BAC Information

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BAC

Clone NameB6Ng01-202M01
ChromosomeX (Build37)3 (Build37)
Map Location 141,807,660 - 141,807,7003,995,321 - 3,996,076
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTrpc5, LOC100039436, Zcchc16, LOC666655, LOC623591, Lhfpl1
Downstream geneAmot, EG434860, LOC100039313, LOC623697, LOC623731, LOC237096, LOC100039558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202M01.bB6Ng01-202M01.g
ACCGA023164GA023165
length368987
definitionB6Ng01-202M01.b B6Ng01-202M01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(141,807,660 - 141,807,700)(3,995,321 - 3,996,076)
sequence
tcacagtcatccattggatggaacacaaggtccccattgaaggcattaga
gaaagtatccaggaagatgaaggggtctgaacatgatgaggaacaccagc
atgaactaaccggttcccccagagttccttggaactataccaccaatcaa
agaaaacacatggtagaacttgtggctctagcaatatatgtagcagagga
tggcctagttggtcatcaatggtatgaaagtactttgaccctgtgaagga
tctatgccccactgccaagaccaggaatgggagtgggtgagttggggagc
aggggtctggagagaggattgtctgttcatagttttttttattttttttt
ttgattttttttttttgt

gaattctcttatgtgactaaaaggtcaaacttaagaaaatctgggataaa
ataatctgaggtaaatgctaaagacagagaatatctattaatgaaattga
tcagaaaaatgttggatatctaaatacaatagggatttatgacacaggca
tgaaatattttttaaaaaggcattaaaatgtttatgtagactggagctct
gatatacccaagatgcagttgaggccacaatatctctctcaacacccaac
ataattgggaacccagttttcccaccacaccacaccctggataccccaac
acacctgaaaagcaagactctgaagtaaaaccccatctcgtgaatatgat
aaaggaatttaagaagggtataaataactcccttaaagaaatacacaggt
agcctggtagaagccccttaaaaatgaaacacataagtatcctaaaaaat
acagaaaaatacaatcataccagtaaagaaattgaaaaaattatccagga
tctaaaaatagaaatagaaacattaaagaaaacacaaagggagacaaccc
tggagatggaaatcctaggaaagagatcaggagtcacaaatgcaagcacc
accaacaaaatacaagaaagaaaagagagaatctaaggcatagaagatat
cctagaagacattgacacgtcagtcaaagatgcaaaaagcaaaaagctcc
taacttaaaacatttaagaaatccaggacacaatgaaaatgctaaatcta
agaatagtaggtatagaagaaagtgaagattcacaactcaaatgaccagc
aaacatcttcaacaaaattatagaagaatacttctttaacctaaagagat
acccataaacatacaagaaacctacagaacacaaaatagattgtaccaga
aaagaaattccttctaccatataataatttaaaacaccaagtacacagaa
caaaggaagaatattgaaagcagtaaggaacatgatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_141807660_141807700
seq2: B6Ng01-202M01.b_379_416 (reverse)

seq1  ACAAAAAAAAAAAATCAAAAATCAAAAAACAAAAAACAACT  41
      |||||||||||||||||||||  |||||| |||||| ||||
seq2  ACAAAAAAAAAAAATCAAAAA--AAAAAATAAAAAA-AACT  38


seq1: chr3_3995321_3996076
seq2: B6Ng01-202M01.g_63_818

seq1  GAATTCTCTTATGTGACTAAAAGGTCAAACTTAAGAAAATCTGGGATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTATGTGACTAAAAGGTCAAACTTAAGAAAATCTGGGATAAA  50

seq1  ATAATCTGAGGTAAATGCTAAAGACAGAGAATATCTATTAATGAAATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTGAGGTAAATGCTAAAGACAGAGAATATCTATTAATGAAATTGA  100

seq1  TCAGAAAAATGTTGGATATCTAAATACAATAGGGATTTATGACACAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAAATGTTGGATATCTAAATACAATAGGGATTTATGACACAGGCA  150

seq1  TGAAATATTTTTTAAAAAGGCATTAAAATGTTTATGTAGACTGGAGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATTTTTTAAAAAGGCATTAAAATGTTTATGTAGACTGGAGCTCT  200

seq1  GATATACCCAAGATGCAGTTGAGGCCACAATATCTCTCTCAACACCCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATACCCAAGATGCAGTTGAGGCCACAATATCTCTCTCAACACCCAAC  250

seq1  ATAATTGGGAACCCAGTTTTCCCACCACACCACACCCTGGATACCCCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGGGAACCCAGTTTTCCCACCACACCACACCCTGGATACCCCAAC  300

seq1  ACACCTGAAAAGCAAGACTCTGAAGTAAAACCCCATCTCGTGAATATGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGAAAAGCAAGACTCTGAAGTAAAACCCCATCTCGTGAATATGAT  350

seq1  AAAGGAATTTAAGAAGGGTATAAATAACTCCCTTAAAGAAATACACAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAATTTAAGAAGGGTATAAATAACTCCCTTAAAGAAATACACAGGT  400

seq1  AGCCTGGTAGAAGCCCCTTAAAAATGAAACACATAAGTATCCTAAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGTAGAAGCCCCTTAAAAATGAAACACATAAGTATCCTAAAAAAT  450

seq1  ACAGAAAAATACAATCATACCAGTAAAGAAATTGAAAAAATTATCCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAATACAATCATACCAGTAAAGAAATTGAAAAAATTATCCAGGA  500

seq1  TCTAAAAATAGAAATAGAAACATTAAAGAAAACACAAAGGGAGACAACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAATAGAAATAGAAACATTAAAGAAAACACAAAGGGAGACAACCC  550

seq1  TGGAGATGGAAATCCTAGGAAAGAGATCAGGAGTCACAAATGCAAGCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATGGAAATCCTAGGAAAGAGATCAGGAGTCACAAATGCAAGCACC  600

seq1  ACCAACAAAATACAAGAAAGAAAAGAGAGAATCTAAGGCATAGAAGATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAAAATACAAGAAAGAAAAGAGAGAATCTAAGGCATAGAAGATAT  650

seq1  CCTAGAAGACATTGACACGTCAGTCAAAGATGCAAAAAGCAAAAAGCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAGACATTGACACGTCAGTCAAAGATGCAAAAAGCAAAAAGCTCC  700

seq1  TAACTTAAAACATTTAAGAAATCCAGGACACAATGAAAATGCTAAATCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTAAAACATTTAAGAAATCCAGGACACAATGAAAATGCTAAATCTA  750

seq1  AGAATA  756
      ||||||
seq2  AGAATA  756


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