BAC Information

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BAC

Clone NameB6Ng01-200I14
ChromosomeX (Build37)X (Build37)
Map Location 18,447,986 - 18,448,19569,951,865 - 69,953,013
singlet/doubletsingletsinglet
Overlap geneEG628855
Upstream geneEG436196, EG331391, Dusp21, LOC100043951, Utx, LOC100043952, 4930578C19Rik, LOC100043098
Downstream geneLOC385333, EG628871, LOC100043953, BC049702, LOC675558, LOC668995
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200I14.bB6Ng01-200I14.g
ACCGA021566GA021567
length7231,133
definitionB6Ng01-200I14.b B6Ng01-200I14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,447,986 - 18,448,195)(69,951,865 - 69,953,013)
sequence
gaattctctttctgctgaacactataggataacacacttatttttagcac
tttaactagttttgagtctctgctcttatgttctttctgtcccccttttt
atgtgtgggtgcataaactacaatctctctctctctcacacacacacact
cacacacactttatacatgtaaataaataagttaaacaaaacaactaagt
taacatataatttgtttgccacacaaatcactatttaagtgtataagcta
atgcattttagtatatgtggagctatataaccaccacctctacctagatt
taaaaacattttcattacatgagaacacgtatacattaaacaaccattct
tcatgaatttccatggattcatttttcacaaccaatcacaggtggcaaag
tatccaagtgctcaaatgatgaatggacaaataagatgccatatatagta
caataatatagtattccttattttgtacacacacaaaacatctattttta
attctctggcagtgaagctggaaacaacccagatgtctcacaatggaaga
atggatacagaaaatgtggttcatttacacaatggcatactactcagcta
ttaagaacgaggacatcctgagtcttgcaggcaaatggatggaactagaa
aatatcctgagtgagataactgagacccaaaaggacatgcatggtatgta
ctcactaataagtggatattagc

gaattcaatgtaaggcattatttactggtttaaaaaccatattaatgtct
ataattacctgtctttcttagctttagaatgattgaaatttttctatgtc
cttttctcccagcacagagaacccaatatttattctttaaatgagacaag
cccaaataccagatatgaaaagccttcttttgagtttgtttttttttaaa
cattttctgtcttttattggatgtgtatttcctggacaaaatctattttt
gtctgacattggtttgtttgtttgttctttaatccagccaacaccactaa
actgtattctacatagcatatagcaacacatcattggtttgaaattctaa
tcaattcttttaacctttttttcttttattaatcactgcctgcatataac
atgaagaaaggcaaatatagtagattcaaatagaaatgaaattcacagtc
ccttggattaaaataaatagcagttacctttgccatttgataaatacaaa
tctgtaacaggggactcatgacataaaacaaaaagaataatatgacattt
gattatataagccacaagatcagaactctgagtgtaaaatcaattacaga
tattacagactagcttctctttaatcaattgctatatttgtacttaattt
tctttcttccagggttgctaaccaccaaagggcaagaaagcttttctaaa
gttgatgtacacacaaatcacctgggagatcttgggttttttgttttttg
ttttaaataaaagccaaatccactatagtaagtctagaatggagacttta
ttattattattattagttattttatttatttacatttttattagatgttt
tcttcatttacatttcaaatgctactcccttcctagtttcctctccgaaa
atcccctacccctcctcccttcccctgctcaccaacccacccactctgct
tcctgacccaggcattcctctatactggggcatagagccttcacaggacc
aatggcctctctcccattgaatgactgactaggcatctctgctacaaaat
atagtagagccacacgtccccatggatttctttatggtgggatagtccaa
ggaatctggggttactgattagttcaatgatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_18447986_18448195
seq2: B6Ng01-200I14.b_559_768 (reverse)

seq1  GCTAATATCCACTTATTAGTGAGTACATACCATGCATGTCCTTTGGGGTC  50
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCTAATATCCACTTATTAGTGAGTACATACCATGCATGTCCTTTTGGGTC  50

seq1  TGA-------CACTCAGTATGACATTTTCTAGTTCCATCTATTTGCCTGC  93
      | |       |||||||   || |||||||||||||||| ||||||||||
seq2  TCAGTTATCTCACTCAG---GATATTTTCTAGTTCCATCCATTTGCCTGC  97

seq1  AAAAGTCAGGATTTCCTCATTCTTAATTGCTGATTAGTATTCCATTGTGT  143
      || | ||||||| ||||| |||||||| ||||| |||||| |||||||||
seq2  AAGACTCAGGATGTCCTCGTTCTTAATAGCTGAGTAGTATGCCATTGTGT  147

seq1  AAATAAACCACATTTTTTTTCTATACCCATTCTTCTGTTGTGGGACATCT  193
      |||| |||||||    |||||| || |||||||||  ||||| |||||||
seq2  AAATGAACCACA----TTTTCTGTATCCATTCTTCCATTGTGAGACATCT  193

seq1  GGGTTGTTTCCAGCTTC  210
      |||||||||||||||||
seq2  GGGTTGTTTCCAGCTTC  210


seq1: chrX_69951865_69953013
seq2: B6Ng01-200I14.g_70_1202

seq1  GAATTCAATGTAAGGCATTATTTACTGGTTTAAAAACCATATTAATGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTAAGGCATTATTTACTGGTTTAAAAACCATATTAATGTCT  50

seq1  ATAATTACCTGTCTTTCTTAGCTTTAGAATGATTGAAATTTTTCTATGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTACCTGTCTTTCTTAGCTTTAGAATGATTGAAATTTTTCTATGTC  100

seq1  CTTTTCTCCCAGCACAGAGAACCCAATATTTATTCTTTAAATGAGACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCCCAGCACAGAGAACCCAATATTTATTCTTTAAATGAGACAAG  150

seq1  CCCAAATACCAGATATGAAAAGCCTTCTTTTGAGTTTGTTTTTTTTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATACCAGATATGAAAAGCCTTCTTTTGAGTTTGTTTTTTTTTAAA  200

seq1  CATTTTCTGTCTTTTATTGGATGTGTATTTCCTGGACAAAATCTATTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTGTCTTTTATTGGATGTGTATTTCCTGGACAAAATCTATTTTT  250

seq1  GTCTGACATTGGTTTGTTTGTTTGTTCTTTAATCCAGCCAACACCACTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACATTGGTTTGTTTGTTTGTTCTTTAATCCAGCCAACACCACTAA  300

seq1  ACTGTATTCTACATAGCATATAGCAACACATCATTGGTTTGAAATTCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATTCTACATAGCATATAGCAACACATCATTGGTTTGAAATTCTAA  350

seq1  TCAATTCTTTTAACCTTTTTTTCTTTTATTAATCACTGCCTGCATATAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCTTTTAACCTTTTTTTCTTTTATTAATCACTGCCTGCATATAAC  400

seq1  ATGAAGAAAGGCAAATATAGTAGATTCAAATAGAAATGAAATTCACAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAAAGGCAAATATAGTAGATTCAAATAGAAATGAAATTCACAGTC  450

seq1  CCTTGGATTAAAATAAATAGCAGTTACCTTTGCCATTTGATAAATACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGATTAAAATAAATAGCAGTTACCTTTGCCATTTGATAAATACAAA  500

seq1  TCTGTAACAGGGGACTCATGACATAAAACAAAAAGAATAATATGACATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAACAGGGGACTCATGACATAAAACAAAAAGAATAATATGACATTT  550

seq1  GATTATATAAGCCACAAGATCAGAACTCTGAGTGTAAAATCAATTACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATATAAGCCACAAGATCAGAACTCTGAGTGTAAAATCAATTACAGA  600

seq1  TATTACAGACTAGCTTCTCTTTAATCAATTGCTATATTTGTACTTAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAGACTAGCTTCTCTTTAATCAATTGCTATATTTGTACTTAATTT  650

seq1  TCTTTCTTCCAGGGTTGCTAACCACCAAAGGGCAAGAAAGCTTTTCTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTCCAGGGTTGCTAACCACCAAAGGGCAAGAAAGCTTTTCTAAA  700

seq1  GTTGATGTACACACAAATCACCTGGGAGATCTTGGGTTTTTTGTTTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGTACACACAAATCACCTGGGAGATCTTGGGTTTTTTGTTTTTTG  750

seq1  TTTTAAATAAAAGCCAAATCCACTATAGTAAGTCTAGAATGGAGACTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATAAAAGCCAAATCCACTATAGTAAGTCTAGAATGGAGACTTTA  800

seq1  TTATTATTATTATTAGTTATTTTATTTATTTACATTTTTATTAGATGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTATTATTAGTTATTTTATTTATTTACATTTTTATTAGATGTTT  850

seq1  TCTTCATTTACATTTCAAATGCTACTCCCTTTCCTAGTTTCCTCTCCGAA  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCTTCATTTACATTTCAAATGCTACTCCC-TTCCTAGTTTCCTCTCCGAA  899

seq1  AATCCCCTACCCCCTCCTCCCTTCCCCTGCTCACCAACCCACCCACTCCT  950
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  AATCCCCTA-CCCCTCCTCCCTTCCCCTGCTCACCAACCCACCCACT-CT  947

seq1  GCTTCCTGACCCAGGCATTCCTCTATACTGGGGCATAGAGCCTTCACAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTGACCCAGGCATTCCTCTATACTGGGGCATAGAGCCTTCACAGG  997

seq1  ACCAATGGCCTCTCCTCCCATTG-ATGACTGACTAGGCCATTCTCTGCTA  1049
      ||||||||||||| ||||||||| ||||||||||||||   |||||||||
seq2  ACCAATGGCCTCT-CTCCCATTGAATGACTGACTAGGC--ATCTCTGCTA  1044

seq1  C-AAATATAGTTAGAGCCCACACGTTCCCCCATGGGTTTTCTTTAATTGG  1098
      | |||||||| ||||| ||||||||  |||||| || ||||||||  |||
seq2  CAAAATATAG-TAGAG-CCACACGT--CCCCAT-GGATTTCTTTA--TGG  1087

seq1  TGGTATAGTTCCAAGGAGATCTGGGGGGTACTGATTAGTTCATATTGATG  1148
      ||| |||| |||||||| |||| |||| |||||||||||||  | |||||
seq2  TGGGATAG-TCCAAGGA-ATCT-GGGGTTACTGATTAGTTC--AATGATG  1132

seq1  T  1149
      |
seq2  T  1133


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