BAC Information

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BAC

Clone NameB6Ng01-205E09
ChromosomeX (Build37)
Map Location 16,632,180 - 16,800,015
singlet/doubletdoublet
Overlap geneLOC100043063, Efhc2
Upstream geneLOC100043949, LOC100043950, Cypt6, LOC100038939, LOC668993, Maoa, Maob, Ndph
Downstream geneFundc1, EG278181, EG668994, EG436196, EG331391, Dusp21, LOC100043951, Utx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205E09.bB6Ng01-205E09.g
ACCGA025000GA025001
length1,0491,120
definitionB6Ng01-205E09.b B6Ng01-205E09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,632,180 - 16,632,861)(16,798,892 - 16,800,015)
sequence
gaattctttgtttagctctgtaccccatttttaatgggttatttgatttt
ctggagtccaccttcttgagttcttcatatatatatattgggtattagtc
ccctacctgatttaggattggtataactaagaaagtcacacagcaatttt
aaacatacaaaaaaaaagggaacaagttatactaaatcagcttccaaact
ctgacacctttgcatacactagcaagatttttctgaaaggacccagatgt
agctgtctctgtgagactatgccagggtctagcaaatacagaagtggatg
ctcacagtcagctattggatggatcacagggctcccaatggaggagctag
agaaagtacccaaggagctaaagggatctgcaatcctacaggtggaacaa
caatatgaactaaccaatacccccccaaaaaagcctagaccagatgggtt
tagtgcagagttctatcagaccttcaaagaagatctaatcccagttcttc
acaaactattccacaaaatagaaacagaatgccctctacccaactcattc
tataaagccacttttactctgatacctaaaacacaaaaagacccaacaaa
gcgagagaacttcagaccaatatcccttatgaatattgatgcaaaaatcc
tcaataaagttcttgctaaccgaatccaagaacacatcaaaacaatcatc
cattctgaccaagtaggtttcatcccaaggatgcagggatggttcaatat
acggaaatccatcaatgtaatccagtatataaacaaacttaaagacaaaa
accacatgattatctcattagatgggtcgaaggcatttgacaaaatccag
tacccattcattataaaagtcttggaaagatcaggaattcaaggcccata
ccctaaacatgataaagcaatctacagcaaaccagtagccagcatcaaag
taaatggtgagaagcttgaagcaatcccactaaaatcaggactagacaag
gctgcccactttctccctacctattcaacattgtacttgaagtcccagc
gaattcaattacctcatgtcagaggcttccgttcccccctataagtgtct
ttcttgctatagtactcagtattttggtaggacacttgaactagaaatgt
taaatctcttcacttaatttttgcttacaatggatgatactcactcaagt
tctctacggtaatctcttgtgtaccagttagctttgcattttctggtgag
gcccagctaggtctcctgtttgtcttttcttttttctatttccccctgtg
tttttttttcttcaaaattttaaatagatattttctttatttacatttca
aatgctatctcgaaagtctcctataccctcccccgcaccccagccctcct
cccctacacacccactcccacttcttggccctggcgttcccctgtactgg
ggtatataaagtttgcaataccaaggggcctctcttcccaaagatggccg
acttaattccattctaggcaagtaaatgtagtttagtaagaactagtgat
ttattaaatgtgtactttgtacttaggtcagtacagtaggctaggtttat
agactagaaaaggggatctgggacctatagcacactgcacaatattatga
gagtctagaagcaagtagaggatgtgctttaaaatctaatatccaagcct
ttcaattgttaaactctcattctcagtcttttgaagttcggccagtcagc
tctacctacttcctaaggtttgtttctacccatggtccacgtatctgctg
ctgtggaaatggataggatttgctaacctaccagggtgagatttggaatt
tactgtggtggtacctagttctctatataatccttctttcagtatttgca
gcaaattattactggccttcctctatacctacctctgaggggtgcctaat
gttcttacatgaaatggtttgtatttgcaaaaaacctattacacatcata
tgtattcacacacccattcatttaaatttgagaacagggtctatcatatt
gcttagtctggtcttgacctacaatttcttcaccttagccttctatgtag
ttaagatacagcaaggtatggtgcttgctactttaaatcagtttatatac
ttctgatacttatttcaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_16632180_16632861
seq2: B6Ng01-205E09.b_46_727

seq1  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATGGGTTATTTGATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATGGGTTATTTGATTTT  50

seq1  CTGGAGTCCACCTTCTTGAGTTCTTCATATATATATATTGGGTATTAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTCCACCTTCTTGAGTTCTTCATATATATATATTGGGTATTAGTC  100

seq1  CCCTACCTGATTTAGGATTGGTATAACTAAGAAAGTCACACAGCAATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACCTGATTTAGGATTGGTATAACTAAGAAAGTCACACAGCAATTTT  150

seq1  AAACATACAAAAAAAAAGGGAACAAGTTATACTAAATCAGCTTCCAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATACAAAAAAAAAGGGAACAAGTTATACTAAATCAGCTTCCAAACT  200

seq1  CTGACACCTTTGCATACACTAGCAAGATTTTTCTGAAAGGACCCAGATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACCTTTGCATACACTAGCAAGATTTTTCTGAAAGGACCCAGATGT  250

seq1  AGCTGTCTCTGTGAGACTATGCCAGGGTCTAGCAAATACAGAAGTGGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCTCTGTGAGACTATGCCAGGGTCTAGCAAATACAGAAGTGGATG  300

seq1  CTCACAGTCAGCTATTGGATGGATCACAGGGCTCCCAATGGAGGAGCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGTCAGCTATTGGATGGATCACAGGGCTCCCAATGGAGGAGCTAG  350

seq1  AGAAAGTACCCAAGGAGCTAAAGGGATCTGCAATCCTACAGGTGGAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTACCCAAGGAGCTAAAGGGATCTGCAATCCTACAGGTGGAACAA  400

seq1  CAATATGAACTAACCAATACCCCCCCAAAAAAGCCTAGACCAGATGGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGAACTAACCAATACCCCCCCAAAAAAGCCTAGACCAGATGGGTT  450

seq1  TAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATCCCAGTTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATCCCAGTTCTTC  500

seq1  ACAAACTATTCCACAAAATAGAAACAGAATGCCCTCTACCCAACTCATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTATTCCACAAAATAGAAACAGAATGCCCTCTACCCAACTCATTC  550

seq1  TATAAAGCCACTTTTACTCTGATACCTAAAACACAAAAAGACCCAACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGCCACTTTTACTCTGATACCTAAAACACAAAAAGACCCAACAAA  600

seq1  GCGAGAGAACTTCAGACCAATATCCCTTATGAATATTGATGCAAAAATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGAGAACTTCAGACCAATATCCCTTATGAATATTGATGCAAAAATCC  650

seq1  TCAATAAAGTTCTTGCTAACCGAATCCAAGAA  682
      ||||||||||||||||||||||||||||||||
seq2  TCAATAAAGTTCTTGCTAACCGAATCCAAGAA  682

seq1: chrX_16798892_16800015
seq2: B6Ng01-205E09.g_66_1185 (reverse)

seq1  AATTGAATTAGGTATCAGAAGTAATATAAAAACTGATTTAAAGTAGCAAG  50
      ||||||| || ||||||||||   |||| |||||||||||||||||||| 
seq2  AATTGAAATAAGTATCAGAAG---TATATAAACTGATTTAAAGTAGCAA-  46

seq1  GCACCATAACTTGCTTGTTACCTAACCTACATAGAAGGCTAAGGTGAAAG  100
      |||||||| ||||||   || || | ||||||||||||||||||||||  
seq2  GCACCATACCTTGCT--GTATCTTAACTACATAGAAGGCTAAGGTGAAGA  94

seq1  AATTGTAAGTTCAAGACCAGACTAAGCAATATGATTAGACCCTG-TCTC-  148
      |||||| || |||||||||||||||||||||||| ||||||||| |||| 
seq2  AATTGT-AGGTCAAGACCAGACTAAGCAATATGA-TAGACCCTGTTCTCA  142

seq1  AATTTAAATGAATGGGTGTGTGAATACATAATGATGTGT-ATAGGTTTTT  197
      ||||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  AATTTAAATGAATGGGTGTGTGAATACAT-ATGATGTGTAATAGGTTTTT  191

seq1  TGCAAATACAAACCATTTCATGTAAGAACATTAGGCACCCCTCAGAGGTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATACAAACCATTTCATGTAAGAACATTAGGCACCCCTCAGAGGTA  241

seq1  GGTATAGAGGAAGGGCCAGTAATAATTTGCTGCAAATACTG-AAGAAGGA  296
      |||||||||||| |||||||||||||||||||||||||||| ||||||||
seq2  GGTATAGAGGAA-GGCCAGTAATAATTTGCTGCAAATACTGAAAGAAGGA  290

seq1  TTATATAGAGAACTAGGTACCACCACAGT-AATTCCAAATCTCACCCTGG  345
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTATATAGAGAACTAGGTACCACCACAGTAAATTCCAAATCTCACCCTGG  340

seq1  TAGGTTAGCAAATCCTATCCATTTCCACAGCAGCAGATACGTGGACCATG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTAGCAAATCCTATCCATTTCCACAGCAGCAGATACGTGGACCATG  390

seq1  GGTAGAAACAAACCTTAGGAAGTAGGTAGAGCTGACTGGCCGAACTTCAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAACAAACCTTAGGAAGTAGGTAGAGCTGACTGGCCGAACTTCAA  440

seq1  AAGACTGAGAATGAGAGTTTAACAATTG-AAGGCTTGGATATTAGATTTT  494
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAGACTGAGAATGAGAGTTTAACAATTGAAAGGCTTGGATATTAGATTTT  490

seq1  AAAGCACATCCTCTACTTGCTTCTAGACTCTCATAATATTGTGCAGTGTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACATCCTCTACTTGCTTCTAGACTCTCATAATATTGTGCAGTGTG  540

seq1  CTATAGGTCCCAGATCCCCTTTTCTAGTCTATAAACCTAGCCTACTGTAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGGTCCCAGATCCCCTTTTCTAGTCTATAAACCTAGCCTACTGTAC  590

seq1  TGACCTAAGTACAAAGTACACATTTAATAAATCACTAGTTCTTACTAAAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTAAGTACAAAGTACACATTTAATAAATCACTAGTTCTTACTAAAC  640

seq1  TACATTTACTTGCCTAGAATGGAATTAAGTCGGCCATCTTTGGGAAGAGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTACTTGCCTAGAATGGAATTAAGTCGGCCATCTTTGGGAAGAGA  690

seq1  GGCCCCTTGGTATTGCAAACTTTATATACCCCAGTACAGGGGAACGCCAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCTTGGTATTGCAAACTTTATATACCCCAGTACAGGGGAACGCCAG  740

seq1  GGCCAAGAAGTGGGAGTGGGTGTGTAGGGGAGGAGGGCTGGGGTGCGGGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGAAGTGGGAGTGGGTGTGTAGGGGAGGAGGGCTGGGGTGCGGGG  790

seq1  GAGGGTATAGGAGACTTTCGAGATAGCATTTGAAATGTAAATAAAGAAAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTATAGGAGACTTTCGAGATAGCATTTGAAATGTAAATAAAGAAAA  840

seq1  TATCTATTTAAAATTTTGAAGAAAAAAAAACACAGGGGGAAATAGAAAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATTTAAAATTTTGAAGAAAAAAAAACACAGGGGGAAATAGAAAAA  890

seq1  AGAAAAGACAAACAGGAGACCTAGCTGGGCCTCACCAGAAAATGCAAAGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGACAAACAGGAGACCTAGCTGGGCCTCACCAGAAAATGCAAAGC  940

seq1  TAACTGGTACACAAGAGATTACCGTAGAGAACTTGAGTGAGTATCATCCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGTACACAAGAGATTACCGTAGAGAACTTGAGTGAGTATCATCCA  990

seq1  TTGTAAGCAAAAATTAAGTGAAGAGATTTAACATTTCTAGTTCAAGTGTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGCAAAAATTAAGTGAAGAGATTTAACATTTCTAGTTCAAGTGTC  1040

seq1  CTACCAAAATACTGAGTACTATAGCAAGAAAGACACTTATAGGGGGGAAC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAAAATACTGAGTACTATAGCAAGAAAGACACTTATAGGGGGGAAC  1090

seq1  GGAAGCCTCTGACATGAGGTAATTGAATTC  1124
      ||||||||||||||||||||||||||||||
seq2  GGAAGCCTCTGACATGAGGTAATTGAATTC  1120