctgctgcttgttctcttgcagatgtgtgtgtgtgcgcgtgt
gttctaacctgatcagatgctccccggagtttcctgagctccgtctggaa
gccagcaggaaccatggattgttgacaagagactggctgatgctcatctt
acgattgattttcagtctgggacaggaagaccttgaactgggcatgggta
gggcctggggactgggctgtgctgatcccctcctgttgtttctttgtgac
tatcattccttgggttggtggggtatcccttgctttgctttgtagtttct
tgttacttatcctgtgccagaatagggcaaggcacccttacagtggtaat
ccccttgtgagagttcctaaagagtgaggaaattttaagaggtagctctt
tggcctttgggaaggaaaaatagcaaaggatttcatgggtggtgggcaga
caggcctatctg
gaattctctgatggtcatgggtatgcatcctcacagaaccaattcttcag
caggagaaaataaaggagaagctgtgcttctcaggaagatgaatacttgt
ggaatgttactcagatactaattaattacacttctccctaagatttataa
acctaaggtatttgaagtgacttccttctaatccaacaggaaacagaaac
tgttagtgtaaaaccacaaaatccacctattttccatttccctgtcagaa
tattttagatgccctttcccagtcttccctctgaagctttagtgagggca
cgtcagtcatgcttggtttggatgggctttcttcatgtcgagaaggaata
tcacagtgttcaccgttgtcttctacaggcaggaactttataaggactat
tctcatcagtttttgactttggttatgatgtggaatatagatgtagacca
aatcaagaaacaggctggaaaactctctgtgagtatcaggcttaccttta
aaggagtccatttcctcagcatcagaggtagcaacacaggcttcctgcag
caggtctggagggaaggggcagcacatgagctctgggagacaaggagggt
ggttgatgtggaggggagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_70312395_70313402
seq2: B6Ng01-199J09.b_43_1054

seq1  GAATTCCAGAGAGCAAGCAGGGACAGCCAGGTGAATACAACTCTGCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGAGCAAGCAGGGACAGCCAGGTGAATACAACTCTGCCAGG  50

seq1  CAGCTGCCAAGGCTGGCCCCAAACCCTGCCGACCTGGAGGGTGGCCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCCAAGGCTGGCCCCAAACCCTGCCGACCTGGAGGGTGGCCTGGC  100

seq1  AGCTTTGCCGAGGTGCCATCCTCCATCTGCCACCCATAACCAAACAGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGCCGAGGTGCCATCCTCCATCTGCCACCCATAACCAAACAGGTG  150

seq1  GACATCACAGAAAAGGCCATCTCAAGGGTTCTGCCAACTGCCTGGCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCACAGAAAAGGCCATCTCAAGGGTTCTGCCAACTGCCTGGCTCTC  200

seq1  CCAACACAAATGCCCCTTCCTCTTCCCTTTCCCCTCTCCCCCTTCCCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACAAATGCCCCTTCCTCTTCCCTTTCCCCTCTCCCCCTTCCCCTG  250

seq1  CCACTGCTGTCCAGAGGCAGGCTGCCCCCTGCTCTGGAACCCCGCCCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCTGTCCAGAGGCAGGCTGCCCCCTGCTCTGGAACCCCGCCCCCT  300

seq1  TATCTGTTAACCTCATAGTGACCCAGCTGTCCAGTGAGTCCCTTCCCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTTAACCTCATAGTGACCCAGCTGTCCAGTGAGTCCCTTCCCCCA  350

seq1  TCACGTGCTTACCCACCATCAGCTGCTCCTGTATAAAGCTGTGAGTGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTGCTTACCCACCATCAGCTGCTCCTGTATAAAGCTGTGAGTGAGG  400

seq1  GCAACTGGAGGCCCTGACTACCTACCTGGTCAGCCACTTCTACACCCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGGAGGCCCTGACTACCTACCTGGTCAGCCACTTCTACACCCTGG  450

seq1  CACGTGTTGTGAGCTTCTGTGCCAGCCTAGGCTATGCTAGCTGCTCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGTTGTGAGCTTCTGTGCCAGCCTAGGCTATGCTAGCTGCTCTCTT  500

seq1  ACCCACCTGGTGTTGTGAACTCCTTGTCAGCTTTCCTAGTGTACATCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCTGGTGTTGTGAACTCCTTGTCAGCTTTCCTAGTGTACATCTAG  550

seq1  GCCAGCTGCCTGCTGCTTGTTCTCTTGCAGATGTGTGTGTGTGCGCGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTGCCTGCTGCTTGTTCTCTTGCAGATGTGTGTGTGTGCGCGTGT  600

seq1  GTTCTAACCTGATCAGATGCTCCCCGGAG-TTCCTGAGCTCCGTCTGGAA  649
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTTCTAACCTGATCAGATGCTCCCCGGAGTTTCCTGAGCTCCGTCTGGAA  650

seq1  GCCAGCAGGAACCATGGA-TGTTGACAAGAGACTGGCTGATGCTCATCTT  698
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCCAGCAGGAACCATGGATTGTTGACAAGAGACTGGCTGATGCTCATCTT  700

seq1  ACGATTGA-TTTCAGTCTGGGACAGGAAGACC-TGAACTGGGCATGGGTA  746
      |||||||| ||||||||||||||||||||||| |||||||||||||||||
seq2  ACGATTGATTTTCAGTCTGGGACAGGAAGACCTTGAACTGGGCATGGGTA  750

seq1  GGGCCTGGGGACTGGGCTGTGCTGATCCCCTCCTGTTG-TTCCTTGTGAC  795
      |||||||||||||||||||||||||||||||||||||| ||| |||||||
seq2  GGGCCTGGGGACTGGGCTGTGCTGATCCCCTCCTGTTGTTTCTTTGTGAC  800

seq1  TATCATTCCTTGGGTTGGTGGGGTATTCCTTGCTTTGCTTTGTAGTTTCT  845
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TATCATTCCTTGGGTTGGTGGGGTATCCCTTGCTTTGCTTTGTAGTTTCT  850

seq1  TGTTAC-TATCCTGTGCCAGAATAGGGCAAGGCCACCCTACAGTGGTAAT  894
      |||||| ||||||||||||||||||||||||||  || ||||||||||||
seq2  TGTTACTTATCCTGTGCCAGAATAGGGCAAGGCACCCTTACAGTGGTAAT  900

seq1  -CCCTTGTGAGAGTTCCTAAAAGAGTGAGGAAATTTTAAGAGGTAGCTCT  943
       ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCCCTTGTGAGAGTTCCT-AAAGAGTGAGGAAATTTTAAGAGGTAGCTCT  949

seq1  TGGGCCTTTGGGAAGGGAAAAATAGCAGAGGGATTCCAT-GGTGGTGGGC  992
      | |||||||||||| |||||||||||| | ||||| ||| ||||||||||
seq2  TTGGCCTTTGGGAA-GGAAAAATAGCA-AAGGATTTCATGGGTGGTGGGC  997

seq1  AGACAAGGCCCATCTG  1008
      |||| ||||| |||||
seq2  AGAC-AGGCCTATCTG  1012

seq1: chrX_70483858_70484478
seq2: B6Ng01-199J09.g_63_683 (reverse)

seq1  TTTCTCCCCTCCACATCAACCACCCTCCTTGTCTCCCAGAGCTCATGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCCCTCCACATCAACCACCCTCCTTGTCTCCCAGAGCTCATGTGC  50

seq1  TGCCCCTTCCCTCCAGACCTGCTGCAGGAAGCCTGTGTTGCTACCTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTTCCCTCCAGACCTGCTGCAGGAAGCCTGTGTTGCTACCTCTGA  100

seq1  TGCTGAGGAAATGGACTCCTTTAAAGGTAAGCCTGATACTCACAGAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGGAAATGGACTCCTTTAAAGGTAAGCCTGATACTCACAGAGAGT  150

seq1  TTTCCAGCCTGTTTCTTGATTTGGTCTACATCTATATTCCACATCATAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGCCTGTTTCTTGATTTGGTCTACATCTATATTCCACATCATAAC  200

seq1  CAAAGTCAAAAACTGATGAGAATAGTCCTTATAAAGTTCCTGCCTGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCAAAAACTGATGAGAATAGTCCTTATAAAGTTCCTGCCTGTAGA  250

seq1  AGACAACGGTGAACACTGTGATATTCCTTCTCGACATGAAGAAAGCCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACGGTGAACACTGTGATATTCCTTCTCGACATGAAGAAAGCCCAT  300

seq1  CCAAACCAAGCATGACTGACGTGCCCTCACTAAAGCTTCAGAGGGAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCAAGCATGACTGACGTGCCCTCACTAAAGCTTCAGAGGGAAGAC  350

seq1  TGGGAAAGGGCATCTAAAATATTCTGACAGGGAAATGGAAAATAGGTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGGGCATCTAAAATATTCTGACAGGGAAATGGAAAATAGGTGGA  400

seq1  TTTTGTGGTTTTACACTAACAGTTTCTGTTTCCTGTTGGATTAGAAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGGTTTTACACTAACAGTTTCTGTTTCCTGTTGGATTAGAAGGAA  450

seq1  GTCACTTCAAATACCTTAGGTTTATAAATCTTAGGGAGAAGTGTAATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTCAAATACCTTAGGTTTATAAATCTTAGGGAGAAGTGTAATTAA  500

seq1  TTAGTATCTGAGTAACATTCCACAAGTATTCATCTTCCTGAGAAGCACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATCTGAGTAACATTCCACAAGTATTCATCTTCCTGAGAAGCACAG  550

seq1  CTTCTCCTTTATTTTCTCCTGCTGAAGAATTGGTTCTGTGAGGATGCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCTTTATTTTCTCCTGCTGAAGAATTGGTTCTGTGAGGATGCATA  600

seq1  CCCATGACCATCAGAGAATTC  621
      |||||||||||||||||||||
seq2  CCCATGACCATCAGAGAATTC  621